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Title: Submonomer synthesis of sequence defined peptoids with diverse side-chains.

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Peptoids are a diverse family of sequence-defined oligomers of N-substituted glycine monomers, that can be readily accessed by the solid-phase submonomer synthesis method. Due to the versatility and efficiency of this chemistry, and the easy access to hundreds of potential monomers, there is an enormous potential sequence space that can be explored. This has enabled researchers from many different fields to custom-design peptoid sequences tailored to a wide variety of problems in biomedicine, nanoscience and polymer science. Here we provide detailed protocols for the synthesis of peptoids, using optimized protocols that can be performed by non-chemists. The submonomer method is fully compatible with Fmoc-peptide synthesis conditions, so the method is readily automated on existing automated peptide synthesizers using protocols provided here. Although the submonomer synthesis for peptoids is well established, there are special considerations required in order to access many of the most useful and desirable sidechains. Here we provide methods to include most of the amino-acid-like side chains, some of the most important non-natural monomer classes, as well as the creation of peptoid conjugates and peptide-peptoid hybrids.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
DOE Contract Number:
AC02-05CH11231
OSTI ID:
1845665
Resource Relation:
Related Information: Book Title: Methods in Enzymology
Country of Publication:
United States
Language:
English

References (77)

Isolation of Protein Ligands from Large Peptoid Libraries journal October 2003
The Role of Hydrogen Bonding in Peptoid-Based Marine Antifouling Coatings journal January 2019
A practical method for the synthesis of peptoids containing both lysine-type and arginine-type monomers journal January 2016
Incorporation of Unprotected Heterocyclic Side Chains into Peptoid Oligomers via Solid-Phase Submonomer Synthesis journal July 2003
Peptoid ligands that bind selectively to phosphoproteins journal September 2011
The Click Triazolium Peptoid Side Chain: A Strong cis -Amide Inducer Enabling Chemical Diversity journal May 2012
Polypeptoid polymers: Synthesis, characterization, and properties journal October 2017
Expanded Polyglutamine-Binding Peptoid as a Novel Therapeutic Agent for Treatment of Huntington's Disease journal September 2011
Electrostatic Assemblies of Single-Walled Carbon Nanotubes and Sequence-Tunable Peptoid Polymers Detect a Lectin Protein and Its Target Sugars journal April 2019
Short Alkylated Peptoid Mimics of Antimicrobial Lipopeptides journal October 2010
A Peptoid Ribbon Secondary Structure journal April 2013
Peptoids as tools and sensors journal April 2019
Solid-Phase Synthesis of N-Substituted Glycine Oligomers (α‑Peptoids) and Derivatives journal August 2010
In Vivo, In Vitro, and In Silico Characterization of Peptoids as Antimicrobial Agents journal February 2016
Conformations of peptoids in nanosheets result from the interplay of backbone energetics and intermolecular interactions journal May 2018
Investigating the Anti-leishmanial Effects of Linear Peptoids journal December 2014
[25] Synthesis of N-substituted glycine peptoid libraries book January 1996
New Strategies for the Design of Folded Peptoids Revealed by a Survey of Noncovalent Interactions in Model Systems journal November 2009
A Peptoid Square Helix via Synergistic Control of Backbone Dihedral Angles journal June 2017
Liquid-Crystalline Phase Behavior in Polypeptoid Diblock Copolymers journal November 2018
Universal Relationship between Molecular Structure and Crystal Structure in Peptoid Polymers and Prevalence of the cis Backbone Conformation journal January 2018
Clickity-click: highly functionalized peptoid oligomers generated by sequential conjugation reactions on solid-phase support journal January 2006
Development of homomultimers and heteromultimers of lung cancer-specific peptoids journal January 2011
Enhanced detection of prion infectivity from blood by preanalytical enrichment with peptoid-conjugated beads journal September 2019
Learning from Host-Defense Peptides: Cationic, Amphipathic Peptoids with Potent Anticancer Activity journal February 2014
Imaging Unstained Synthetic Polymer Crystals and Defects on Atomic Length Scales Using Cryogenic Electron Microscopy journal September 2018
Highly stable and self-repairing membrane-mimetic 2D nanomaterials assembled from lipid-like peptoids journal July 2016
Designable and dynamic single-walled stiff nanotubes assembled from sequence-defined peptoids journal January 2018
Precisely tuneable energy transfer system using peptoid helix-based molecular scaffold journal July 2017
Ultra-Short Antimicrobial Peptoids Show Propensity for Membrane Activity Against Multi-Drug Resistant Mycobacterium tuberculosis journal March 2020
Unusual truncation of N-acylated peptoids under acidic conditions journal January 2014
Discovery of Stable and Selective Antibody Mimetics from Combinatorial Libraries of Polyvalent, Loop-Functionalized Peptoid Nanosheets journal December 2019
A cleavage method which minimizes side reactions following Fmoc solid phase peptide synthesis journal September 1990
A modular platform to develop peptoid-based selective fluorescent metal sensors journal January 2017
Synthesis and Characterization of Amphiphilic Cyclic Diblock Copolypeptoids from N -Heterocyclic Carbene-Mediated Zwitterionic Polymerization of N -Substituted N -Carboxyanhydride journal December 2011
A Peptoid-Based Fluorescent Sensor for Cyanide Detection journal March 2016
Unbiased Selection of Peptide–Peptoid Hybrids Specific for Lung Cancer Compared to Normal Lung Epithelial Cells journal October 2015
Unnatural amino acids improve affinity and modulate immunogenicity: Developing peptides to treat MHC type II autoimmune disorders journal March 2018
Advances in Development of Antimicrobial Peptidomimetics as Potential Drugs journal August 2017
Hierarchical Self-Assembly of a Biomimetic Diblock Copolypeptoid into Homochiral Superhelices journal November 2010
Peptoid-Peptide Hybrid Backbone Architectures journal December 2009
Peptomers: A Versatile Approach for the Preparation of Diverse Combinatorial Peptidomimetic Bead Libraries journal March 1997
A Readily Applicable Strategy to Convert Peptides to Peptoid-based Therapeutics journal March 2013
N -Naphthyl Peptoid Foldamers Exhibiting Atropisomerism journal January 2012
Accelerated Submonomer Solid-Phase Synthesis of Peptoids Incorporating Multiple Substituted N -Aryl Glycine Monomers journal August 2015
Mass spectrometry studies of the fragmentation patterns and mechanisms of protonated peptoids journal June 2020
Design, Synthesis, Assembly, and Engineering of Peptoid Nanosheets journal January 2016
The tert -Butyl Side Chain: A Powerful Means to Lock Peptoid Amide Bonds in the Cis Conformation journal April 2013
Strengthening Peptoid Helicity through Sequence Site-Specific Positioning of Amide cis -Inducing Nt Bu Monomers journal December 2019
Extreme stability of helices formed by water-soluble poly-N-substituted glycines (polypeptoids) with ?-chiral side chains journal December 2001
Cation-Induced Molecular Switching Based on Reversible Modulation of Peptoid Conformational States journal September 2018
Design of Peptoid-peptide Macrocycles to Inhibit the β-catenin TCF Interaction in Prostate Cancer journal October 2018
Poly(α-Peptoid)s Revisited: Synthesis, Properties, and Use as Biomaterial: Poly(α-Peptoid)s Revisited: Synthesis, Properties, and Use journal April 2015
Conformational Rearrangements by Water-Soluble Peptoid Foldamers journal October 2007
Peptoids: a modular approach to drug discovery. journal October 1992
Stereochemistry of polypeptoid chain configurations journal March 2019
Toward a clinical antifungal peptoid: Investigations into the therapeutic potential of AEC5 journal April 2019
Solution Self-Assemblies of Sequence-Defined Ionic Peptoid Block Copolymers journal February 2018
Extraordinarily Robust Polyproline Type I Peptoid Helices Generated via the Incorporation of α-Chiral Aromatic N -1-Naphthylethyl Side Chains journal October 2011
Peptoid Polymers: A Highly Designable Bioinspired Material journal May 2013
Structure–Conductivity Relationship for Peptoid-Based PEO–Mimetic Polymer Electrolytes journal June 2012
Self-assembly of crystalline nanotubes from monodisperse amphiphilic diblock copolypeptoid tiles journal March 2016
Morphology and Proton Transport in Humidified Phosphonated Peptoid Block Copolymers journal April 2016
High-Throughput Sequencing of Peptoids and Peptide−Peptoid Hybrids by Partial Edman Degradation and Mass Spectrometry journal March 2009
New submonomers for poly N-substituted glycines (peptoids) journal February 1999
DNA origami protection and molecular interfacing through engineered sequence-defined peptoids journal March 2020
The design, synthesis, and evaluation of molecules that enable or enhance cellular uptake: Peptoid molecular transporters journal November 2000
Cooperative Intramolecular Hydrogen Bonding Strongly Enforces cis -Peptoid Folding journal November 2019
Peptoid Oligomers with α-Chiral, Aromatic Side Chains:  Effects of Chain Length on Secondary Structure journal April 2001
Diblock copolypeptoids: a review of phase separation, crystallization, self-assembly and biological applications journal January 2020
Engineering the atomic structure of sequence-defined peptoid polymers and their assemblies journal August 2020
Thermoreversible and Injectable ABC Polypeptoid Hydrogels: Controlling the Hydrogel Properties through Molecular Design journal January 2016
Synthesis and Characterization of Well-Defined PEGylated Polypeptoids as Protein-Resistant Polymers journal February 2017
Atomic-level engineering and imaging of polypeptoid crystal lattices journal October 2019
A Universal Method for Detection of Amyloidogenic Misfolded Proteins journal May 2011
Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis journal December 1992
Discovery of Nanomolar Ligands for 7-Transmembrane G-Protein-Coupled Receptors from a Diverse N-(Substituted)glycine Peptoid Library journal August 1994

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