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Title: Clumped 13CH2D and 12CHD2 compositions of methyl groups from wood and synthetic monomers: Methods, experimental and theoretical calibrations, and initial results

Journal Article · · Geochimica et Cosmochimica Acta
 [1];  [2];  [2]
  1. Univ. of Californiaca, Berkeley, CA (United States)
  2. Univ. of Californiaca, Berkeley, CA (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Methyl groups are found in numerous biogenic and synthetic materials including geologically preserved materials such as wood. The carbon and hydrogen isotope compositions of methyl groups are used as tracers in biogeochemical cycles, as paleothermometers, and to determine the hydrogen isotopic composition of ancient rain. Here we present analyses of resolved 13C–D (13CH2D) and D–D (12CHD2) clumped isotope compositions of methyl groups as new variables for the study of methyl groups in the present and past. We first present chemical methods to extract, purify, and derivatize methyl groups from methoxyl (R–O–CH3) groups as CH3F and CH3Cl, and high-resolution mass spectrometric techniques to determine the clumped isotope compositions of these species. We achieve precisions for 13C–D clumping of ±0.25‰ and D–D clumping of ±2.5‰. We anchor our clumped isotopic measurements to a thermodynamic reference frame by first calculating the theoretical temperature dependences of 13C–D and D–D clumping in CH3Cl, then placing our measurements onto this reference frame through experimental internal isotopic equilibration of CH3Cl at 200 °C. Finally, we provide and analyze an initial dataset of clumped 13C–D and D–D compositions of methyl groups from various commercial/synthetic monomers and environmental woods. We observe ranges in clumped isotope compositions of ~11‰ in 13C–D and ~48‰ in D–D, and systematic differences within these ranges between methyl groups from commercial monomers and wood. Specifically, commercial clumped 13C–D compositions are between 0 and 3‰, which correspond to apparent equilibrium temperatures between 170 °C and the infinite temperature limit. In contrast, the clumped 13C–D compositions of wood methoxyl groups are distinctively high (9.50–11.25‰) and 3–6‰ higher than would be expected if formed in internal isotopic equilibrium at Earth-surface temperatures. Commercial/synthetic methyl and wood methoxyl clumped D–D compositions are also distinct: -5 to +13‰ in commercial monomers vs. -35 to -8‰ in wood—such negative values cannot result from formation in isotopic equilibrium and require kinetic processes to have occurred. Overall, these results indicate that wood methoxyl groups are formed out of isotopic equilibrium and that clumped isotope compositions of methyl groups may be useful tracers of methyl group sources and sinks in the environment. For instance, isotopic clumping in methyl groups may be useful for understanding controls on isotopic clumping in methane produced by methylotrophic methanogens.

Research Organization:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division; USDOE
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1837044
Alternate ID(s):
OSTI ID: 1775806
Journal Information:
Geochimica et Cosmochimica Acta, Vol. 297; ISSN 0016-7037
Publisher:
Elsevier; The Geochemical Society; The Meteoritical SocietyCopyright Statement
Country of Publication:
United States
Language:
English

References (79)

What Fractionates Oxygen Isotopes during Respiration? Insights from Multiple Isotopologue Measurements and Theory journal December 2019
Improved rapid authentication of vanillin using δ13C and δ2H values journal August 2010
In Situ Quantification of Biological N 2 Production Using Naturally Occurring 15 N 15 N journal April 2019
Methane seep carbonates yield clumped isotope signatures out of equilibrium with formation temperatures journal July 2016
Electrophilic reactions at single bonds. 20. Selective monohalogenation of methane over supported acidic or platinum metal catalysts and hydrolysis of methyl halides over .gamma.-alumina-supported metal oxide/hydroxide catalysts. A feasible path for the oxidative conversion of methane into methyl alcohol/dimethyl ether journal November 1985
The thermodynamic properties of isotopic substances journal January 1947
Recent advances in the selective formation of the carbon-fluorine bond journal June 1992
Activation of platinum-alumina catalysts for the hydrogenation of aromatic hydrocarbons journal January 1976
A full coupled‐cluster singles and doubles model: The inclusion of disconnected triples journal February 1982
Calculation of Equilibrium Constants for Isotopic Exchange Reactions journal May 1947
Distinguishing and understanding thermogenic and biogenic sources of methane using multiply substituted isotopologues journal July 2015
DNA methylation and human disease journal August 2005
Experimental investigation on the controls of clumped isotopologue and hydrogen isotope ratios in microbial methane journal September 2018
Measurement of rare isotopologues of nitrous oxide by high-resolution multi-collector mass spectrometry: Measurement of rare isotopologues of nitrous oxide journal August 2016
Least squares fitting of a straight line with correlated errors journal January 1968
Pyrolysis of chloromethanes journal August 2000
The Isotopic Anatomies of Molecules and Minerals journal May 2013
A process-based model for non-equilibrium clumped isotope effects in carbonates journal December 2015
Heterolysis and the Pyrolysis of Alkyl Halides in the Gas Phase journal February 1969
Gaussian basis sets for use in correlated molecular calculations. I. The atoms boron through neon and hydrogen journal January 1989
Biological signatures in clumped isotopes of O2 journal April 2015
Equilibrium thermodynamics of multiply substituted isotopologues of molecular gases journal December 2004
Diverse origins of Arctic and Subarctic methane point source emissions identified with multiply-substituted isotopologues journal September 2016
Extreme enrichment in atmospheric 15 N 15 N journal November 2017
18O13C16O in Earth’s atmosphere journal December 2004
Optimization of on-line hydrogen stable isotope ratio measurements of halogen- and sulfur-bearing organic compounds using elemental analyzer-chromium/high-temperature conversion isotope ratio mass spectrometry (EA-Cr/HTC-IRMS): On-line hydrogen isotope measurements of halogenated compounds journal February 2017
Electron affinities of the first‐row atoms revisited. Systematic basis sets and wave functions journal May 1992
Isotopic ordering in atmospheric O 2 as a tracer of ozone photochemistry and the tropical atmosphere : ISOTOPIC ORDERING IN ATMOSPHERIC O journal October 2016
Authentication of the Origin of Vanillin Using Quantitative Natural Abundance 13 C NMR journal December 2004
Stable hydrogen isotope ratios of lignin methoxyl groups as a paleoclimate proxy and constraint of the geographical origin of wood journal November 2007
Clumped Isotopes Link Older Carbon Substrates With Slower Rates of Methanogenesis in Northern Lakes journal March 2020
Novel Method for the Determination of the Methoxyl Content in Lignin by Headspace Gas Chromatography journal May 2012
Mean annual temperatures of mid-latitude regions derived from δ2H values of wood lignin methoxyl groups and its implications for paleoclimate studies journal January 2017
A rapid and precise method for determination of D/H ratios of plant methoxyl groups: Determination of D/H ratios of plant methoxyl groups journal November 2008
Beyond temperature: Clumped isotope signatures in dissolved inorganic carbon species and the influence of solution chemistry on carbonate mineral composition journal October 2015
Modern methods for the introduction of fluorine into organic molecules: an approach to compounds with altered chemical and biological activities journal January 1987
A large-radius high-mass-resolution multiple-collector isotope ratio mass spectrometer for analysis of rare isotopologues of O2, N2, CH4 and other gases journal April 2016
Multi-factorial in vivo stable isotope fractionation: causes, correlations, consequences and applications journal January 2015
Global Biogeochemical Cycling of Mercury: A Review journal November 2009
Fractionation of the methane isotopologues 13CH4, 12CH3D, and 13CH3D during aerobic oxidation of methane by Methylococcus capsulatus (Bath) journal November 2016
Measurements of 18 O 18 O and 17 O 18 O in the atmosphere and the role of isotope-exchange reactions journal September 2012
Lignin methoxyl hydrogen isotope ratios in a coastal ecosystem journal November 2013
Kinetic clumped isotope fractionation in the DIC-H2O-CO2 system: Patterns, controls, and implications journal January 2020
13C–18O bonds in carbonate minerals: A new kind of paleothermometer journal March 2006
Mechanism of the reaction of alkyl bromides and iodides with mercury(II) and silver(I) fluorides journal March 1975
Density‐functional thermochemistry. III. The role of exact exchange journal April 1993
Combinatorial effects on clumped isotopes and their significance in biogeochemistry journal January 2016
Methane sources and sinks in continental sedimentary systems: New insights from paired clumped isotopologues 13CH3D and 12CH2D2 journal January 2019
Characterizing lignin: Combining lignin phenol, methoxy quantification, and dual stable carbon and hydrogen isotopic techniques journal October 2019
Formation temperatures of thermogenic and biogenic methane journal June 2014
Methoxyl groups of plant pectin as a precursor of atmospheric methane: evidence from deuterium labelling studies journal June 2008
Nonequilibrium clumped isotope signals in microbial methane journal March 2015
Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density journal January 1988
A reconnaissance study of 13C–13C clumping in ethane from natural gas journal February 2018
Methods and limitations of ‘clumped’ CO 2 isotope (Δ 47 ) analysis by gas-source isotope ratio mass spectrometry journal September 2009
Hydrogen/Deuterium (H/D) Exchange Catalysis in Alkanes journal January 2018
Low Δ 12 CH 2 D 2 values in microbialgenic methane result from combinatorial isotope effects journal September 2020
A Technique for the Determination of 18 O/ 16 O and 17 O/ 16 O Isotopic Ratios in Water from Small Liquid and Solid Samples journal April 2002
The relative abundances of resolved l2CH2D2 and 13CH3D and mechanisms controlling isotopic bond ordering in abiotic and biotic methane gases journal April 2017
Organic Reference Materials for Hydrogen, Carbon, and Nitrogen Stable Isotope-Ratio Measurements: Caffeines, n -Alkanes, Fatty Acid Methyl Esters, Glycines, l -Valines, Polyethylenes, and Oils journal March 2016
Trans‐methylation reactions in plants: focus on the activated methyl cycle journal October 2017
Reaction of single crystals of potassium bromide with chlorine gas journal January 1963
Methane clumped isotopes: Progress and potential for a new isotopic tracer journal November 2017
�ber ein Verfahren zum quantitativen Nachweise von Methoxyl journal December 1885
Comparison of Experimental vs Theoretical Abundances of 13 CH 3 D and 12 CH 2 D 2 for Isotopically Equilibrated Systems from 1 to 500 °C journal October 2019
H 2 clumped isotope measurements at natural isotopic abundances journal January 2019
Radical S -Adenosylmethionine Enzymes in Human Health and Disease journal June 2016
“Clumped-isotope” geochemistry—The study of naturally-occurring, multiply-substituted isotopologues journal October 2007
Mechanisms of the HF/H 2 O vapor phase etching of SiO 2 journal July 1992
Measurement of a Doubly Substituted Methane Isotopologue, 13 CH 3 D, by Tunable Infrared Laser Direct Absorption Spectroscopy journal June 2014
Earliest Eocene cold period and polar amplification - Insights from δ2H values of lignin methoxyl groups of mummified wood journal September 2018
Carbon isotopes in vanillin and the detection of falsified natural vanillin journal November 1983
Isotopic fractionation and the quantification of 17 O anomalies in the oxygen three-isotope system journal June 2002
Note on an Approximation Treatment for Many-Electron Systems journal October 1934
Combined 13C–D and D–D clumping in methane: Methods and preliminary results journal February 2014
fractionation in the system methane-hydrogen-water journal December 1995
Pyrolysis of methyl chloride, a pathway in the chlorine-catalyzed polymerization of methane journal April 1984
Defining an absolute reference frame for ‘clumped’ isotope studies of CO2 journal November 2011
Mass-dependent fractionation of quadruple stable sulfur isotope system as a new tracer of sulfur biogeochemical cycles journal May 2006