A Quantitative System-Scale Characterization of the Metabolism of Clostridium acetobutylicum
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November 2015 |
Computational methods in metabolic engineering for strain design
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Glycolysis without pyruvate kinase in Clostridium thermocellum
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Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression
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January 2012 |
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
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Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome
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September 2016 |
High-throughput generation, optimization and analysis of genome-scale metabolic models
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August 2010 |
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
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August 2019 |
Systematic Evaluation of Methods for Integration of Transcriptomic Data into Constraint-Based Models of Metabolism
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April 2014 |
Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol
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June 2017 |
Elucidating central metabolic redox obstacles hindering ethanol production in Clostridium thermocellum
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November 2015 |
Multiobjective strain design: A framework for modular cell engineering
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January 2019 |
KEGG: Kyoto Encyclopedia of Genes and Genomes
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January 2000 |
Systems Biology
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January 2015 |
Elimination of metabolic pathways to all traditional fermentation products increases ethanol yields in Clostridium thermocellum
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November 2015 |
MinGenome: An In Silico Top-Down Approach for the Synthesis of Minimized Genomes
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January 2018 |
Rational design of efficient modular cells
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November 2015 |
Genome-scale model for Clostridium acetobutylicum : Part I. Metabolic network resolution and analysis
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December 2008 |
The emergence of Clostridium thermocellum as a high utility candidate for consolidated bioprocessing applications
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August 2014 |
Rescuing Those Left Behind: Recovering and Characterizing Underdigested Membrane and Hydrophobic Proteins To Enhance Proteome Measurement Depth
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July 2015 |
Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production
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January 2010 |
Comparison of Multi-Objective Evolutionary Algorithms to Solve the Modular Cell Design Problem for Novel Biocatalysis
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June 2019 |
MEMOTE for standardized genome-scale metabolic model testing
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March 2020 |
When will fossil fuel reserves be diminished?
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January 2009 |
The Path Forward for Biofuels and Biomaterials
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January 2006 |
Network rigidity and metabolic engineering in metabolite overproduction
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June 1991 |
Endogenous carbohydrate esterases of Clostridium thermocellum are identified and disrupted for enhanced isobutyl acetate production from cellulose
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May 2020 |
Constraint-based genome-scale metabolic modeling of Clostridium acetobutylicum behavior in an immobilized column
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August 2013 |
Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans
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July 2014 |
DanteR: an extensible R-based tool for quantitative analysis of -omics data
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July 2012 |
Systems metabolic engineering: Genome-scale models and beyond
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February 2010 |
Redirecting carbon flux through exogenous pyruvate kinase to achieve high ethanol yields in Clostridium thermocellum
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January 2013 |
Recent progress in consolidated bioprocessing
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June 2012 |
Nitrogen and sulfur requirements for Clostridium thermocellum and Caldicellulosiruptor bescii on cellulosic substrates in minimal nutrient media
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February 2013 |
Engineering electron metabolism to increase ethanol production in Clostridium thermocellum
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January 2017 |
Cellulose utilization by Clostridium thermocellum: Bioenergetics and hydrolysis product assimilation
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May 2005 |
Development of a core Clostridium thermocellum kinetic metabolic model consistent with multiple genetic perturbations
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May 2017 |
Metabolic engineering of Escherichia coli for direct production of 1,4-butanediol
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May 2011 |
High Ethanol Titers from Cellulose by Using Metabolically Engineered Thermophilic, Anaerobic Microbes
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September 2011 |
Harnessing Natural Modularity of Metabolism with Goal Attainment Optimization to Design a Modular Chassis Cell for Production of Diverse Chemicals
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May 2020 |
Atypical Glycolysis in Clostridium thermocellum
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February 2013 |
Alcohol Selectivity in a Synthetic Thermophilic n -Butanol Pathway Is Driven by Biocatalytic and Thermostability Characteristics of Constituent Enzymes
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August 2015 |
COBRApy: COnstraints-Based Reconstruction and Analysis for Python
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January 2013 |
A protocol for generating a high-quality genome-scale metabolic reconstruction
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January 2010 |
Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum
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June 2016 |
KBase: The United States Department of Energy Systems Biology Knowledgebase
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July 2018 |
The surprising diversity of clostridial hydrogenases: a comparative genomic perspective
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April 2010 |
Civil conflicts are associated with the global climate
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August 2011 |
Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum
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September 2019 |
Advances in de novo strain design using integrated systems and synthetic biology tools
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October 2015 |
Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing
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July 2010 |
Capturing the response of Clostridium acetobutylicumto chemical stressors using a regulated genome-scale metabolic model
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October 2014 |
A Protocol for Generating and Exchanging (Genome-Scale) Metabolic Resource Allocation Models
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September 2017 |
Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii
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January 2013 |
Elimination of hydrogenase active site assembly blocks H2 production and increases ethanol yield in Clostridium thermocellum
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January 2015 |
IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering
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August 2009 |
Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism
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January 2017 |
Metabolic modeling of clostridia: current developments and applications
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January 2016 |
Sampling the Solution Space in Genome-Scale Metabolic Networks Reveals Transcriptional Regulation in Key Enzymes
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July 2010 |
Modular design: Implementing proven engineering principles in biotechnology
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November 2019 |
Microbial biosynthesis of lactate esters
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September 2019 |
Multi-omic data integration enables discovery of hidden biological regularities
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October 2016 |
Overflow metabolism and growth cessation in Clostridium thermocellum DSM1313 during high cellulose loading fermentations : Overflow Metabolism and Growth Cessation in
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August 2017 |
Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints
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June 2018 |
Single mutation at a highly conserved region of chloramphenicol acetyltransferase enables isobutyl acetate production directly from cellulose by Clostridium thermocellum at elevated temperatures
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October 2019 |
The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli
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June 2008 |
Elimination of Thermodynamically Infeasible Loops in Steady-State Metabolic Models
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February 2011 |
Elucidating and reprogramming Escherichia coli metabolisms for obligate anaerobic n-butanol and isobutanol production
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June 2012 |
The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading
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October 2014 |
MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis
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February 2007 |
Consolidated bioprocessing of cellulose to isobutanol using Clostridium thermocellum
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September 2015 |
iML1515, a knowledgebase that computes Escherichia coli traits
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October 2017 |
Elementary mode analysis: a useful metabolic pathway analysis tool for characterizing cellular metabolism
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November 2008 |
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052
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January 2011 |
Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico
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January 2012 |