Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)

Lapidus, Alla; Nolan, Matt; Lucas, Susan; Glavina Del Rio, Tijana; Tice, Hope; Cheng, Jan-Fang; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Pitluck, Sam; Liolios, Konstantinos; Pagani, Ioanna; Ivanova, Natalia; Huntemann, Marcel; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Brambilla, Evelyne-Marie; Rohde, Manfred; Abt, Birte; Verbarg, Susanne; Göker, Markus; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter; Woyke, Tanja

doi:10.4056/sigs.2344929

Title: Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2^T)

Journal Article · Sat Dec 31 00:00:00 EST 2011 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.2344929· OSTI ID:1630579

Lapidus, Alla ^[1]; Nolan, Matt ^[1]; Lucas, Susan ^[1]; Glavina Del Rio, Tijana ^[1]; Tice, Hope ^[1]; Cheng, Jan-Fang ^[1]; Tapia, Roxanne ^[2]; Han, Cliff ^[2]; Goodwin, Lynne ^[2]; Pitluck, Sam ^[1]; Liolios, Konstantinos ^[1]; Pagani, Ioanna ^[1]; Ivanova, Natalia ^[1]; Huntemann, Marcel ^[1]; Mavromatis, Konstantinos ^[1]; Mikhailova, Natalia ^[1]; Pati, Amrita ^[1]; Chen, Amy ^[3]; Palaniappan, Krishna ^[3]; Land, Miriam ^[4] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
Helmholtz Centre for Infection Research, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of Queensland, Brisbane, QLD (Australia)

Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region of the tree of life, but also because of its life-style with gliding gonidia, the multilayer sheath, rosettes, and the embedded sulfur granules. Strain JP2^T is the neotype strain of the species which was first observed by Rabenhorst in 1865 and later reclassified by Winogradsky in 1888 into the then novel genus Thiothrix. This is the first completed (improved-high-quality-draft) genome sequence to be published of a member of the family Thiotrichaceae. The genome in its current assembly consists of 15 contigs in four scaffolds with a total of 4,691,711 bp bearing 4,542 protein-coding and 52 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

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Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); German Research Foundation (DFG)

Grant/Contract Number:: AC02-05CH11231; AC52-07NA27344; AC02-06NA25396; AC05-00OR22725; INST 599/1-1

OSTI ID:: 1630579

Journal Information:: Standards in Genomic Sciences, Vol. 5, Issue 3; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 11 works

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Title: Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)

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