skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.1423520· OSTI ID:1629408
 [1];  [2];  [3];  [4];  [5];  [6];  [7];  [8];  [9];  [10];  [9];  [11]
  1. Argonne National Lab. (ANL), Argonne, IL (United States)
  2. Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Chicago, Chicago, IL (United States). Computation Inst.
  3. Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Chicago, Chicago, IL (United States). Dept. of Ecology and Evolution
  4. Centre for Ecology & Hydrology, Oxfordshire (United Kingdom)
  5. European Bioinformatics Institute (EBI), Hinxton, Cambridge (United Kingdom). European Molecular Biology Laboratory (EMBL) Outstation
  6. Max Planck Inst. for Marine Microbiology, Bremen (Germany). Microbial Genomics Group; Jacobs Univ. Bremen (Germany)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  8. Univ. of Oxford (United Kingdom)
  9. Univ. of Maryland Baltimore County (UMBC), Baltimore, MD (United States). Inst. for Genome Sciences
  10. Wellcome Trust Sanger Inst., Hinxton, Cambridge (United Kingdom)
  11. Univ. of California San Diego, La Jolla, CA (United Kingdom)
+ Show Author Affiliations

This report summarizes the proceedings of the 10th workshop of the Genomic Standards Consortium (GSC), held at Argonne National Laboratory, IL, USA. It was the second GSC workshop to have open registration and attracted over 60 participants who worked together to progress the full range of projects ongoing within the GSC. Overall, the primary focus of the workshop was on advancing the M5 platform for next-generation collaborative computational infrastructures. Other key outcomes included the formation of a GSC working group focused on MIGS/MIMS/MIENS compliance using the ISA software suite and the formal launch of the GSC Developer Working Group. Further information about the GSC and its range of activities can be found at http://gensc.org/.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; National Science Foundation (NSF); Gordon and Betty Moore Foundation; BGI; DigiBio; Michigan State University Foundation
Grant/Contract Number:
RCN4GSC; DBI-0840989
OSTI ID:
1629408
Journal Information:
Standards in Genomic Sciences, Vol. 3, Issue 3; Conference: 10.Workshop of the Genomic Standards Consortium (GSC), Argonne, IL (United States), 4-6 Oct 2010; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

References (20)

The minimum information about a genome sequence (MIGS) specification journal May 2008
Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata journal June 2008
Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species journal November 2009
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata journal November 2009
Laying the Foundation for a Genomic Rosetta Stone: Creating Information Hubs through the Use of Consensus Identifiers journal June 2008
CAMERA: A Community Resource for Metagenomics journal March 2007
Metagenomics versus Moore's law journal September 2009
ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level journal August 2010
Taverna: a tool for the composition and enactment of bioinformatics workflows journal June 2004
The “Minimum Information about an ENvironmental Sequence” (MIENS) specification journal November 2010
Open software for biologists: from famine to feast journal July 2006
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea journal December 2009
QIIME allows analysis of high-throughput community sequencing data journal April 2010
Meeting Report: The Fifth Genomic Standards Consortium (GSC) Workshop journal June 2008
Infant gut microbiota characteristics generally do not modify effects of lipid-based nutrient supplementation on growth or inflammation: secondary analysis of a randomized controlled trial in Malawi journal September 2020
A Standard MIGS/MIMS Compliant XML Schema: Toward the Development of the Genomic Contextual Data Markup Language (GCDML) journal June 2008
Toward a Standards-Compliant Genomic and Metagenomic Publication Record journal June 2008
Software Design for Empowering Scientists journal January 2009
Kepler: an extensible system for design and execution of scientific workflows conference January 2004
Meeting Report from the Genomic Standards Consortium (GSC) Workshops 6 and 7 journal July 2009

Cited By (6)

A preliminary metagenomic study of puer tea during pile fermentation: Metagenomic study of puer tea during pile fermentation journal April 2013
Experimental and analytical tools for studying the human microbiome journal December 2011
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata journal December 2011
A preliminary metagenomic study of puer tea during pile fermentation: A preliminary metagenomic study of puer tea during pile fermentation journal July 2013
EBI metagenomics—a new resource for the analysis and archiving of metagenomic data journal October 2013
The first special issue of Standards in Genomic Sciences from the Genomic Standards Consortium journal January 2010

Similar Records

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 9
Journal Article · Fri Dec 31 00:00:00 EST 2010 · Standards in Genomic Sciences · OSTI ID:1629408
+13 more
Meeting Report from the Genomic Standards Consortium (GSC) Workshop 8
Journal Article · Fri Aug 20 00:00:00 EDT 2010 · Standards in Genomic Sciences · OSTI ID:1629408
+6 more
Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012.
Journal Article · Sun Jun 15 00:00:00 EDT 2014 · Standards in Genomic Sciences · OSTI ID:1629408
+16 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Virtual Machine
Argonne National Laboratory
Contextual Data
Genomic Standard Consortium
Developer Group