Global changes in mineral transporters in tetraploid switchgrasses (Panicum virgatum L.)

Palmer, Nathan A.; Saathoff, Aaron J.; Waters, Brian M.; Donze, Teresa; Heng-Moss, Tiffany M.; Twigg, Paul; Tobias, Christian M.; Sarath, Gautam

doi:10.3389/fpls.2013.00549

Title: Global changes in mineral transporters in tetraploid switchgrasses (Panicum virgatum L.)

Journal Article · Thu Jan 02 00:00:00 EST 2014 · Frontiers in Plant Science

DOI:https://doi.org/10.3389/fpls.2013.00549· OSTI ID:1628249

Palmer, Nathan A. ^[1]; Saathoff, Aaron J. ^[2]; Waters, Brian M. ^[3]; Donze, Teresa ^[3]; Heng-Moss, Tiffany M. ^[3]; Twigg, Paul ^[3]; Tobias, Christian M. ^[4]; Sarath, Gautam ^[5]

US Department of Agriculture (USDA), Lincoln, NE (United States); University of Nebraska, Lincoln, NE (United States)
US Department of Agriculture (USDA), Lincoln, NE (United States); LI-COR Biosciences, Lincoln, NE (United States)
University of Nebraska, Lincoln, NE (United States)
US Department of Agriculture (USDA), Albany, CA (United States)
US Department of Agriculture (USDA), Lincoln, NE (United States)

Switchgrass (Panicum virgatum L) is perennial, C4 grass with great potential as a biofuel crop. An in-depth understanding of the mechanisms that control mineral uptake, distribution and remobilization will benefit sustainable production. Nutrients are mobilized from aerial portions to below-ground crowns and rhizomes as a natural accompaniment to above-ground senescence post seed-set. Mineral uptake and remobilization is dependent on transporters, however, little if any information is available about the specific transporters that are needed and how their relative expression changes over a growing season. Using well-defined classes of mineral transporters, we identified 520 genes belonging to 40 different transporter classes in the tetraploid switchgrass genome. Expression patterns were determined for many of these genes using publically available transcriptomic datasets obtained from both greenhouse and field grown plants. Certain transporters showed strong temporal patterns of expression in distinct developmental stages of the plant. Gene-expression was verified for selected transporters using qRT-PCR. By and large these analyses confirmed the developmental stage-specific expression of these genes. Mineral analyses indicated that K, Fe, Mg, Co, and As had a similar pattern of accumulation with apparent limited remobilization at the end of the growing season. These initial analyses will serve as a foundation for more detailed examination of the nutrient biology of switchgrass.

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Research Organization:: Univ. of Nebraska, Lincoln, NE (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER); US Department of Agriculture (USDA)

Grant/Contract Number:: AI02-09ER64829; SC0001490

OSTI ID:: 1628249

Journal Information:: Frontiers in Plant Science, Vol. 4; ISSN 1664-462X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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Title: Global changes in mineral transporters in tetraploid switchgrasses (Panicum virgatum L.)

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