MouseFinder: Candidate disease genes from mouse phenotype data
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journal
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March 2012 |
ZFIN: enhancements and updates to the zebrafish model organism database
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journal
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October 2010 |
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes
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journal
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October 2015 |
A Unified Anatomy Ontology of the Vertebrate Skeletal System
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text
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January 2012 |
Use of Model Organism and Disease Databases to Support Matchmaking for Human Disease Gene Discovery
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journal
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September 2015 |
Semantic Similarity from Natural Language and Ontology Analysis
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journal
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May 2015 |
Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems
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journal
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January 2018 |
Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs
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journal
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August 2014 |
Text-mining solutions for biomedical research: enabling integrative biology
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text
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January 2012 |
New routes for transgenesis of the mouse
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journal
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May 2012 |
The digital revolution in phenotyping
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text
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January 2016 |
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species
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journal
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November 2016 |
Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research
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journal
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January 2013 |
Disease insights through cross-species phenotype comparisons
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journal
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June 2015 |
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora
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journal
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January 2015 |
Biological network extraction from scientific literature: state of the art and challenges
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journal
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February 2013 |
Eyeless/Pax6 initiates eye formation non-autonomously from the peripodial epithelium
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journal
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January 2018 |
Construction and accessibility of a cross-species phenotype ontology along with gene annotations for biomedical research
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journal
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January 2013 |
A large-scale dataset of in vivo pharmacology assay results
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journal
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October 2018 |
HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
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journal
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January 2018 |
The Human Phenotype Ontology in 2017
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journal
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November 2016 |
Using the Phenoscape Knowledgebase to relate genetic perturbations to phenotypic evolution
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journal
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May 2015 |
Analysis of the human diseasome using phenotype similarity between common, genetic and infectious diseases
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journal
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June 2015 |
Ontological phenotype standards for neurogenetics
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journal
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July 2012 |
The role of ontologies in biological and biomedical research: a functional perspective
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journal
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April 2015 |
The anatomy of phenotype ontologies: principles, properties and applications
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journal
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April 2017 |
An analysis and comparison of the statistical sensitivity of semantic similarity metrics
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posted_content
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January 2018 |
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
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journal
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January 2014 |
A Semantic Model for Species Description Applied to the Ensign Wasps (Hymenoptera: Evaniidae) of New Caledonia
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journal
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May 2013 |
The Human Phenotype Ontology in 2017.
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text
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January 2017 |
The digital revolution in phenotyping
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journal
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September 2015 |
The Cognitive Paradigm Ontology: Design and Application
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journal
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June 2011 |
Prioritizing human cancer microRNAs based on genes’ functional consistency between microRNA and cancer
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journal
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October 2011 |
Next-generation diagnostics and disease-gene discovery with the Exomiser
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journal
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November 2015 |
Linking tissues to phenotypes using gene expression profiles
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journal
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January 2014 |
PhenomeNET: a whole-phenome approach to disease gene discovery
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journal
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July 2011 |
BioHackathon 2015: Semantics of data for life sciences and reproducible research
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journal
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January 2020 |
The need for data standards in zoomorphology
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journal
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March 2013 |
Reporting phenotypes in mouse models when considering body size as a potential confounder
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journal
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February 2016 |
Uberon, an integrative multi-species anatomy ontology
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journal
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January 2012 |
Phenotype Ontologies and Cross-Species Analysis for Translational Research
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journal
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April 2014 |
Mapping gene regulatory circuitry of Pax6 during neurogenesis
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journal
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February 2016 |
The anatomy of phenotype ontologies: principles, properties and applications
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text
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January 2017 |
An ontology approach to comparative phenomics in plants
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journal
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January 2015 |
PhenomeNET: a whole-phenome approach to disease gene discovery.
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text
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January 2011 |
A Semantic Model for Species Description Applied to the Ensign Wasps (Hymenoptera: Evaniidae) of New Caledonia
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text
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January 2013 |
Longitudinal analysis of pain in patients with metastatic prostate cancer using natural language processing of medical record text
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journal
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September 2013 |
Semantic Similarity from Natural Language and Ontology Analysis
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text
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January 2017 |
Calculating structural complexity in phylogenies using ancestral ontologies
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journal
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April 2014 |
Incremental data integration for tracking genotype-disease associations
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journal
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January 2020 |
Trait ontology analysis based on association mapping studies bridges the gap between crop genomics and Phenomics
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journal
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June 2019 |
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species
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journal
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November 2019 |
Finding Our Way through Phenotypes
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journal
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January 2015 |
Big Semantic Data Processing in the Life Sciences Domain
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book
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January 2018 |
A Unified Anatomy Ontology of the Vertebrate Skeletal System
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journal
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December 2012 |
PhenoDigm: analyzing curated annotations to associate animal models with human diseases
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journal
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January 2013 |
Xenbase: expansion and updates of the Xenopus model organism database
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journal
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November 2012 |
Text-mining solutions for biomedical research: enabling integrative biology
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journal
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November 2012 |
An online tool for measuring and visualizing phenotype similarities using HPO
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journal
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August 2018 |
Semantic Similarity-Driven Decision Support in the Skeletal Dysplasia Domain
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book
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January 2012 |
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species
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journal
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August 2013 |
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes
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text
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January 2016 |
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon
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text
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January 2014 |
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
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journal
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November 2013 |
Big Semantic Data Processing in the Life Sciences Domain
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book
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January 2019 |
Uses of Informatics to Solve Real World Problems in Veterinary Medicine
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journal
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June 2011 |
Using association rule mining to determine promising secondary phenotyping hypotheses
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journal
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June 2014 |
A survey of semantic relatedness evaluation datasets and procedures
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journal
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December 2019 |
Biological network extraction from scientific literature: state of the art and challenges
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text
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January 2014 |
dcGO: database of domain-centric ontologies on functions, phenotypes, diseases and more
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journal
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November 2012 |
Using the phenoscape knowledgebase to relate genetic perturbations to phenotypic evolution: from genes to evolutionary phenotypes
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journal
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August 2015 |
The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data
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journal
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September 2012 |
Medical 3D printing: methods to standardize terminology and report trends
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journal
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March 2017 |
The role of protein interaction networks in systems biomedicine
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journal
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August 2014 |
Evaluation of research in biomedical ontologies
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journal
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September 2012 |
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy
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journal
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June 2010 |
Phenoclustering: online mining of cross-species phenotypes
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journal
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June 2010 |
CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses
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journal
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January 2011 |
The RIKEN integrated database of mammals
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journal
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November 2010 |
Phenotypes in insect biodiversity research
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posted_content
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November 2015 |
Capturing phenotypes for precision medicine
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journal
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September 2015 |
MicroRNAs and Induced Pluripotent Stem Cells for Human Disease Mouse Modeling
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journal
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January 2012 |
Correlating Information Contents of Gene Ontology Terms to Infer Semantic Similarity of Gene Products
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journal
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January 2014 |
Use of Biomedical Ontologies for Integration of Biological Knowledge for Learning and Prediction of Adverse Drug Reactions
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journal
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January 2017 |
Worm Phenotype Ontology: Integrating phenotype data within and beyond the C. elegans community
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journal
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January 2011 |
Logical Development of the Cell Ontology
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journal
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January 2011 |
Supervised segmentation of phenotype descriptions for the human skeletal phenome using hybrid methods
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journal
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October 2012 |
Use of animal models for exome prioritization of rare disease genes
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journal
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January 2014 |
Disjunctive shared information between ontology concepts: application to Gene Ontology
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journal
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January 2011 |
Anatomy ontologies and potential users: bridging the gap
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journal
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January 2011 |
Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
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journal
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April 2012 |
Towards improving phenotype representation in OWL
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journal
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January 2012 |
The mouse pathology ontology, MPATH; structure and applications
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journal
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January 2013 |
Using ontologies to study cell transitions
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journal
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January 2013 |
Thematic series on biomedical ontologies in JBMS: challenges and new directions
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journal
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January 2014 |
The influence of disease categories on gene candidate predictions from model organism phenotypes
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journal
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January 2014 |
Integrating phenotype ontologies across multiple species
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journal
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January 2010 |
Toward knowledge support for analysis and interpretation of complex traits
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journal
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January 2013 |
Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO
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journal
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April 2019 |
Linking gene expression to phenotypes via pathway information
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journal
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April 2015 |
Representing vision and blindness
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journal
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March 2016 |
Phenotypic overlap in the contribution of individual genes to CNV pathogenicity revealed by cross-species computational analysis of single-gene mutations in humans, mice and zebrafish
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journal
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October 2012 |
Ontologies in Quantitative Biology: A Basis for Comparison, Integration, and Discovery
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journal
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May 2010 |
Evolutionary Characters, Phenotypes and Ontologies: Curating Data from the Systematic Biology Literature
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journal
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May 2010 |
Laboratory Mouse Models for the Human Genome-Wide Associations
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journal
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November 2010 |
Inference of Gene-Phenotype Associations via Protein-Protein Interaction and Orthology
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journal
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October 2013 |
HPOSim: An R Package for Phenotypic Similarity Measure and Enrichment Analysis Based on the Human Phenotype Ontology
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journal
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February 2015 |
Improving ontologies by automatic reasoning and evaluation of logical definitions
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text
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January 2011 |
The AEO, an Ontology of Anatomical Entities for Classifying Animal Tissues and Organs
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journal
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January 2012 |
Defining Disease, Diagnosis, and Translational Medicine within a Homeostatic Perturbation Paradigm: The National Institutes of Health Undiagnosed Diseases Program Experience
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journal
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May 2017 |
Referee report. For: BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]
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text
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January 2020 |