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Title: Structural insights into Noonan/LEOPARD syndrome-related mutants of protein-tyrosine phosphatase SHP2 (PTPN11)

Journal Article · · BMC Structural Biology (Online)
 [1];  [2];  [1];  [1];  [1];  [1];  [3];  [4];  [2];  [5]
  1. Univ. Health Network, Toronto, ON (Canada). Princess Margaret Center
  2. Univ. Health Network, Toronto, ON (Canada). Princess Margaret Center; Univ. of Toronto, ON (Canada). Dept. of Medical Biophysics
  3. Argonne National Lab. (ANL), Argonne, IL (United States). Advanced Photon Source (APS). Hauptman-Woodward Medical Research Inst, IMCA-CAT
  4. Univ. Health Network, Toronto, ON (Canada). Princess Margaret Center; Univ. of Toronto, ON (Canada). Dept. of Biochemistry, Molecular Genetics and Medical Biophysics
  5. Univ. Health Network, Toronto, ON (Canada). Princess Margaret Center; Univ. of Toronto, ON (Canada). Dept. of Pharmacology and Toxicology

Background: The ubiquitous non-receptor protein tyrosine phosphatase SHP2 (encoded by PTPN11) plays a key role in RAS/ERK signaling downstream of most, if not all growth factors, cytokines and integrins, although its major substrates remain controversial. Mutations in PTPN11 lead to several distinct human diseases. Germ-line PTPN11 mutations cause about 50% of Noonan Syndrome (NS), which is among the most common autosomal dominant disorders. LEOPARD Syndrome (LS) is an acronym for its major syndromic manifestations: multiple Lentigines, Electrocardiographic abnormalities, Ocular hypertelorism, Pulmonary stenosis, Abnormalities of genitalia, Retardation of growth, and sensorineural Deafness. Frequently, LS patients have hypertrophic cardiomyopathy, and they might also have an increased risk of neuroblastoma (NS) and acute myeloid leukemia (AML). Consistent with the distinct pathogenesis of NS and LS, different types of PTPN11 mutations cause these disorders. Results: Although multiple studies have reported the biochemical and biological consequences of NS- and LS-associated PTPN11 mutations, their structural consequences have not been analyzed fully. Here we report the crystal structures of WT SHP2 and five NS/LS-associated SHP2 mutants. These findings enable direct structural comparisons of the local conformational changes caused by each mutation. Conclusions: Our structural analysis agrees with, and provides additional mechanistic insight into, the previously reported catalytic properties of these mutants. The results of our research provide new information regarding the structure-function relationship of this medically important target, and should serve as a solid foundation for structure-based drug discovery programs.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
Ontario Research and Development Challenge Fund; Canada Research Chairs Program; Ontario Ministry of Health and Long Term Care; The Princess Margaret Cancer Foundation; USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1626548
Journal Information:
BMC Structural Biology (Online), Vol. 14, Issue 1; ISSN 1472-6807
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English

References (45)

Diverse Biochemical Properties of Shp2 Mutants: IMPLICATIONS FOR DISEASE PHENOTYPES journal June 2005
Identification of a human src homology 2-containing protein-tyrosine-phosphatase: a putative homolog of Drosophila corkscrew. journal December 1992
Role of ERK1/2 signaling in congenital valve malformations in Noonan syndrome journal November 2008
PTPN11 mutations in LEOPARD syndrome journal August 2002
Mouse model of Noonan syndrome reveals cell type– and gene dosage–dependent effects of Ptpn11 mutation journal July 2004
Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair journal August 2009
Gain-of-function SOS1 mutations cause a distinctive form of Noonan syndrome journal December 2006
PTPN11 (Shp2) Mutations in LEOPARD Syndrome Have Dominant Negative, Not Activating, Effects journal March 2006
Mutations in PTPN11, encoding the protein tyrosine phosphatase SHP-2, cause Noonan syndrome journal November 2001
SHP-2 and myeloid malignancies journal January 2004
Reduced phosphatase activity of SHP-2 in LEOPARD syndrome: Consequences for PI3K binding on Gab1 journal April 2006
Germline gain-of-function mutations in SOS1 cause Noonan syndrome journal December 2006
Functional analysis of PTPN11/SHP-2 mutants identified in Noonan syndrome and childhood leukemia journal April 2005
MEK-ERK pathway modulation ameliorates disease phenotypes in a mouse model of Noonan syndrome associated with the Raf1L613V mutation journal March 2011
Shp-2 Tyrosine Phosphatase: Signaling One Cell or Many journal November 1999
PTPN11-Associated Mutations in the Heart: Has LEOPARD Changed Its RASpots? journal May 2011
Integration, scaling, space-group assignment and post-refinement journal January 2010
A restricted spectrum of NRAS mutations causes Noonan syndrome journal December 2009
Spatial constraints on the recognition of phosphoproteins by the tandem SH2 domains of the phosphatase SH-PTP2 journal January 1996
The tyrosine phosphatase Shp2 (PTPN11) in cancer journal February 2008
Mutations in PTPN11 implicate the SHP-2 phosphatase in leukemogenesis journal March 2004
Enabling IMAC purification of low abundance recombinant proteins from E. coli lysates journal July 2009
Revealing mechanisms for SH2 domain mediated regulation of the protein tyrosine phosphatase SHP-2 journal March 1998
Noonan syndrome-associated SHP2/PTPN11 mutants cause EGF-dependent prolonged GAB1 binding and sustained ERK2/MAPK1 activation journal January 2004
Diversity and Functional Consequences of Germline and Somatic PTPN11 Mutations in Human Disease journal February 2006
Germ-line and somatic PTPN11 mutations in human disease journal April 2005
Grouping of Multiple-Lentigines/LEOPARD and Noonan Syndromes on the PTPN11 Gene journal August 2002
Features and development of Coot journal March 2010
Acute Myelomonocytic Leukemia in a Boy With LEOPARD Syndrome (PTPN11 Gene Mutation Positive) journal January 2006
NOONAN SYNDROME AND RELATED DISORDERS: Genetics and Pathogenesis journal September 2005
Germline KRAS mutations cause Noonan syndrome journal February 2006
High incidence of malformation syndromes in a series of 1,073 children with cancer journal January 2005
Occurrence of myeloproliferative disorder in patients with Noonan syndrome journal June 1997
The Leopard (Multiple Lentigines) Syndrome Revisited journal January 1971
Gain-of-function RAF1 mutations cause Noonan and LEOPARD syndromes with hypertrophic cardiomyopathy journal July 2007
Germline gain-of-function mutations in RAF1 cause Noonan syndrome journal July 2007
Crystal Structure of the Tyrosine Phosphatase SHP-2 journal February 1998
PTP1B: From the sidelines to the front lines! journal June 2003
Combinatorial control of the specificity of protein tyrosine phosphatases journal April 2001
The ‘Shp'ing news: SH2 domain-containing tyrosine phosphatases in cell signaling journal June 2003
Structural and Mechanistic Insights into LEOPARD Syndrome-Associated SHP2 Mutations journal March 2013
Functional Effects of PTPN11 (SHP2) Mutations Causing LEOPARD Syndrome on Epidermal Growth Factor-Induced Phosphoinositide 3-Kinase/AKT/Glycogen Synthase Kinase 3β Signaling journal March 2010
Structural Determinants of SHP-2 Function and Specificity in Xenopus Mesoderm Induction journal January 1998
Noonan Syndrome Mutation Q79R in Shp2 Increases Proliferation of Valve Primordia Mesenchymal Cells via Extracellular Signal–Regulated Kinase 1/2 Signaling journal October 2005
Rapamycin reverses hypertrophic cardiomyopathy in a mouse model of LEOPARD syndrome–associated PTPN11 mutation journal March 2011

Cited By (6)

Molecular and clinical studies in 107 Noonan syndrome affected individuals with PTPN11 mutations journal March 2020
Mechanism of activating mutations and allosteric drug inhibition of the phosphatase SHP2 journal October 2018
Low-dose dasatinib rescues cardiac function in Noonan syndrome journal December 2016
The RASopathy Family: Consequences of Germline Activation of the RAS/MAPK Pathway journal June 2018
Exploring the effect of N308D mutation on protein tyrosine phosphatase‐2 cause gain‐of‐function activity by a molecular dynamics study journal October 2018
Developmental SHP2 dysfunction underlies cardiac hypertrophy in Noonan syndrome with multiple lentigines journal June 2016