The National Microbiome Data Collaborative: enabling microbiome science

Wood-Charlson, Elisha M.; Anubhav,; Auberry, Deanna; Blanco, Hannah; Borkum, Mark I.; Corilo, Yuri E.; Davenport, Karen W.; Deshpande, Shweta; Devarakonda, Ranjeet; Drake, Meghan; Duncan, William D.; Flynn, Mark C.; Hays, David; Hu, Bin; Huntemann, Marcel; Li, Po-E; Lipton, Mary; Lo, Chien-Chi; Millard, David; Miller, Kayd; Piehowski, Paul D.; Purvine, Samuel; Reddy, T. B. K.; Shakya, Migun; Sundaramurthi, Jagadish Chandrabose; Vangay, Pajau; Wei, Yaxing; Wilson, Bruce E.; Canon, Shane; Chain, Patrick S.  G.; Fagnan, Kjiersten; Martin, Stanton; McCue, Lee Ann; Mungall, Christopher J.; Mouncey, Nigel J.; Maxon, Mary E.; Eloe-Fadrosh, Emiley A.

doi:10.1038/s41579-020-0377-0

Title: The National Microbiome Data Collaborative: enabling microbiome science

Journal Article · Wed Apr 29 00:00:00 EDT 2020 · Nature Reviews Microbiology

DOI:https://doi.org/10.1038/s41579-020-0377-0· OSTI ID:1617787

^[1]; Anubhav, ^[2]; Auberry, Deanna ^[2]; Blanco, Hannah ^[3]; Borkum, Mark I. ^[2]; Corilo, Yuri E. ^[2];

^[4]; Deshpande, Shweta ^[1];

^[3]; Drake, Meghan ^[3];

^[1]; Flynn, Mark C. ^[4]; Hays, David ^[1];

^[4]; Huntemann, Marcel ^[1]; Li, Po-E ^[4]; Lipton, Mary ^[2]; Lo, Chien-Chi ^[4]; Millard, David ^[2];

^[1] more »

Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

To harness the potential of microbiome science across the broad range of relevant disciplines, new approaches to data infrastructure and transdisciplinary collaboration are necessary. The National Microbiome Data Collaborative (NMDC) is a new initiative to support microbiome data exploration and discovery through a collaborative, integrative data science ecosystem.

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Research Organization:: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC05-00OR22725; AC02-05CH11231

OSTI ID:: 1617787

Alternate ID(s):: OSTI ID: 1633281

Journal Information:: Nature Reviews Microbiology, Vol. 18, Issue 6; ISSN 1740-1526

Publisher:: Springer NatureCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 19 works

Citation information provided by
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References (8)

A unified initiative to harness Earth's microbiomes Alivisatos, A. P.; Blaser, M. J.; Brodie, E. L. Science, Vol. 350, Issue 6260 https://doi.org/10.1126/science.aac8480	journal	October 2015
Brazilian Microbiome Project: Revealing the Unexplored Microbial Diversity—Challenges and Prospects Pylro, Victor Satler; Roesch, Luiz Fernando Wurdig; Ortega, José Miguel Microbial Ecology, Vol. 67, Issue 2 https://doi.org/10.1007/s00248-013-0302-4	journal	October 2013
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications Yilmaz, Pelin; Kottmann, Renzo; Field, Dawn Nature Biotechnology, Vol. 29, Issue 5 https://doi.org/10.1038/nbt.1823	journal	May 2011
The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation Buttigieg, Pier Luigi; Pafilis, Evangelos; Lewis, Suzanna E. Journal of Biomedical Semantics, Vol. 7, Issue 1 https://doi.org/10.1186/s13326-016-0097-6	journal	September 2016
An assessment of US microbiome research Stulberg, Elizabeth; Fravel, Deborah; Proctor, Lita M. Nature Microbiology, Vol. 1, Issue 1 https://doi.org/10.1038/nmicrobiol.2015.15	journal	January 2016
Genomes OnLine database (GOLD) v.7: updates and new features Mukherjee, Supratim; Stamatis, Dimitri; Bertsch, Jon Nucleic Acids Research, Vol. 47, Issue D1 https://doi.org/10.1093/nar/gky977	journal	October 2018
Microbiology: Create a global microbiome effort Dubilier, Nicole; McFall-Ngai, Margaret; Zhao, Liping Nature, Vol. 526, Issue 7575 https://doi.org/10.1038/526631a	journal	October 2015
The FAIR Guiding Principles for scientific data management and stewardship Wilkinson, Mark D.; Dumontier, Michel; Aalbersberg, IJsbrand Jan Scientific Data, Vol. 3, Issue 1 https://doi.org/10.1038/sdata.2016.18	journal	March 2016

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