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Title: Crystal structure of human mitochondrial trifunctional protein, a fatty acid β-oxidation metabolon

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
 [1];  [1];  [2]; ORCiD logo [1]
  1. Medical College of Wisconsin, Milwaukee, WI (United States)
  2. Hauptman-Woodward Medical Research Inst., Argonne, IL (United States). Industrial Macromolecular Crystallography Association-Collaborative Access Team

Membrane-bound mitochondrial trifunctional protein (TFP) catalyzes β-oxidation of long chain fatty acyl-CoAs, employing 2-enoyl-CoA hydratase (ECH), 3-hydroxyl-CoA dehydrogenase (HAD), and 3-ketothiolase (KT) activities consecutively. Inherited deficiency of TFP is a recessive genetic disease, manifesting in hypoketotic hypoglycemia, cardiomyopathy, and sudden death. In this work we have determined the crystal structure of human TFP at 3.6-Å resolution. The biological unit of the protein is α2β2. The overall structure of the heterotetramer is the same as that observed by cryo-EM methods. The two β-subunits make a tightly bound homodimer at the center, and two α-subunits are bound to each side of the β2dimer, creating an arc, which binds on its concave side to the mitochondrial innermembrane. The catalytic residues in all three active sites are arranged similarly to those of the corresponding, soluble monofunctional enzymes. A structure-based, substrate channeling pathway from the ECH active site to the HAD and KT sites is proposed. The passage from the ECH site to the HAD site is similar to those found in the two bacterial TFPs. However, the passage from the HAD site to the KT site is unique in that the acyl-CoA intermediate can be transferred between the two sites by passing along the mitochondrial inner membrane using the hydrophobic nature of the acyl chain. The 3'-AMP-PPi moiety is guided by the positively charged residues located along the “ceiling” of the channel, suggesting that membrane integrity is an essential part of the channel and is required for the activity of the enzyme.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
Industrial Macromolecular Crystallography Association; USDOE Office of Science (SC); National Institutes of Health (NIH)
Grant/Contract Number:
AC02-06CH11357; GM29076
OSTI ID:
1506535
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Vol. 116, Issue 13; ISSN 0027-8424
Publisher:
National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
ENGLISH
Citation Metrics:
Cited by: 35 works
Citation information provided by
Web of Science

References (27)

Heterolytic Reduction of Fatty Acid Hydroperoxides by Cytochrome c /Cardiolipin Complexes: Antioxidant Function in Mitochondria journal August 2009
β-Oxidation of fatty acids in mitochondria, peroxisomes, and bacteria: A century of continued progress journal December 1995
Ligand-Induced Domain Rearrangement of Fatty Acid β-Oxidation Multienzyme Complex journal February 2006
Reversible Compartmentalization of de Novo Purine Biosynthetic Complexes in Living Cells journal April 2008
PARP1 exhibits enhanced association and catalytic efficiency with γH2A.X-nucleosome journal December 2019
Features and development of Coot journal March 2010
Human Trifunctional Protein Alpha Links Cardiolipin Remodeling to Beta-Oxidation journal November 2012
Structural and Functional Characterization of the Recombinant Human Mitochondrial Trifunctional Protein journal October 2010
Analysis of the Structure, Substrate Specificity, and Mechanism of Squash Glycerol-3-Phosphate (1)-Acyltransferase journal May 2001
Lipids of mitochondria journal October 2013
Observations regarding retinopathy in mitochondrial trifunctional protein deficiencies journal May 2012
Crystal Structure of Liganded Rat Peroxisomal Multifunctional Enzyme Type 1: A FLEXIBLE MOLECULE WITH TWO INTERCONNECTED ACTIVE SITES journal May 2010
General Mitochondrial Trifunctional Protein (TFP) Deficiency as a Result of Either α- or β-Subunit Mutations Exhibits Similar Phenotypes Because Mutations in Either Subunit Alter TFP Complex Expression and Subunit Turnover journal February 2004
Dependence of Micelle Size and Shape on Detergent Alkyl Chain Length and Head Group journal May 2013
Intermediate Channeling on the Trifunctional β-Oxidation Complex from Pig Heart Mitochondria journal July 1996
Complexes of Sequential Metabolic Enzymes journal June 1987
Structure of Mycobacterial β-Oxidation Trifunctional Enzyme Reveals Its Altered Assembly and Putative Substrate Channeling Pathway journal March 2013
Liver Disease in Pregnancy and Fetal Fatty Acid Oxidation Defects journal September 2000
The mitochondrial trifunctional protein: centre of a β-oxidation metabolon? journal February 2000
Structural basis for channelling mechanism of a fatty acid β-oxidation multienzyme complex journal July 2004
Glutamate 170 of Human l-3-Hydroxyacyl-CoA Dehydrogenase Is Required for Proper Orientation of the Catalytic Histidine and Structural Integrity of the Enzyme journal July 2001
Cryo-EM structure of human mitochondrial trifunctional protein journal June 2018
Common missense mutation G1528C in long-chain 3-hydroxyacyl-CoA dehydrogenase deficiency. Characterization and expression of the mutant protein, mutation analysis on genomic DNA and chromosomal localization of the mitochondrial trifunctional protein alpha subunit gene. journal August 1996
On the role of organized multienzyme systems in cellular metabolism: A general synthesis journal January 1978
Phaser crystallographic software journal July 2007
Novel fatty acid beta-oxidation enzymes in rat liver mitochondria. II. Purification and properties of enoyl-coenzyme A (CoA) hydratase/3-hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase trifunctional protein. journal January 1992
Crystal Structure of Human Mitochondrial Trifunctional Protein text January 2018

Cited By (4)

TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes journal October 2019
Complementary substrate specificity and distinct quaternary assembly of the Escherichia coli aerobic and anaerobic β-oxidation trifunctional enzyme complexes journal July 2019
Author Correction: TFPa/HADHA is required for fatty acid beta-oxidation and cardiolipin re-modeling in human cardiomyocytes journal May 2020
Mitochondrial fatty acid oxidation and the electron transport chain comprise a multifunctional mitochondrial protein complex journal June 2019