Pore-scale water dynamics during drying and the impacts of structure and surface wettability

Cruz, Brian C.; Furrer, Jessica M.; Guo, Yi-Syuan; Dougherty, Daniel; Hinestroza, Hector F.; Hernandez, Jhoan S.; Gage, Daniel J.; Cho, Yong Ku; Shor, Leslie M.

doi:10.1002/2016WR019862

Title: Pore-scale water dynamics during drying and the impacts of structure and surface wettability

Journal Article · Wed Jun 14 00:00:00 EDT 2017 · Water Resources Research

DOI:https://doi.org/10.1002/2016WR019862· OSTI ID:1474400

^[1]; Furrer, Jessica M. ^[2]; Guo, Yi-Syuan ^[3]; Dougherty, Daniel ^[3]; Hinestroza, Hector F. ^[2]; Hernandez, Jhoan S. ^[2]; Gage, Daniel J. ^[4]; Cho, Yong Ku ^[3];

^[5]

Univ. of Connecticut, Storrs, CT (United States). Dept. of Civil and Environmental Engineering
Benedict College, Columbia SC (United States). Dept. of Physics and Engineering
Univ. of Connecticut, Storrs, CT (United States). Dept. of Chemical and Biomolecular Engineering
Univ. of Connecticut, Storrs, CT (United States). Dept. of Molecular and Cell Biology
Univ. of Connecticut, Storrs, CT (United States). Dept. of Chemical and Biomolecular Engineering, and Center for Environmental Sciences and Engineering

Plants and microbes secrete mucilage into soil during dry conditions, which can alter soil structure and increase contact angle. Structured soils exhibit a broad pore size distribution with many small and many large pores, and strong capillary forces in narrow pores can retain moisture in soil aggregates. Meanwhile, contact angle determines the water repellency of soils, which can result in suppressed evaporation rates. Although they are often studied independently, both structure and contact angle influence water movement, distribution, and retention in soils. Here, drying experiments were conducted using soil micromodels patterned to emulate different aggregation states of a sandy loam soil. Micromodels were treated to exhibit contact angles representative of those in bulk soil (8.4 ° ± 1.9 °) and the rhizosphere (65 ° ± 9.2 °). Drying was simulated using a lattice Boltzmann single component, multi-phase model. In our experiments, micromodels with higher contact angle surfaces took four times longer to completely dry versus micromodels with lower contact angle surfaces. Microstructure influenced drying rate as a function of saturation and controlled the spatial distribution of moisture within micromodels. Lattice Boltzmann simulations accurately predicted pore scale moisture retention patterns within micromodels with different structures and contact angles.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Univ. of Connecticut, Storrs, CT (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: SC0014522; 2012-67020-19380

OSTI ID:: 1474400

Alternate ID(s):: OSTI ID: 1375527; OSTI ID: 1595556

Report Number(s):: DOE-UCONN-14522-3

Journal Information:: Water Resources Research, Vol. 53, Issue 7; ISSN 0043-1397

Publisher:: American Geophysical Union (AGU)Copyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 15 works

Citation information provided by
Web of Science

References (64)

Theory of the lattice Boltzmann method: Lattice Boltzmann models for nonideal gases Luo, Li-Shi Physical Review E, Vol. 62, Issue 4 https://doi.org/10.1103/PhysRevE.62.4982	journal	October 2000
Simulation of nonideal gases and liquid-gas phase transitions by the lattice Boltzmann equation Shan, Xiaowen; Chen, Hudong Physical Review E, Vol. 49, Issue 4 https://doi.org/10.1103/PhysRevE.49.2941	journal	April 1994
Dynamics of soil water content in the rhizosphere Carminati, Andrea; Moradi, Ahmad B.; Vetterlein, Doris Plant and Soil, Vol. 332, Issue 1-2 https://doi.org/10.1007/s11104-010-0283-8	journal	January 2010
Rhizosphere wettability decreases with root age: a problem or a strategy to increase water uptake of young roots? Carminati, Andrea Frontiers in Plant Science, Vol. 4 https://doi.org/10.3389/fpls.2013.00298	journal	January 2013
Water percolation through the root-soil interface Benard, Pascal; Kroener, Eva; Vontobel, Peter Advances in Water Resources, Vol. 95 https://doi.org/10.1016/j.advwatres.2015.09.014	journal	September 2016
Drying of mucilage causes water repellency in the rhizosphere of maize: measurements and modelling Ahmed, Mutez Ali; Kroener, Eva; Benard, Pascal Plant and Soil, Vol. 407, Issue 1-2 https://doi.org/10.1007/s11104-015-2749-1	journal	November 2015
Prediction of capillary hysteresis in a porous material using lattice-Boltzmann methods and comparison to experimental data and a morphological pore network model Ahrenholz, B.; Tölke, J.; Lehmann, P. Advances in Water Resources, Vol. 31, Issue 9 https://doi.org/10.1016/j.advwatres.2008.03.009	journal	September 2008
Quantification of Bacterial Chemotaxis in Porous Media Using Magnetic Resonance Imaging Olson, Mira Stone; Ford, Roseanne M.; Smith, James A. Environmental Science & Technology, Vol. 38, Issue 14 https://doi.org/10.1021/es035236s	journal	July 2004
Drying with Formation of Capillary Rings in a Model Porous Medium Vorhauer, N.; Wang, Y. J.; Kharaghani, A. Transport in Porous Media, Vol. 110, Issue 2 https://doi.org/10.1007/s11242-015-0538-1	journal	July 2015
Hysteresis and interfacial energies in smooth-walled microfluidic channels: HYSTERESIS AND INTERFACIAL ENERGIES Liu, Yihong; Nolte, D. D.; Pyrak-Nolte, L. J. Water Resources Research, Vol. 47, Issue 1 https://doi.org/10.1029/2010WR009541	journal	January 2011
What determines drying rates at the onset of diffusion controlled stage-2 evaporation from porous media?: DRYING RATE AT THE ONSET OF STAGE-2 EVAPORATION Shokri, N.; Or, D. Water Resources Research, Vol. 47, Issue 9 https://doi.org/10.1029/2010WR010284	journal	September 2011
Synergistic effects of soil microstructure and bacterial EPS on drying rate in emulated soil micromodels Deng, Jinzi; Orner, Erika P.; Chau, Jessica Furrer Soil Biology and Biochemistry, Vol. 83 https://doi.org/10.1016/j.soilbio.2014.12.006	journal	April 2015
A snake-based approach to accurate determination of both contact points and contact angles Stalder, A. F.; Kulik, G.; Sage, D. Colloids and Surfaces A: Physicochemical and Engineering Aspects, Vol. 286, Issue 1-3 https://doi.org/10.1016/j.colsurfa.2006.03.008	journal	September 2006
Window on a Microworld: Simple Microfluidic Systems for Studying Microbial Transport in Porous Media Markov, Dmitry A.; Samson, Philip C.; Schaffer, David K. Journal of Visualized Experiments, Issue 39 https://doi.org/10.3791/1741	journal	January 2010
Interfacial jumps and pressure bursts during fluid displacement in interacting irregular capillaries Moebius, Franziska; Or, Dani Journal of Colloid and Interface Science, Vol. 377, Issue 1 https://doi.org/10.1016/j.jcis.2012.03.070	journal	July 2012
Distribution of multiphase fluids in porous media: Comparison between lattice Boltzmann modeling and micro-x-ray tomography Sukop, Michael C.; Huang, Haibo; Lin, Chen Luh Physical Review E, Vol. 77, Issue 2 https://doi.org/10.1103/PhysRevE.77.026710	journal	February 2008
Pore-scale simulation of mixing-induced calcium carbonate precipitation and dissolution in a microfluidic pore network: PORE-SCALE SIMULATION IN A MICROMODEL Yoon, Hongkyu; Valocchi, Albert J.; Werth, Charles J. Water Resources Research, Vol. 48, Issue 2 https://doi.org/10.1029/2011WR011192	journal	February 2012
Simulation of gaseous diffusion in partially saturated porous media under variable gravity with lattice Boltzmann methods: GASEOUS DIFFUSION UNDER VARIABLE GRAVITY Chau, Jessica Furrer; Or, Dani; Sukop, Michael C. Water Resources Research, Vol. 41, Issue 8 https://doi.org/10.1029/2004WR003821	journal	August 2005
Advances in Soil Evaporation Physics—A Review Or, Dani; Lehmann, Peter; Shahraeeni, Ebrahim Vadose Zone Journal, Vol. 12, Issue 4 https://doi.org/10.2136/vzj2012.0163	journal	January 2013
Investigations on the influence of pore-space geometry on concentration patterns and transportation properties of dissolved oxygen in a bioactive sandy sediment by a lattice Boltzmann automaton model: PORE-SPACE GEOMETRY AND DISSOLVED OXYGEN Haußels, R.; Klenke, Th.; Kropp, J. Hydrological Processes, Vol. 15, Issue 1 https://doi.org/10.1002/hyp.117	journal	January 2001
Characteristics of evaporation from partially wettable porous media: EVAPORATION FROM WETTABLE POROUS MEDIA Shokri, N.; Lehmann, P.; Or, D. Water Resources Research, Vol. 45, Issue 2 https://doi.org/10.1029/2008WR007185	journal	February 2009
On the fabrication of PDMS micromodels by rapid prototyping, and their use in two-phase flow studies: MICROMODEL, TWO-PHASE FLOW EXPERIMENTS Karadimitriou, N. K.; Musterd, M.; Kleingeld, P. J. Water Resources Research, Vol. 49, Issue 4 https://doi.org/10.1002/wrcr.20196	journal	April 2013
Effects of hydrophobic layers on evaporation from porous media Shokri, N.; Lehmann, P.; Or, D. Geophysical Research Letters, Vol. 35, Issue 19 https://doi.org/10.1029/2008GL035230	journal	January 2008
Effect of root mucilage and modelled root exudates on soil structure Traore, O.; Groleau-Renaud, V.; Plantureux, S. European Journal of Soil Science, Vol. 51, Issue 4 https://doi.org/10.1046/j.1365-2389.2000.00348.x	journal	December 2000
An adaptive lattice Boltzmann scheme for modeling two-fluid-phase flow in porous medium systems: ADAPTIVE LATTICE BOLTZMANN SCHEME Dye, Amanda L.; McClure, James E.; Adalsteinsson, David Water Resources Research, Vol. 52, Issue 4 https://doi.org/10.1002/2015WR018279	journal	April 2016
Physical constraints affecting bacterial habitats and activity in unsaturated porous media – a review Or, D.; Smets, B. F.; Wraith, J. M. Advances in Water Resources, Vol. 30, Issue 6-7 https://doi.org/10.1016/j.advwatres.2006.05.025	journal	June 2007
Surface Engineering of Poly(dimethylsiloxane) Microfluidic Devices Using Transition Metal Sol−Gel Chemistry Roman, Gregory T.; Culbertson, Christopher T. Langmuir, Vol. 22, Issue 9 https://doi.org/10.1021/la053085w	journal	April 2006
Is the Rhizosphere Temporarily Water Repellent? Moradi, Ahmad B.; Carminati, Andrea; Lamparter, Axel Vadose Zone Journal, Vol. 11, Issue 3 https://doi.org/10.2136/vzj2011.0120	journal	January 2012
Root- and microbial-derived mucilages affect soil structure and water transport Czarnes, S.; Hallett, P. D.; Bengough, A. G. European Journal of Soil Science, Vol. 51, Issue 3 https://doi.org/10.1046/j.1365-2389.2000.00327.x	journal	September 2000
Relating capillary pressure to interfacial areas: CAPILLARY PRESSURE AND INTERFACIAL AREAS Pyrak-Nolte, Laura J.; Nolte, David D.; Chen, Daiquan Water Resources Research, Vol. 44, Issue 6 https://doi.org/10.1029/2007WR006434	journal	June 2008
The impact of mucilage on root water uptake—A numerical study Schwartz, N.; Carminati, A.; Javaux, M. Water Resources Research, Vol. 52, Issue 1 https://doi.org/10.1002/2015WR018150	journal	January 2016
Micromodel study of two-phase flow under transient conditions: Quantifying effects of specific interfacial area Karadimitriou, N. K.; Hassanizadeh, S. M.; Joekar-Niasar, V. Water Resources Research, Vol. 50, Issue 10 https://doi.org/10.1002/2014WR015388	journal	October 2014
Influence of wettability conditions on slow evaporation in two-dimensional porous media Chapuis, O.; Prat, M. Physical Review E, Vol. 75, Issue 4 https://doi.org/10.1103/PhysRevE.75.046311	journal	April 2007
Modeling the velocity field during Haines jumps in porous media Armstrong, Ryan T.; Evseev, Nikolay; Koroteev, Dmitry Advances in Water Resources, Vol. 77 https://doi.org/10.1016/j.advwatres.2015.01.008	journal	March 2015
Critical evaluation of enhancement factors for vapor transport through unsaturated porous media: VAPOR TRANSPORT THROUGH UNSATURATED POROUS MEDIA Shokri, N.; Lehmann, P.; Or, D. Water Resources Research, Vol. 45, Issue 10 https://doi.org/10.1029/2009WR007769	journal	October 2009
Lattice Boltzmann modeling of contact angle and its hysteresis in two-phase flow with large viscosity difference Liu, Haihu; Ju, Yaping; Wang, Ningning Physical Review E, Vol. 92, Issue 3 https://doi.org/10.1103/PhysRevE.92.033306	journal	September 2015
Tape underlayment rotary-node (TURN) valves for simple on-chip microfluidic flow control Markov, Dmitry A.; Manuel, Steven; Shor, Leslie M. Biomedical Microdevices, Vol. 12, Issue 1 https://doi.org/10.1007/s10544-009-9368-7	journal	October 2009
Invasion percolation of single component, multiphase fluids with lattice Boltzmann models Sukop, Michael C.; Or, Dani Physica B: Condensed Matter, Vol. 338, Issue 1-4 https://doi.org/10.1016/j.physb.2003.08.009	journal	October 2003
Water for Carbon, Carbon for Water Carminati, Andrea; Kroener, Eva; Ahmed, Mutez A. Vadose Zone Journal, Vol. 15, Issue 2 https://doi.org/10.2136/vzj2015.04.0060	journal	January 2016
Isothermal and Nonisothermal Evaporation from Four Sandy Soils of Different Water Repellency Bachmann, J.; Horton, R.; van der Ploeg, R. R. Soil Science Society of America Journal, Vol. 65, Issue 6 https://doi.org/10.2136/sssaj2001.1599	journal	January 2001
On the influence of pore shape, contact angle and film flows on drying of capillary porous media Prat, M. International Journal of Heat and Mass Transfer, Vol. 50, Issue 7-8 https://doi.org/10.1016/j.ijheatmasstransfer.2006.09.001	journal	April 2007
Transverse Mixing Enhancement due to Bacterial Random Motility in Porous Microfluidic Devices Singh, Rajveer; Olson, Mira Stone Environmental Science & Technology, Vol. 45, Issue 20 https://doi.org/10.1021/es201706w	journal	October 2011
Three-dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image-based modeling Tracy, Saoirse R.; Daly, Keith R.; Sturrock, Craig J. Water Resources Research, Vol. 51, Issue 2 https://doi.org/10.1002/2014WR016020	journal	February 2015
Small-scale contact angle mapping on undisturbed soil surfaces Bachmann, Joerg; Goebel, Marc-O.; Woche, Susanne K. Journal of Hydrology and Hydromechanics, Vol. 61, Issue 1 https://doi.org/10.2478/johh-2013-0002	journal	March 2013
Lattice Boltzmann method for modeling liquid-vapor interface configurations in porous media: LATTICE BOLTZMANN FOR INTERFACE CONFIGURATIONS Sukop, Michael C.; Or, Dani Water Resources Research, Vol. 40, Issue 1 https://doi.org/10.1029/2003WR002333	journal	January 2004
Dynamic Dosing Assay Relating Real-Time Respiration Responses of Staphylococcus aureus Biofilms to Changing Microchemical Conditions Deng, Jinzi; Dhummakupt, Adit; Samson, Philip C. Analytical Chemistry, Vol. 85, Issue 11 https://doi.org/10.1021/ac303711m	journal	May 2013
Soil-on-a-Chip: microfluidic platforms for environmental organismal studies Stanley, Claire E.; Grossmann, Guido; Casadevall i. Solvas, Xavier Lab on a Chip, Vol. 16, Issue 2 https://doi.org/10.1039/C5LC01285F	journal	January 2016
An improved pore-scale biofilm model and comparison with a microfluidic flow cell experiment: A PORE-SCALE BIOFILM MODEL AND COMPARISON WITH AN EXPERIMENT Tang, Youneng; Valocchi, Albert J.; Werth, Charles J. Water Resources Research, Vol. 49, Issue 12 https://doi.org/10.1002/2013WR013843	journal	December 2013
Drying patterns of porous media containing wettability contrasts Shokri, N.; Or, D. Journal of Colloid and Interface Science, Vol. 391 https://doi.org/10.1016/j.jcis.2012.08.074	journal	February 2013
Pore-scale modeling of water-phase fragmentation in simulated soils with realistic pore geometry Furrer, Jessica M.; Bagtzoglou, Amvrossios C. Granular Matter, Vol. 19, Issue 2 https://doi.org/10.1007/s10035-017-0701-1	journal	February 2017
Relative permeability of homogenous-wet and mixed-wet porous media as determined by pore-scale lattice Boltzmann modeling Landry, C. J.; Karpyn, Z. T.; Ayala, O. Water Resources Research, Vol. 50, Issue 5 https://doi.org/10.1002/2013WR015148	journal	May 2014
Effect of wetting properties on the kinetics of drying of porous media Shahidzadeh-Bonn, N.; Azouni, A.; Coussot, P. Journal of Physics: Condensed Matter, Vol. 19, Issue 11 https://doi.org/10.1088/0953-8984/19/11/112101	journal	February 2007
On the dynamics and kinematics of two‐fluid‐phase flow in porous media Gray, W. G.; Dye, A. L.; McClure, J. E. Water Resources Research, Vol. 51, Issue 7 https://doi.org/10.1002/2015WR016921	journal	July 2015
Simulation of multicomponent fluids in complex three-dimensional geometries by the lattice Boltzmann method Martys, Nicos S.; Chen, Hudong Physical Review E, Vol. 53, Issue 1 https://doi.org/10.1103/PhysRevE.53.743	journal	January 1996
Fiji: an open-source platform for biological-image analysis Schindelin, Johannes; Arganda-Carreras, Ignacio; Frise, Erwin Nature Methods, Vol. 9, Issue 7 https://doi.org/10.1038/nmeth.2019	journal	June 2012
Protist-Facilitated Particle Transport Using Emulated Soil Micromodels Rubinstein, Rebecca L.; Kadilak, Andrea L.; Cousens, Virginia C. Environmental Science & Technology, Vol. 49, Issue 3 https://doi.org/10.1021/es503424z	journal	January 2015
Lattice BGK Models for Navier-Stokes Equation Qian, Y. H.; D'Humières, D.; Lallemand, P. Europhysics Letters (EPL), Vol. 17, Issue 6 https://doi.org/10.1209/0295-5075/17/6/001	journal	February 1992
On pressure and velocity boundary conditions for the lattice Boltzmann BGK model Zou, Qisu; He, Xiaoyi Physics of Fluids, Vol. 9, Issue 6 https://doi.org/10.1063/1.869307	journal	June 1997
Stochastic modeling of the permeability of randomly generated porous media Li, Yusong; LeBoeuf, Eugene J.; Basu, P. K. Advances in Water Resources, Vol. 28, Issue 8 https://doi.org/10.1016/j.advwatres.2005.01.007	journal	August 2005
Lattice Boltzmann equation model for multi-component multi-phase flow with high density ratios Bao, Jie; Schaefer, Laura Applied Mathematical Modelling, Vol. 37, Issue 4 https://doi.org/10.1016/j.apm.2012.04.048	journal	February 2013
Linking drainage front morphology with gaseous diffusion in unsaturated porous media: A lattice Boltzmann study Chau, Jessica Furrer; Or, Dani Physical Review E, Vol. 74, Issue 5 https://doi.org/10.1103/PhysRevE.74.056304	journal	November 2006
A Simplified Implementation of the Bubble Analysis of Biopolymer Network Pores Münster, Stefan; Fabry, Ben Biophysical Journal, Vol. 104, Issue 12 https://doi.org/10.1016/j.bpj.2013.05.016	journal	June 2013
Lattice-Boltzmann Method for Complex Flows Aidun, Cyrus K.; Clausen, Jonathan R. Annual Review of Fluid Mechanics, Vol. 42, Issue 1 https://doi.org/10.1146/annurev-fluid-121108-145519	journal	January 2010
Drying kinetics driven by the shape of the air/water interface in a capillary channel Keita, Emmanuel; Koehler, Stephan A.; Faure, Paméla The European Physical Journal E, Vol. 39, Issue 2 https://doi.org/10.1140/epje/i2016-16023-8	journal	February 2016

Cited By (1)

Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain Baveye, Philippe C.; Otten, Wilfred; Kravchenko, Alexandra Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.01929	journal	August 2018

Similar Records

Bacterial Extracellular Polymeric Substances Amplify Water Content Variability at the Pore Scale

Journal Article · Wed Sep 19 00:00:00 EDT 2018 · Frontiers in Environmental Science · OSTI ID:1474400

Guo, Yi-Syuan; Furrer, Jessica M.; Kadilak, Andrea L.; +4 more

Pore-Scale Monitoring of the Effect of Microarchitecture on Fungal Growth in a Two-Dimensional Soil-Like Micromodel

Journal Article · Tue Jul 03 00:00:00 EDT 2018 · Frontiers in Environmental Science · OSTI ID:1474400

Soufan, Raghad; Delaunay, Yolaine; Gonod, Laure Vieublé; +4 more

The Influence of Glass Leachate on the Hydraulic, Physical, Mineralogical and Sorptive Properties of Hanford Sediment

Technical Report · Tue Aug 26 00:00:00 EDT 2003 · OSTI ID:1474400

Kaplan, Daniel I; Serne, R Jeffrey; Schaef, Herbert T; +5 more

Related Subjects

42 ENGINEERING
lattice Boltzmann method
unsaturated
contact angle
soil structure
microfluidic
High water repellency micromodels dried 4 times slower than low water repellency micromodels regardless of aggregation A lattice Boltzmann model was developed and accurately reproduces pore-scale moisture distribution during evaporative drying Water film flow and meniscus shape are significant factors in reducing evaporative drying in high water repellency micromodels

Title: Pore-scale water dynamics during drying and the impacts of structure and surface wettability

Citation Formats

References (64)

Cited By (1)

Similar Records

Related Subjects