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Title: Phosphorylation of Ribosomal Protein RPS6 Integrates Light Signals and Circadian Clock Signals

Journal Article · · Frontiers in Plant Science
 [1];  [1];  [1];  [2];  [1];  [1];  [3];  [4];  [5]
  1. Univ. of Tennessee, Knoxville, TN (United States). Dept. of Biochemistry, Cellular and Molecular Biology
  2. Univ. of Tennessee, Knoxville, TN (United States). Graduate School of Genome Science and Technology
  3. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Chemical Sciences Division
  4. Univ. of Tennessee, Knoxville, TN (United States). Graduate School of Genome Science and Technology; Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Chemical Sciences Division
  5. Univ. of Tennessee, Knoxville, TN (United States). Dept. of Biochemistry, Cellular and Molecular Biology. Graduate School of Genome Science and Technology

The translation of mRNA into protein is tightly regulated by the light environment as well as by the circadian clock. Although changes in translational efficiency have been well documented at the level of mRNA-ribosome loading, the underlying mechanisms are unclear. The reversible phosphorylation of RIBOSOMAL PROTEIN OF THE SMALL SUBUNIT 6 (RPS6) has been known for 40 years, but the biochemical significance of this event remains unclear to this day. Here, we confirm using a clock-deficient strain of Arabidopsis thaliana that RPS6 phosphorylation (RPS6-P) is controlled by the diel light-dark cycle with a peak during the day. Strikingly, when wild-type, clock-enabled, seedlings that have been entrained to a light-dark cycle are placed under free-running conditions, the circadian clock drives a cycle of RPS6-P with an opposite phase, peaking during the subjective night. We show that in wild-type seedlings under a light-dark cycle, the incoherent light and clock signals are integrated by the plant to cause an oscillation in RPS6-P with a reduced amplitude with a peak during the day. Sucrose can stimulate RPS6-P, as seen when sucrose in the medium masks the light response of etiolated seedlings. However, the diel cycles of RPS6-P are observed in the presence of 1% sucrose and in its absence. Sucrose at a high concentration of 3% appears to interfere with the robust integration of light and clock signals at the level of RPS6-P. Finally, we addressed whether RPS6-P occurs uniformly in polysomes, non-polysomal ribosomes and their subunits, and non-ribosomal protein. It is the polysomal RPS6 whose phosphorylation is most highly stimulated by light and repressed by darkness. These data exemplify a striking case of contrasting biochemical regulation between clock signals and light signals. Although the physiological significance of RPS6-P remains unknown, our data provide a mechanistic basis for the future understanding of this enigmatic event.

Research Organization:
Univ. of Tennessee, Knoxville, TN (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; National Science Foundation (NSF); Univ. of Tennessee (United States)
Grant/Contract Number:
AC05-00OR22725; IOS-1456988
OSTI ID:
1432165
Journal Information:
Frontiers in Plant Science, Vol. 8; ISSN 1664-462X
Publisher:
Frontiers Research FoundationCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 36 works
Citation information provided by
Web of Science

References (64)

Rhythmic growth explained by coincidence between internal and external cues journal June 2007
The metabolic sensor AKIN10 modulates the Arabidopsis circadian clock in a light-dependent manner : AKIN10 in the clock journal March 2017
The Circadian Clock Modulates Global Daily Cycles of mRNA Ribosome Loading journal September 2015
Translational Landscape of Photomorphogenic Arabidopsis journal October 2013
Ribosomal protein S6 phosphorylation is a determinant of cell size and glucose homeostasis journal September 2005
PHYTOCHROME INTERACTING FACTORS mediate metabolic control of the circadian system in Arabidopsis journal April 2017
Photosynthetic Control of Arabidopsis Leaf Cytoplasmic Translation Initiation by Protein Phosphorylation journal July 2013
Circadian Waves of Expression of the APRR1/TOC1 Family of Pseudo-Response Regulators in Arabidopsis thaliana : Insight into the Plant Circadian Clock journal September 2000
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics journal April 2017
Ribosomal protein S6 kinase activity controls the ribosome biogenesis transcriptional program journal January 2013
The CRAPome: a contaminant repository for affinity purification–mass spectrometry data journal July 2013
Ribosomal Protein S6 Phosphorylation in the Nervous System: From Regulation to Function journal December 2015
Identification of nucleosome assembly protein 1 (NAP1) as an interacting partner of plant ribosomal protein S6 (RPS6) and a positive regulator of rDNA transcription journal September 2015
Overexpression of Arabidopsis Phytochrome B Inhibits Phytochrome A Function in the Presence of Sucrose journal April 1999
Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis journal January 2012
Auxin stimulates S6 ribosomal protein phosphorylation in maize thereby affecting protein synthesis regulation journal June 2002
What makes ribosomes tick? journal November 2017
Photosynthetic entrainment of the Arabidopsis thaliana circadian clock journal October 2013
Light Control of Nuclear Gene mRNA Abundance and Translation in Tobacco journal December 2003
Phosphorylated Ribosomal Protein S6 Is Required for Akt-Driven Hyperplasia and Malignant Transformation, but Not for Hypertrophy, Aneuploidy and Hyperfunction of Pancreatic β-Cells journal February 2016
Heat-shock-induced alterations of ribosomal protein phosphorylation in plant cell cultures journal September 1982
Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search journal October 2002
The circadian oscillator gene GIGANTEA mediates a long-term response of the Arabidopsis thaliana circadian clock to sucrose journal March 2011
Phytohormones Participate in an S6 Kinase Signal Transduction Pathway in Arabidopsis journal April 2004
Circadian control of root elongation and C partitioning in Arabidopsis thaliana : Circadian control of root growth journal March 2011
Dynamic Light Regulation of Translation Status in Arabidopsis thaliana journal January 2012
The Role of Target of Rapamycin Signaling Networks in Plant Growth and Metabolism journal January 2014
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination journal April 2009
PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update journal October 2009
Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis journal January 2009
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition journal October 2016
The APRR1/TOC1 Quintet Implicated in Circadian Rhythms of Arabidopsis thaliana: II. Characterization with CCA1-Overexpressing Plants journal January 2002
Quantitative phosphoproteomics reveals the role of the AMPK plant ortholog SnRK1 as a metabolic master regulator under energy deprivation journal August 2016
Mice Deficient in Ribosomal Protein S6 Phosphorylation Suffer from Muscle Weakness that Reflects a Growth Defect and Energy Deficit journal May 2009
Strengths and Limitations of Period Estimation Methods for Circadian Data journal May 2014
Differential Phosphorylation of Ribosomal Proteins in Arabidopsis thaliana Plants during Day and Night journal December 2011
Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 Causes Circadian Clock Defects journal October 2012
A Statistical Model for Identifying Proteins by Tandem Mass Spectrometry journal September 2003
Aberrant temporal growth pattern and morphology of root and shoot caused by a defective circadian clock in Arabidopsis thaliana journal July 2012
Constitutive Expression of the CIRCADIAN CLOCK ASSOCIATED 1 (CCA1) Gene Disrupts Circadian Rhythms and Suppresses Its Own Expression journal June 1998
Arabidopsis S6 kinase mutants display chromosome instability and altered RBR1–E2F pathway activity journal August 2010
Beyond flexibility: controlling stem cells in an ever changing environment journal February 2017
The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent journal May 2010
Connections between circadian clocks and carbon metabolism reveal species-specific effects on growth control journal April 2014
Regulated Phosphorylation of 40S Ribosomal Protein S6 in Root Tips of Maize journal July 2003
Modular Domain Structure of Arabidopsis COP1. Reconstitution of Activity by Fragment Complementation and Mutational Analysis of a Nuclear Localization Signal in Planta journal November 2000
The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6 journal November 2016
Diurnal Changes of Polysome Loading Track Sucrose Content in the Rosette of Wild-Type Arabidopsis and the Starchless pgm Mutant journal May 2013
Are highly phosphorylated 40-S subunits preferentially utilized during protein synthesis in a cell-free system from HeLa cells? journal March 1987
Sucrose control of phytochrome A signaling in Arabidopsis. journal April 1997
The Diurnal Project: Diurnal and Circadian Expression Profiling, Model-based Pattern Matching, and Promoter Analysis journal January 2007
TOR and S6K1 promote translation reinitiation of uORF-containing mRNAs via phosphorylation of eIF3h journal March 2013
Preferential Utilization of Phosphorylated 40-S Ribosomal Subunits during Initiation Complex Formation journal April 1982
Protein Degradation Rate in Arabidopsis thaliana Leaf Growth and Development journal January 2017
Arabidopsis TARGET OF RAPAMYCIN Interacts with RAPTOR, Which Regulates the Activity of S6 Kinase in Response to Osmotic Stress Signals journal December 2005
PSEUDO-RESPONSE REGULATORS, PRR9, PRR7 and PRR5, Together Play Essential Roles Close to the Circadian Clock of Arabidopsis thaliana journal May 2005
A new system for naming ribosomal proteins journal February 2014
Timeseries used in Zielinski et al. Strengths and Limitations of Period Estimation Methods null January 2019
LHY and CCA1 Are Partially Redundant Genes Required to Maintain Circadian Rhythms in Arabidopsis journal May 2002
A comparison of proteomic, genomic, and osteological methods of archaeological sex estimation journal July 2020
Ribosomal Protein S6, a Target of Rapamycin, Is Involved in the Regulation of rRNA Genes by Possible Epigenetic Changes in Arabidopsis journal December 2013
Quantitative Circadian Phosphoproteomic Analysis of Arabidopsis Reveals Extensive Clock Control of Key Components in Physiological, Metabolic, and Signaling Pathways journal June 2015
TORC1 and TORC2 work together to regulate ribosomal protein S6 phosphorylation in Saccharomyces cerevisiae journal January 2016
Attenuation of ribosomal protein S6 phosphatase activity in chicken embryo fibroblasts transformed by Rous sarcoma virus. journal January 1994

Cited By (7)

The nucleolus, an ally, and an enemy of cancer cells journal August 2018
TOR and RPS6 transmit light signals to enhance protein translation in deetiolating Arabidopsis seedlings journal November 2018
Integration of nutrient, energy, light, and hormone signalling via TOR in plants journal February 2019
Target of Rapamycin kinase: central regulatory hub for plant growth and metabolism journal April 2019
Thermal imaging as a noninvasive technique for analyzing circadian rhythms in plants journal September 2019
Recent advances in understanding regulation of the Arabidopsis circadian clock by local cellular environment journal January 2020
Recent advances in understanding regulation of the Arabidopsis circadian clock by local cellular environment. text January 2020