skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Rickettsia prowazekii methionine aminopeptidase as a promising target for the development of antibacterial agents

Journal Article · · Bioorganic and Medicinal Chemistry
 [1];  [1];  [1];  [2];  [3];  [2];  [4];  [5];  [6];  [5];  [1];  [1]
  1. Northern Illinois Univ., DeKalb, IL (United States). Department of Chemistry and Biochemistry
  2. Beryllium Discovery Corp., Bainbridge Island, WA (United States); Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA (United States)
  3. Center for Infectious Disease Research, Seattle, WA (United States); Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA (United States)
  4. Ernest Orlando Lawrence Berkeley National Laboratory, Berkeley, CA (United States); Molecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology
  5. University of South Alabama College of Medicine, Laboratory of Infectious Diseases, Mobile, AL (United States). Department of Microbiology and Immunology and The Center for Lung Biology
  6. Center for Infectious Disease Research, Seattle, WA (United States); Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA (United States); Univ. of Washington, Seattle, WA (United States). Department of Global Health and Department of Biomedical Informatics and Medical Education

Methionine aminopeptidase (MetAP) is a class of ubiquitous enzymes essential for the survival of numerous bacterial species. These enzymes are responsible for the cleavage of N-terminal formyl-methionine initiators from nascent proteins to initiate post-translational modifications that are often essential to proper protein function. Thus, inhibition of MetAP activity has been implicated as a novel antibacterial target. In this study, we tested this idea in the present study by targeting the MetAP enzyme in the obligate intracellular pathogen Rickettsia prowazekii. We first identified potent RpMetAP inhibitory species by employing an in vitro enzymatic activity assay. The molecular docking program AutoDock was then utilized to compare published crystal structures of inhibited MetAP species to docked poses of RpMetAP. Based on these in silico and in vitro screens, a subset of 17 compounds was tested for inhibition of R. prowazekii growth in a pulmonary vascular endothelial cell (EC) culture infection model system. All compounds were tested over concentration ranges that were determined to be non-toxic to the ECs and 8 of the 17 compounds displayed substantial inhibition of R. prowazekii growth. Lastly, these data highlight the therapeutic potential for inhibiting RpMetAP as a novel antimicrobial strategy and set the stage for future studies in pre-clinical animal models of infection.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1423611
Alternate ID(s):
OSTI ID: 1412590
Journal Information:
Bioorganic and Medicinal Chemistry, Vol. 25, Issue 3; ISSN 0968-0896
Publisher:
ElsevierCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 9 works
Citation information provided by
Web of Science

References (58)

Advances in Bacterial Methionine Aminopeptidase Inhibition journal October 2015
Methionine aminopeptidase gene of Escherichia coli is essential for cell growth. journal January 1989
The Seattle Structural Genomics Center for Infectious Disease (SSGCID) journal October 2009
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility journal December 2009
Overview of the CCP 4 suite and current developments journal March 2011
Identification of the Molecular Basis of Inhibitor Selectivity between the Human and Streptococcal Type I Methionine Aminopeptidases journal February 2015
Metal-mediated inhibition is a viable approach for inhibiting cellular methionine aminopeptidase journal December 2009
Structural analysis of inhibition of E. coli methionine aminopeptidase: implication of loop adaptability in selective inhibition of bacterial enzymes journal January 2007
Inhibition of Monometalated Methionine Aminopeptidase:  Inhibitor Discovery and Crystallographic Analysis journal October 2007
Metalloform-Selective Inhibitors of Escherichia c oli Methionine Aminopeptidase and X-ray Structure of a Mn(II)-Form Enzyme Complexed with an Inhibitor journal November 2004
New Substructure Filters for Removal of Pan Assay Interference Compounds (PAINS) from Screening Libraries and for Their Exclusion in Bioassays journal April 2010
Expression and characterization of Mycobacterium tuberculosis methionine aminopeptidase type 1a journal May 2010
REFMAC 5 dictionary: organization of prior chemical knowledge and guidelines for its use journal November 2004
Feeling Nature’s PAINS: Natural Products, Natural Product Drugs, and Pan Assay Interference Compounds (PAINS) journal October 2015
A cell-based assay that targets methionine aminopeptidase in a physiologically relevant environment journal April 2010
Principles of the Malicious Use of Infectious Agents To Create Terror journal June 2003
Rickettsiae and Rickettsial Infections: The Current State of Knowledge journal July 2007
Characterization of clioquinol and analogues as novel inhibitors of methionine aminopeptidases from Mycobacterium tuberculosis journal December 2011
The realities of biodefense vaccines against Rickettsia journal November 2009
Isolation of Rickettsia prowazekii from Blood by Shell Vial Cell Culture journal January 1999
Hydroxamic Acids as Potent Inhibitors of Fe II and Mn II E. coli Methionine Aminopeptidase: Biological Activities and X-ray Structures of Oxazole Hydroxamate- Ec MetAP-Mn Complexes journal April 2012
Physiologically Relevant Metal Cofactor for Methionine Aminopeptidase-2 Is Manganese journal May 2003
Discovery of Inhibitors of Burkholderia pseudomallei Methionine Aminopeptidase with Antibacterial Activity journal July 2013
Data mining of metal ion environments present in protein structures journal September 2008
Inhibitory and Restorative Effects of Adenine Nucleotides on Rickettsial Adsorption and Hemolysis journal January 1974
Validation of metal-binding sites in macromolecular structures with the CheckMyMetal web server journal December 2013
Two methionine aminopeptidases from Acinetobacter baumannii are functional enzymes journal June 2011
Metal mediated inhibition of methionine aminopeptidase by quinolinyl sulfonamides journal January 2006
High-throughput protein production and purification at the Seattle Structural Genomics Center for Infectious Disease journal August 2011
Substituted oxines inhibit endothelial cell proliferation and angiogenesis journal January 2012
Carboxylic Acid (Bio)Isosteres in Drug Design journal January 2013
Structural analysis of metalloform-selective inhibition of methionine aminopeptidase journal March 2006
Structural and functional characteristics of lung macro- and microvascular endothelial cell phenotypes journal March 2004
The history of epidemic typhus journal March 2004
Subtype-selectivity of metal-dependent methionine aminopeptidase inhibitors journal July 2010
The 1.15Å Crystal Structure of the Staphylococcus aureus Methionyl-aminopeptidase and Complexes with Triazole Based Inhibitors journal September 2003
A century of typhus, lice and Rickettsia journal March 2000
An orally delivered small-molecule formulation with antiangiogenic and anticancer activity journal June 2008
FE(II) Is the Native Cofactor for Escherichia coli Methionine Aminopeptidase journal October 2008
Catalysis and Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidase journal December 2009
MolProbity : all-atom structure validation for macromolecular crystallography journal December 2009
Ligation-independent cloning of PCR products (LIC-PCR) journal January 1990
Features and development of Coot journal March 2010
Role of Aminopeptidase in Angiogenesis journal January 2004
Analyzing the binding of Co(II)-specific inhibitors to the methionyl aminopeptidases from Escherichia coli and Pyrococcus furiosus journal February 2009
Chemistry: Chemical con artists foil drug discovery journal September 2014
Infection of Endothelial Cells with Virulent Rickettsia prowazekii Increases the Transmigration of Leukocytes journal January 2008
Structure of an ADP-ribosylation factor, ARF1, from Entamoeba histolytica bound to Mg 2+ –GDP journal April 2015
Metalloform-selective inhibition: Synthesis and structure–activity analysis of Mn(II)-form-selective inhibitors of Escherichia coli methionine aminopeptidase journal December 2005
Increased Resistance to Chloramphenicol in Rickettsia Prowazekii with a note on Failure to Demonstrate Genetic Interaction Among Strains journal January 1962
Multispacer Typing of Rickettsia prowazekii Enabling Epidemiological Studies of Epidemic Typhus journal September 2005
Immobilized metal-affinity chromatography protein-recovery screening is predictive of crystallographic structure success journal August 2011
Highly Potent Inhibitors of Methionine Aminopeptidase-2 Based on a 1,2,4-Triazole Pharmacophore journal August 2007
Ionic Immobilization, Diversification, and Release: Application to the Generation of a Library of Methionine Aminopeptidase Inhibitors journal December 2007
Development of Novel Assays for Proteolytic Enzymes Using Rhodamine-Based Fluorogenic Substrates journal December 2002
Respiration of Typhus Rickettsiae journal June 1949
Phaser crystallographic software journal July 2007
Rickettsial hemolysis: rapid method for enumeration of metabolically active typhus rickettsiae journal May 1979

Cited By (1)