Modeling the mechanisms of biological GTP hydrolysis
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September 2015 |
Targeted molecular dynamics: A new approach for searching pathways of conformational transitions
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June 1994 |
Exploring Residue Component Contributions to Dynamical Network Models of Allostery
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July 2012 |
Structural insights into cognate versus near-cognate discrimination during decoding: Unique ribosome binding of near-cognate species
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March 2011 |
Impact of 2′-hydroxyl sampling on the conformational properties of RNA: Update of the CHARMM all-atom additive force field for RNA
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April 2011 |
Tuning the affinity of aminoacyl-tRNA to elongation factor Tu for optimal decoding
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March 2011 |
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
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December 2009 |
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
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January 2009 |
Delayed Release of Inorganic Phosphate from Elongation Factor Tu Following GTP Hydrolysis on the Ribosome †
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October 2006 |
Scalable molecular dynamics with NAMD
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January 2005 |
Elongation factor Tu, a GTPase triggered by codon recognition on the ribosome: mechanism and GTP consumption
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December 1995 |
From A to B in free energy space
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February 2007 |
Ensemble cryo-EM elucidates the mechanism of translation fidelity
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May 2017 |
Ribosome dynamics during decoding
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March 2017 |
Kinetic Mechanism of Elongation Factor Ts-Catalyzed Nucleotide Exchange in Elongation Factor Tu †
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January 2002 |
Converting structural information into an allosteric-energy-based picture for elongation factor Tu activation by the ribosome
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May 2011 |
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
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February 2013 |
A Catalytic Mechanism for Cysteine N-Terminal Nucleophile Hydrolases, as Revealed by Free Energy Simulations
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February 2012 |
SMOG@ctbp: simplified deployment of structure-based models in GROMACS
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June 2010 |
EF-Tu dynamics during pre-translocation complex formation: EF-Tu·GDP exits the ribosome via two different pathways
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September 2015 |
How EF-Tu can contribute to efficient proofreading of aa-tRNA by the ribosome
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October 2016 |
A unified formulation of the constant temperature molecular dynamics methods
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July 1984 |
Generalized correlation for biomolecular dynamics
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December 2005 |
PLUMED: A portable plugin for free-energy calculations with molecular dynamics
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October 2009 |
Simulating Dynamics in RNA–Protein Complexes
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book
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January 2012 |
Structure-function relationships of elongation factor Tu. Isolation and activity of the guanine-nucleotide-binding domain
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June 1989 |
WebLogo: A Sequence Logo Generator
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May 2004 |
Ribosome-induced tuning of GTP hydrolysis by a translational GTPase
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September 2014 |
The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer
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November 2004 |
Mechanism of activation of elongation factor Tu by ribosome: Catalytic histidine activates GTP by protonation
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July 2013 |
Dynamics of Recognition between tRNA and Elongation Factor Tu
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April 2008 |
The evolutionary and functional diversity of classical and lesser-known cytoplasmic and organellar translational GTPases across the tree of life
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February 2015 |
Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome
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July 1999 |
The crystal structure of Cys-tRNACys–EF-Tu–GDPNP reveals general and specific features in the ternary complex and in tRNA
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February 1999 |
Review: Translational GTPases
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May 2016 |
How Robust Are Protein Folding Simulations with Respect to Force Field Parameterization?
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May 2011 |
LINCS: A linear constraint solver for molecular simulations
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September 1997 |
Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method
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January 2008 |
Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ 1 and χ 2 Dihedral Angles
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August 2012 |
Structure-Function Relationships of the G Domain, a Canonical Switch Motif
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July 2011 |
Structural Snapshots of Actively Translating Human Ribosomes
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May 2015 |
A Kinetic Safety Gate Controlling the Delivery of Unnatural Amino Acids to the Ribosome
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October 2013 |
Canonical dynamics: Equilibrium phase-space distributions
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March 1985 |
Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates
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September 2008 |
Experimental and computational determination of tRNA dynamics
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November 2009 |
A simple method to control over-alignment in the MAFFT multiple sequence alignment program
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February 2016 |
Settle: An analytical version of the SHAKE and RATTLE algorithm for rigid water models
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October 1992 |
Dynamical networks in tRNA:protein complexes
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April 2009 |
Exceptionally large entropy contributions enable the high rates of GTP hydrolysis on the ribosome
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October 2015 |
Die Berechnung optischer und elektrostatischer Gitterpotentiale
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January 1921 |
Helix unwinding in the effector region of elongation factor EF-Tu–GDP
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October 1996 |
Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E.coli ribosome
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December 1998 |
The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA
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October 2009 |
VMD: Visual molecular dynamics
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February 1996 |
Exploring the Specificity of Bacterial Elongation Factor Tu for Different tRNAs
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May 2007 |
The elongation factor Tu binds aminoacyl-tRNA in the presence of GDP.
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October 1982 |