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Title: Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds

Journal Article · · Standards in Genomic Sciences
 [1];  [2];  [1];  [3];  [1];  [4];  [5];  [6];  [6];  [6];  [6];  [6];  [7];  [8];  [9];  [6];  [10];  [11];  [12]
  1. Sun Yat-Sen Univ., Guangzhou, (China). College of Life Science
  2. Newcastle Univ., Tyne (United Kingdom). School of Biology
  3. Chinese Academy of Sciences (CAS), Beijing (China). Key Lab. of Tropical Plant Resources and Sustainable Use
  4. King Saud Univ., Riyadh (Saudi Arabia). Bioproducts Research Chair; Beni-Suef Univ. (Egypt). Botany and Microbiology Dept.
  5. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); St. Petersburg State Univ. (Russia). Center for Algorithmic Biotechnology
  6. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  7. Leibniz Inst. for German Collection of Microorganisms and Cell Cultures (DSMZ), Braunschweig (Germany)
  8. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Biological Data Management and Technology Center
  9. Univ. of California, Davis, CA (United States)
  10. Leibniz Inst. for German Collection of Microorganisms and Cell Cultures (DSMZ), Braunschweig (Germany); Newcastle Univ., Tyne (United Kingdom). School of Biology
  11. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); King Abdulaziz Univ., Jeddah (Saudi Arabia). Dept. of Bilogical Sciences
  12. Sun Yat-Sen Univ., Guangzhou, (China). College of Life Science; Chinese Academy of Sciences (CAS), Beijing (China). Xinjiang Inst. of Ecology and Geography
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Jiangella gansuensis strain YIM 002T is the type strain of the type species of the genus Jiangella, which is at the present time composed of five species, and was isolated from desert soil sample in Gansu Province (China). The five strains of this genus are clustered in a monophyletic group when closer actinobacterial genera are used to infer a 16S rRNA gene sequence phylogeny. The study of this genome is part of the Genomic Encyclopedia of Bacteria and Archaea project, and here we describe the complete genome sequence and annotation of this taxon. The genome of J. gansuensis strain YIM 002T contains a single scaffold of size 5,585,780 bp, which involves 149 pseudogenes, 4905 protein-coding genes and 50 RNA genes, including 2520 hypothetical proteins and 4 rRNA genes. From the investigation of genome sizes of Jiangella species, J. gansuensis shows a smaller size, which indicates this strain might have discarded too much genetic information to adapt to desert environment. Seven new compounds from this bacterium have recently been described; however, its potential should be higher, as secondary metabolite gene cluster analysis predicted 60 gene clusters, including the potential to produce the pristinamycin.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231; AC52-07NA27344
OSTI ID:
1379721
Journal Information:
Standards in Genomic Sciences, Vol. 12, Issue 1; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 4 works
Citation information provided by
Web of Science

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Linked Research (5)

Figures / Tables (7)

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
jiangella gansuensis
jiangellales
desert
genome
taxonomic comments
GEBA