The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution
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journal
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January 2007 |
SCOP database in 2004: refinements integrate structure and sequence family data
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journal
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January 2004 |
On the Universe of Protein Folds
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May 2013 |
The Pfam Protein Families Database
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journal
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January 2002 |
Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space
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February 2006 |
The CATH database: an extended protein family resource for structural and functional genomics
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January 2003 |
Rebelling for a Reason: Protein Structural “Outliers”
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September 2013 |
The ASTRAL Compendium in 2004
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journal
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January 2004 |
Protein structure database search and evolutionary classification
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July 2006 |
ThreaDom: extracting protein domain boundary information from multiple threading alignments
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June 2013 |
Assessing the accuracy of template-based structure prediction metaservers by comparison with structural genomics structures
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October 2012 |
Protein homology detection by HMM-HMM comparison
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November 2004 |
Partitioning Protein Structures into Domains: Why Is it so Difficult?
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August 2006 |
Protein-protein docking benchmark version 4.0: Protein-Protein Docking Benchmark Version 4.0
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journal
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July 2010 |
N-Terminal Domains in Two-Domain Proteins Are Biased to Be Shorter and Predicted to Fold Faster Than Their C-Terminal Counterparts
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April 2013 |
The CATH Database provides insights into protein structure/function relationships
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January 1999 |
CATH – a hierarchic classification of protein domain structures
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August 1997 |
Bootstrapping and normalization for enhanced evaluations of pairwise sequence comparison
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December 2002 |
The ASTRAL compendium for protein structure and sequence analysis
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journal
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January 2000 |
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
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November 2004 |
Searching protein structure databases with DaliLite v.3
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September 2008 |
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties11Edited by B. Honig
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June 2001 |
SCOP: a Structural Classification of Proteins database
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journal
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January 2000 |
Capturing protein sequence-structure specificity using computational sequence design: Fold Recognition Using Designed Sequences
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June 2013 |
SCOP2 prototype: a new approach to protein structure mining
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journal
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November 2013 |
UCSF Chimera?A visualization system for exploratory research and analysis
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journal
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January 2004 |
SCOPe: Structural Classification of Proteins—extended, integrating SCOP and ASTRAL data and classification of new structures
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journal
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December 2013 |
The four-transmembrane protein IP39 of Euglena forms strands by a trimeric unit repeat
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April 2013 |
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies
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March 2012 |
Evolution of oligomeric state through geometric coupling of protein interfaces
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May 2012 |
The HHpred interactive server for protein homology detection and structure prediction
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July 2005 |
Pfam: A comprehensive database of protein domain families based on seed alignments
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journal
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July 1997 |
In vivo translation rates can substantially delay the cotranslational folding of the Escherichia coli cytosolic proteome
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December 2012 |
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
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journal
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September 1998 |
PASS2 version 4: An update to the database of structure-based sequence alignments of structural domain superfamilies
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journal
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November 2011 |
SCOP: A structural classification of proteins database for the investigation of sequences and structures
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journal
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April 1995 |
The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies
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journal
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January 2009 |
Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies
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journal
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November 2013 |
Classification of protein functional surfaces using structural characteristics
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journal
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January 2012 |
The Jpred 3 secondary structure prediction server
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May 2008 |
The Impact of Structural Genomics: Expectations and Outcomes
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journal
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January 2006 |
Accelerated Profile HMM Searches
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October 2011 |
Deconstruction of Activity-Dependent Covalent Modification of Heme in Human Neutrophil Myeloperoxidase by Multistage Mass Spectrometry (MS 4 )
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journal
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February 2012 |
SCOP: a Structural Classification of Proteins database
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journal
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January 1997 |
Origin and Evolution of Protein Fold Designs Inferred from Phylogenomic Analysis of CATH Domain Structures in Proteomes
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journal
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March 2013 |
SCOP: a Structural Classification of Proteins database
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journal
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January 1999 |
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure
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journal
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November 2001 |
Enhanced genome annotation using structural profiles in the program 3D-PSSM 1 1Edited by J. Thornton
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journal
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June 2000 |
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
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journal
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November 2012 |
SCOP, Structural Classification of Proteins Database: Applications to Evaluation of the Effectiveness of Sequence Alignment Methods and Statistics of Protein Structural Data
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journal
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November 1998 |
Extending CATH: increasing coverage of the protein structure universe and linking structure with function
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journal
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November 2010 |
Structure of Staphylococcal alpha -Hemolysin, a Heptameric Transmembrane Pore
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journal
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December 1996 |
Small-angle X-ray scattering constraints and local geometry like secondary structures can construct a coarse-grained protein model at amino acid residue resolution
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February 2013 |
Fast large-scale clustering of protein structures using Gauss integrals
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December 2011 |
Bacterial GRAS domain proteins throw new light on gibberellic acid response mechanisms
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July 2012 |
SCOP database in 2002: refinements accommodate structural genomics
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January 2002 |
Structural and functional analysis of the archaeal endonuclease Nob1
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December 2011 |
A holistic in silico approach to predict functional sites in protein structures
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May 2012 |
PSCDB: a database for protein structural change upon ligand binding
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journal
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November 2011 |
Identification of Domains in Protein Structures from the Analysis of Intramolecular Interactions
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March 2012 |
Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches
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journal
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November 2004 |
ASTRAL compendium enhancements
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journal
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January 2002 |
Protein structure prediction on the Web: a case study using the Phyre server
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February 2009 |
Three-dimensional domain swapping in the protein structure space: Three-Dimensional Domain Swapping
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journal
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March 2012 |
The Protein Data Bank
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journal
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January 2000 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
High-quality protein backbone reconstruction from alpha carbons using Gaussian mixture models
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journal
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May 2013 |
Anisotropy of Fluctuation Dynamics of Proteins with an Elastic Network Model
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journal
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January 2001 |
CATH: comprehensive structural and functional annotations for genome sequences
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journal
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October 2014 |
SGD: Saccharomyces Genome Database
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journal
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January 1998 |
Insights into the Fold Organization of TIM Barrel from Interaction Energy Based Structure Networks
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journal
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May 2012 |
Viral Capsid Proteins Are Segregated in Structural Fold Space
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February 2013 |