MicrobesOnline: an integrated portal for comparative and functional genomics
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November 2009 |
Niche adaptation by expansion and reprogramming of general transcription factors
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January 2011 |
Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator
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December 2012 |
Prevalence of transcription promoters within archaeal operons and coding sequences
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January 2009 |
A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability
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January 2009 |
General transcription factor specified global gene regulation in archaea
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March 2007 |
Transcription Regulation by Feast/Famine Regulatory Proteins, FFRPs, in Archaea and Eubacteria
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January 2008 |
A Structural Code for Discriminating between Transcription Signals Revealed by the Feast/Famine Regulatory Protein DM1 in Complex with Ligands
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October 2007 |
BarR, an Lrp-type transcription factor in S ulfolobus acidocaldarius , regulates an aminotransferase gene in a β-alanine responsive manner : BarR, a β-alanine responsive regulator
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April 2014 |
Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing
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December 2006 |
Lambda placMu insertions in genes of the leucine regulon: extension of the regulon to genes not regulated by leucine.
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March 1992 |
Inference of Expanded Lrp-Like Feast/Famine Transcription Factor Targets in a Non-Model Organism Using Protein Structure-Based Prediction
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September 2014 |
Genome sequence of Halobacterium species NRC-1
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October 2000 |
A Novel Ligand-binding Domain Involved in Regulation of Amino Acid Metabolism in Prokaryotes
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July 2002 |
Metallochaperones Regulate Intracellular Copper Levels
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January 2013 |
A systems view of haloarchaeal strategies to withstand stress from transition metals
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July 2006 |
Quantifying similarity between motifs
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January 2007 |
Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data
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January 2022 |
The anatomy of microbial cell state transitions in response to oxygen
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September 2007 |
Transcriptional control by two leucine-responsive regulatory proteins in Halobacterium salinarum R1
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January 2010 |
Unexpected Coregulator Range for the Global Regulator Lrp of Escherichia coli and Proteus mirabilis
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December 2010 |
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
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October 2013 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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March 2004 |
The ilvIH operon of Escherichia coli is positively regulated.
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August 1990 |
An integrated systems approach for understanding cellular responses to gamma radiation
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January 2006 |
A thermostable platform for transcriptional regulation: the DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii
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January 2001 |
The genome-wide binding profile of the Sulfolobus solfataricus transcription factor Ss-LrpB shows binding events beyond direct transcription regulation
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January 2013 |
A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell
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December 2007 |
Comprehensive Genome-wide Protein-DNA Interactions Detected at Single-Nucleotide Resolution
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December 2011 |
Feast/famine regulatory proteins (FFRPs): Escherichia coli Lrp, AsnC and related archaeal transcription factors
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January 2006 |
Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon
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November 2010 |
Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1
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May 2004 |
Coordination of frontline defense mechanisms under severe oxidative stress
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January 2010 |
The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.
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January 1994 |
Feast/Famine Regulation by Transcription Factor FL11 for the Survival of the Hyperthermophilic Archaeon Pyrococcus OT3
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December 2007 |
Expanded target and cofactor repertoire for the transcriptional activator LysM from Sulfolobus
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January 2013 |
An Update of DIVERGE Software for Functional Divergence Analysis of Protein Family
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April 2013 |
The DNA-recognition mode shared by archaeal feast/famine-regulatory proteins revealed by the DNA-binding specificities of TvFL3, FL10, FL11 and Ss-LrpB
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May 2009 |
Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus
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March 2001 |
Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
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April 2006 |
Model-based deconvolution of genome-wide DNA binding
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December 2007 |
METREE: a program package for inferring and testing minimum-evolution trees
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January 1994 |
Functional Diversification of Paralogous Transcription Factors via Divergence in DNA Binding Site Motif and in Expression
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June 2008 |
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains11Edited by F. Cohen
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April 2001 |
The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.
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January 1994 |
Coding limits on the number of transcription factors
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September 2006 |
An expanding family of archaeal transcriptional activators
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October 2005 |
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
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June 2006 |
Identification and Genomic Analysis of Transcription Factors in Archaeal Genomes Exemplifies Their Functional Architecture and Evolutionary Origin
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February 2010 |
Adaptation of cells to new environments: Adaptation of cells to new environments
- Brooks, Aaron N.; Turkarslan, Serdar; Beer, Karlyn D.
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Wiley Interdisciplinary Reviews: Systems Biology and Medicine, Vol. 3, Issue 5
https://doi.org/10.1002/wsbm.136
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December 2010 |
Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families
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November 2009 |