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  1. Community dynamics drive calcium carbonate production in an enriched consortium of soil microbes

    Recently, there has been a focus on using soil microbes as a means to store carbon in the soil in the form of calcium carbonate as a way to reduce atmospheric CO2. The molecular processes, and some of the individual species, involved in microbially induced calcium carbonate formation are known but there is still a significant knowledge gap regarding how community interactions, emergent processes that are distinct from the roles of individual members, may drive the formation of carbonate. To answer these questions, we describe the development and application of a community of soil microbes consisting of one species each of the Rhodococcus, Microbacterium and Curtobacterium genera and two species from the Bacillus genera. We term these five species cultivated together carbon storing community A (CSC-A). Growth assays show that only a subset of CSC-A members produce CaCO3 with Rhodococcus producing the most CaCO3 but that the CSC-A community produces almost twice as much CaCO3 as sum total carbonate produced by all member species. The development of CSC-A shows that CaCO3 production may be as much a community process as it is the contribution of individual species, requiring us to move beyond single species analysis to fully understand carbonate formation by microbial communities in nature. CSC-A will allow the scientific community to ask and answer key questions about the molecular interactions surrounding carbon sequestration in soil, an important knowledge gap that must be filled if we wish to harness soil systems for long term storage of carbon from the atmosphere.

  2. Continual Learning for Particle Accelerators

    Particle accelerators operate under dynamically changing conditions, which often lead to data distribution drifts. These drifts pose significant challenges for Machine Learning (ML) models, which typically fail to maintain performance when faced with such non-stationary data. In particle accelerators, the primary sources of these data drifts include changes in accelerator settings and non-measured parameters such as machine degradation and environmental factors. Previous research has proposed conditional models to handle multiple beam configurations effectively; however, it is challenging to train the ML models on all possible configuration settings. Additionally, conditional models alone can not address performance degradation caused by drifts due to non-measured factors. These limitations contribute to a significant gap between ML development and its deployment in real-world operational settings. To bridge this gap, in this paper, we identify some of the key areas within particle accelerators where continual learning can help mitigate drift-induced performance degradation. In addition, we present a practical use case where a conditional Auto-Encoder model coupled with memory-based continual learning has been employed to demonstrate stable performance even when underlying data drifts.

  3. Continual Learning for Particle Accelerators

    Particle accelerators operate under dynamically changing conditions, which often lead to data distribution drifts. These drifts pose significant challenges for Machine Learning (ML) models, which typically fail to maintain performance when faced with such non-stationary data. In particle accelerators, the primary sources of these data drifts include changes in accelerator settings and non-measured parameters such as machine degradation and environmental factors. Previous research has proposed conditional models to handle multiple beam configurations effectively; however, it is challenging to train the ML models on all possible configuration settings. Additionally, conditional models alone can not address performance degradation caused by drifts due to non-measured factors. These limitations contribute to a significant gap between ML development and its deployment in real-world operational settings. To bridge this gap, in this paper, we identify some of the key areas within particle accelerators where continual learning can help mitigate drift-induced performance degradation. In addition, we present a practical use case where a conditional Auto-Encoder model coupled with memory-based continual learning has been employed to demonstrate stable performance even when underlying data drifts

  4. Conversion of CO2 from power plant into CaCO3 nanoparticles

    Carbon dioxide (CO2), a main composition of flue gas, represents a significant and largely untapped carbon resource. Herein, mediated by glycine (Gly), we captured and converted CO2 into CaCO3 nanoparticles using real flue gas from a power plant, demonstrating for the first time the feasibility of using amino acid to convert CO2 from power plant flue gasses. The method did not require extraneous energy and CaCO3 nanoparticles with a size of ∼25 nm were obtained. Moreover, the potential toxicity of CO2-converted nanoparticles was investigated. It appeared that both the initial CO2 loading and the carbamate percentage significantly influence the shape and size of the CaCO3 particles. Our method was also proven effective for flue gas with varying CO2 concentrations (4 %, 12 %, and 20 %). By tuning flue gas bubbling time and flow rate to achieve consistent CO2 loading and carbamate levels, we produced CaCO3 nanoparticles with similar shapes and sizes across all CO2 concentrations studied. In addition, our data indicated that although real flue gas contains small amounts of gases like oxygen and CO, they insignificantly influence the shape and size of our nanoparticles but did impact the phase component of CaCO3. In conclusion, the toxicity experiments found that CaCO3 nanoparticles produced from both real flue gas and simulated flue gas exhibited concentration- and time-dependent effects on cell viability.

  5. Thermo-hydro-mechanical analysis of subsurface ice-based thermal energy storage

    Ice-based thermal energy storage systems are widely utilized for cooling and managing peak electrical demand globally, offering daily or weekly storage capabilities for both individual homes and larger office buildings. However, scaling these systems for district-level cooling or integrating them with renewable energy sources presents challenges, especially in accommodating larger volumes and addressing seasonal storage requirements in densely populated urban areas. This paper proposes a novel solution by evaluating subsurface ice-based thermal energy storage, in which the underground is subjected to seasonal freeze/thaw cycles. However, these cycles may influence ground behavior, affecting pore pressure and inducing ground movement. To systematically investigate these challenges, we enhance the TOUGH-FLAC simulator by integrating water/ice phase change capabilities and updating the effective stress–strain constitutive relation. Both modifications are validated against analytical solutions or experimental data. Through numerical simulations spanning a decade with ten seasonal freeze/thaw cycles, we evaluate the performance and long-term stability of a generic subsurface ice-based thermal energy storage system, considering factors such as ground permeability, freezing pipe spacing, freeze/thaw damage, and glycol solution temperature. The simulations indicate that ice formation induces pore pressure variations that drive seasonal surface heave and settlement, controlled by ground permeability, pipe spacing, and glycol solution temperature, along with tensile and localized shear deformation around freeze pipes. This highlights the need for accurate ground property characterization and geomechanical analysis for subsurface ice-based thermal energy storage.

  6. Discovery, characterization, and application of chromosomal integration sites in the hyperthermophilic archaeon Sulfolobus islandicus

    Sulfolobus islandicus, an emerging archaeal model organism, offers unique advantages for metabolic engineering and synthetic biology applications owing to its ability to thrive in extreme environments. Although several genetic tools have been established for this organism, the lack of well-characterized chromosomal integration sites has limited its potential as a cellular factory. Here, in this work, we systematically identified and characterized 13 artificial CRISPR RNAs targeting eight integration sites in S. islandicus using the CRISPR-COPIES pipeline and a multi-omics-informed computational workflow. We leveraged the endogenous CRISPR-Cas system to integrate the reporter gene lacS and validated heterologous expression through a β-galactosidase assay, revealing significant positional effects. As a proof of concept, we utilized these sites to genetically manipulate lipid ether composition by overexpressing glycerol dibiphytanyl glycerol tetraether (GDGT) ring synthase B (GrsB). This study expands the genetic toolbox for S. islandicus and advances its potential as a robust platform for archaeal synthetic biology and industrial biotechnology.

  7. Metabolic flux and resource balance in the oleaginous yeast Rhodotorula toruloides

    The yeast Rhodotorula toruloides is a promising bioproduction organism due to its high lipid yields and ability to grow on cheap and abundant substrates. Quantitative, systems-level assessment of its metabolic activity is accordingly merited. Resource-balance analysis (RBA) models capture not only reaction stoichiometry but also enzyme requirements for catalysis, providing valuable tools for understanding metabolic trade-offs and optimizing metabolic engineering strategies. Here, in this work, we present systems-level measurements of R. toruloides metabolic flux based on isotope tracing and metabolic flux analysis. In combination with new proteomic measurements, these flux data are used to parameterize a genome-scale resource balance model rtRBA. We find that S. cerevisiae and R. toruloides grow at nearly indistinguishable rates using similar biosynthetic but dramatically different central metabolic programs. R. toruloides consumes one-fifth as much glucose, which it metabolizes primarily via the pentose phosphate pathway and TCA cycle unlike primarily glycolysis in S. cerevisiae. Overall, across these two divergent yeasts, protein abundances aligned more closely than metabolic flux. Resource balance modeling of these metabolic programs predicts superior theoretical yields but lower productivities in R. toruloides than S. cerevisiae for industrial chemicals, highlighting the value of rapid glucose uptake for productivity but respiratory metabolism for yields.

  8. A North Carolina Retrospective: Major Outage Event Trends & Hurricane Helene using TASTI-GRID

    The impacts of Hurricane Helene in September of 2024 showed magnifying effects on the number of major power outages reported both during and after the catastrophic weather event. The affected areas on the western edge of North Carolina, particularly Buncombe County (Asheville), endured a disproportionate number of outage impacts than surrounding counties atop the Piedmont Plateau. In 2024, each of the counties with the highest frequency of major outage events received at least one category of FEMA Disaster Declaration following Hurricane Helene. While the storm’s impacts certainly skewed 2024’s yearly major outage frequencies, we use TASTI-GRID to identify existence resilience challenges in the years prior to 2024 that may have given way to understanding how geography, topography, population density and other factors have compounding effects on existing resilience challenges in Buncombe and Mecklenburg counties, specifically.

  9. A bioinspired approach for adaptive solid-solid phase change material coatings with optimized surface features for passive thermal regulation

    The necessity to reduce global energy consumption calls for innovative strategies in building thermal management. Passive thermal regulation, particularly through bio-inspired designs, offers a promising avenue by mimicking nature's efficient control of optical properties. This research introduces a novel, climate-responsive coating that integrates optimized bio-inspired surface features with a solid-solid phase change material (SS-PCM) to dynamically manage solar absorptivity without adding additional thickness, enabling both heating and cooling as needed. Drawing on the photonic architectures of the Saharan silver ant and Morpho Didius butterfly, we employed a modeling and multi-objective optimization framework to tailor these surface features. Simulations reveal that surface texture, rather than the intrinsic phase transition of the SS PCM, dominates optical control. Relative to a flat SS PCM coating, optimized isotropic random roughness and broader range features yielded the highest passive heating power increase of about 144 % and 319 % respectively suitable for cold climates. Saharan ant-inspired features enhanced passive cooling for hot climates, achieving a 21.8 % improvement. For moderate climates, Butterfly-wing-inspired surface features provided a balanced enhancement of 19 % for heating and 7 % for cooling. Across all cases, the optimized surface features reduced combined heating and cooling energy demand more effectively than the baseline coating, while preserving material thickness. These findings demonstrate that climate-adaptive, optimized bio-inspired surface features can unlock the full potential of SS PCM coatings, providing a versatile pathway to significant energy savings in buildings and other applications. The methodology establishes a framework for designing next-generation adaptive envelopes that leverage natural photonic principles for high-impact, low-cost thermal regulation.

  10. Investigation of irradiation damage and heat deposition: a comparative analysis for HEU-to-LEU conversion in HFIR

    The planned conversion of the High Flux Isotope Reactor (HFIR) at Oak Ridge National Laboratory from highly enriched uranium (HEU) to low-enriched uranium (LEU) fuel requires detailed evaluation of experiment-relevant parameters to ensure continued performance for materials testing and isotope production. This study presents the first comprehensive assessment of displacements per atom (dpa) and heat deposition rates in target materials within the HFIR flux trap with both HEU and candidate LEU core configurations. Seven analyses were conducted to evaluate key performance metrics, including fast neutron flux distribution, cross section response functions, cross section data, and local dpa and heat deposition rates using mesh- and cell-based tallies. Simulations employed Shift, Monte Carlo N-Particle (MCNP), and the HIFR Controller (HFIRCON) tool suite for high-fidelity transport and depletion modeling. The LEU designs—using U3Si2-Al dispersion fuel and operating at 95 MW—were compared to the current 85 MW HEU configuration. Results show that while the candidate LEU cores exhibit higher dpa rates due to a harder spectrum and extended cycle lengths, they also demonstrate reduced heat deposition rates in irradiation experiments, primarily due to increased gamma self-shielding from higher 238U content in the core. These findings confirm that LEU conversion can maintain HFIR’s materials irradiation capabilities but may require redesigning existing experimental hardware.


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