Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

Kappler, Ulrike; Davenport, Karen; Beatson, Scott; Lapidus, Alla; Pan, Chongle; Han, Cliff; Montero-Calasanz, Maria del Carmen; Land, Miriam; Hauser, Loren; Rohde, Manfred; Göker, Markus; Ivanova, Natalia; Woyke, Tanja; Klenk, Hans-Peter; Kyrpides, Nikos C.

doi:10.1186/s40793-016-0162-x

Title: Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

Journal Article · Fri Jun 03 00:00:00 EDT 2016 · Standards in Genomic Sciences

DOI:https://doi.org/10.1186/s40793-016-0162-x· OSTI ID:1618957

Kappler, Ulrike; Davenport, Karen; Beatson, Scott; Lapidus, Alla; Pan, Chongle; Han, Cliff; Montero-Calasanz, Maria del Carmen; Land, Miriam; Hauser, Loren; Rohde, Manfred; Göker, Markus; Ivanova, Natalia; Woyke, Tanja; Klenk, Hans-Peter; Kyrpides, Nikos C.

© 2016 The Author(s). Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing bacteria isolated from saline soda lakes with stable alkaline pH, such as Lake Mono (California) and Soap Lake (Washington State). Strain ALM 1 T is characterized by its adaptation to life in the oxic/anoxic interface towards the less saline aerobic waters (mixolimnion) of the stable stratified alkaline salt lakes. Strain ALM 1 T is the first representative of the genus Thioalkalimicrobium whose genome sequence has been deciphered and the fourth genome sequence of a type strain of the Piscirickettsiaceae to be published. The 1,932,455 bp long chromosome with its 1,684 protein-coding and 50 RNA genes was sequenced as part of the DOE Joint Genome Institute Community Sequencing Program (CSP) 2008.

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Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725

OSTI ID:: 1618957

Alternate ID(s):: OSTI ID: 1261543; OSTI ID: 1379383

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Vol. 11 Journal Issue: 1; ISSN 1944-3277

Publisher:: Springer Science + Business MediaCopyright Statement

Country of Publication:: United Kingdom

Language:: English

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Cited by: 5 works

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aerobic
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Title: Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

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