Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.
CGP; 003362WKSTN00 LLNL-CODE-669632
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Open Source Software Package available from Lawrence Livermore National Laboratory at the following URL: https://github.com/carolzhou/Genome
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Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
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Software Package Details
Title: Compare Gene Profiles
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