Compare Gene Profiles

Software · Sat May 31 00:00:00 EDT 2014

OSTI ID:1232077

Compare Gene Profiles (CGP) performs pairwise gene content comparisons among a relatively large set of related bacterial genomes. CGP performs pairwise BLAST among gene calls from a set of input genome and associated annotation files, and combines the results to generate lists of common genes, unique genes, homologs, and genes from each genome that differ substantially in length from corresponding genes in the other genomes. CGP is implemented in Python and runs in a Linux environment in serial or parallel mode.

• Short Name / Acronym: CGP; 003362WKSTN00
• Site Accession Number: LLNL-CODE-669632
• Version: 00
• Programming Language(s): Medium: X; OS: Linux RedHat; Compatibility: Workstation
• Research Organization: Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
• Sponsoring Organization: USDOE
• Contributing Organization: C. L. Ecale Zhou
• DOE Contract Number: AC52-07NA27344
• OSTI ID: 1232077
• Country of Origin: United States