Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)

Journal Article · Fri Jan 01 00:00:00 EST 2010 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.1133078· OSTI ID:1032820

Pitluck, Sam ^[1]; Yasawong, Montri ^[2]; Munk, Christine ^[1]; Nolan, Matt ^[1]; Lapidus, Alla L ^[1]; Lucas, Susan ^[1]; Glavina Del Rio, Tijana ^[1]; Tice, Hope ^[1]; Cheng, Jan-Fang ^[1]; Bruce, David ^[1]; Detter, J Chris ^[1]; Tapia, Roxanne ^[3]; Han, Cliff ^[3]; Goodwin, Lynne A ^[3]; Liolios, Konstantinos ^[1]; Ivanova, N ^[1]; Mavromatis, K ^[1]; Mikhailova, Natalia ^[1]; Pati, Amrita ^[1]; Chen, Amy ^[1] ; Palaniappan, Krishna ^[1]; Land, Miriam L ^[4]; Hauser, Loren John ^[4]; Chang, Yun-Juan ^[4]; Jeffries, Cynthia ^[5]; Rohde, Manfred ^[2]; Spring, Stefan ^[6]; Sikorski, Johannes ^[6]; Goker, Markus ^[6]; Woyke, Tanja ^[1]; Bristow, James ^[1]; Eisen, Jonathan ^[1]; Markowitz, Victor ^[1]; Hugenholtz, Philip ^[1]; Kyrpides, Nikos C ^[1]; Klenk, Hans-Peter ^[6]

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1. U.S. Department of Energy, Joint Genome Institute
2. HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany
3. Los Alamos National Laboratory (LANL)
4. ORNL
5. Oak Ridge National Laboratory (ORNL)
6. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany

Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study has been isolated from a core sample of deep sea sediments of the Peruvian high productivity upwelling system. This is the first completed genome sequence of a member of the genus Thermosediminibacter and the seventh genome sequence in the family Thermoanaerobacteraceae. The 2,280,035 bp long genome with its 2,285 protein-coding and 63 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

• Research Organization: Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
• Sponsoring Organization: Work for Others (WFO)
• DOE Contract Number: DE-AC05-00OR22725
• OSTI ID: 1032820
• Journal Information: Standards in Genomic Sciences, Vol. 3, Issue 2; ISSN 1944-3277
• Country of Publication: United States
• Language: English

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
BACTERIA
GENES
PRODUCTIVITY
RNA
SEAS
SEDIMENTS
STRAINS
UPWELLING
chemoorganotroph
anaerobe
thermophile
barophile
upwelling system
core sample
deep sea sediment
Thermoanaerobacterales
Firmicutes
GEBA