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Title: Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.1133078· OSTI ID:1630541
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  1. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  2. Helmholtz Centre for Infection Research, Braunschweig (Germany)
  3. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)
+ Show Author Affiliations

Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sample of deep sea sediments of the Peruvian high productivity upwelling system. This is the first completed genome sequence of a member of the genus Thermosediminibacter and the seventh genome sequence in the family Thermoanaerobacteraceae. The 2,280,035 bp long genome with its 2,285 protein-coding and 63 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); German Research Foundation (DFG)
Grant/Contract Number:
AC02-05CH11231; AC52-07NA27344; AC02-06NA25396; AC05-00OR22725; INST 599/1-2; SI 1352/1-2
OSTI ID:
1630541
Journal Information:
Standards in Genomic Sciences, Vol. 3, Issue 4; ISSN 1944-3277
Publisher:
BioMed CentralCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 9 works
Citation information provided by
Web of Science

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Cited By (3)

First insights into the syntrophic acetate-oxidizing bacteria - a genetic study journal December 2012
A genomic approach to the cryptic secondary metabolome of the anaerobic world journal January 2013
A Genomic Signature and the Identification of New Sporulation Genes journal February 2013

Figures / Tables (7)

Figure 1(p. 3)figure Figure 1
Figure 2(p. 4)figure Figure 2
Table 1(p. 5)table Table 1
Table 2(p. 6)table Table 2
Figure 3(p. 7)figure Figure 3
Table 3(p. 7)table Table 3
Table 4(p. 8)table Table 4

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
chemoorganotroph
anaerobe
thermophile
barophile
upwelling system
core sample
deep sea sediment
Thermoanaerobacterales
Firmicutes
GEBA