Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)

Pitluck, Sam; Yasawong, Montri; Munk, Christine; Nolan, Matt; Lapidus, Alla; Lucas, Susan; Glavina Del Rio, Tijana; Tice, Hope; Cheng, Jan-Fang; Bruce, David; Detter, Chris; Tapia, Roxanne; Han, Cliff; Goodwin, Lynne; Liolios, Konstantinos; Ivanova, Natalia; Mavromatis, Konstantinos; Mikhailova, Natalia; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jeffries, Cynthia D.; Rohde, Manfred; Spring, Stefan; Sikorski, Johannes; Göker, Markus; Woyke, Tanja; Bristow, James; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter

doi:10.4056/sigs.1133078

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228P^T)

Journal Article · Sun Oct 31 00:00:00 EDT 2010 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.1133078· OSTI ID:1630541

Pitluck, Sam ^[1]; Yasawong, Montri ^[2]; Munk, Christine ^[3]; Nolan, Matt ^[1]; Lapidus, Alla ^[1]; Lucas, Susan ^[1]; Glavina Del Rio, Tijana ^[1]; Tice, Hope ^[1]; Cheng, Jan-Fang ^[1]; Bruce, David ^[3]; Detter, Chris ^[3]; Tapia, Roxanne ^[3]; Han, Cliff ^[3]; Goodwin, Lynne ^[3]; Liolios, Konstantinos ^[1]; Ivanova, Natalia ^[1]; Mavromatis, Konstantinos ^[1]; Mikhailova, Natalia ^[1]; Pati, Amrita ^[1]; Chen, Amy ^[4] more »

USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Helmholtz Centre for Infection Research, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); Univ. of California, Davis, CA (United States)

Thermosediminibacter oceani (Lee et al. 2006) is the type species of the genus Thermosediminibacter in the family Thermoanaerobacteraceae. The anaerobic, barophilic, chemoorganotrophic thermophile is characterized by straight to curved Gram-negative rods. The strain described in this study was isolated from a core sample of deep sea sediments of the Peruvian high productivity upwelling system. This is the first completed genome sequence of a member of the genus Thermosediminibacter and the seventh genome sequence in the family Thermoanaerobacteraceae. The 2,280,035 bp long genome with its 2,285 protein-coding and 63 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

View Accepted Manuscript (DOE)

Research Organization:: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)

Sponsoring Organization:: German Research Foundation (DFG); USDOE Office of Science (SC), Biological and Environmental Research (BER)

Grant/Contract Number:: AC02-05CH11231; AC05-00OR22725; AC52-07NA27344

OSTI ID:: 1630541

Alternate ID(s):: OSTI ID: 1032820

Journal Information:: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 4 Vol. 3; ISSN 1944-3277

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
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Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)

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References (22)

Cited By (3)

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