Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis
Abstract
Arbuscular mycorrhizal symbiosis (AMS) is widespread mutualistic association between plants and fungi, which plays an essential role in nutrient exchange, enhancement in plant stress resistance, development of host, and ecosystem sustainability. Previous studies have shown that plant small secreted proteins (SSPs) are involved in beneficial symbiotic interactions. However, the role of SSPs in the evolution of AMS has not been well studied yet. In this study, we performed computational analysis of SSPs in 60 plant species and identified three AMS-specific ortholog groups containing SSPs only from at least 30% of the AMS species in this study and three AMS-preferential ortholog groups containing SSPs from both AMS and non-AMS species, with AMS species containing significantly more SSPs than non-AMS species. We found that independent lineages of monocot and eudicot plants contained genes in the AMS-specific ortholog groups and had significant expansion in the AMS-preferential ortholog groups. Also, two AMS-preferential ortholog groups showed convergent changes, between monocot and eudicot species, in gene expression in response to arbuscular mycorrhizal fungus Rhizophagus irregularis. Furthermore, conserved cis-elements were identified in the promoter regions of the genes showing convergent gene expression. We found that the SSPs, and their closely related homologs, in each of three AMS-preferentialmore »
- Authors:
-
[4];
[5];
[5];
[7]
- Univ. of Tennessee, Knoxville, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Zhejiang A&F Univ., Hangzhou (China). State Key Laboratory of Subtropical Silviculture
- Utah State Univ., Logan, UT (United States)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Center for Bioenergy Innovation (CBI)
- (Max) [Univ. of Tennessee, Knoxville, TN (United States); Nanjing Agricultural Univ. (China)
- Univ. of Tennessee, Knoxville, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States). Center for Bioenergy Innovation (CBI)
- Publication Date:
- Research Org.:
- Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); National Natural Science Foundation of China (NSFC)
- OSTI Identifier:
- 1873832
- Grant/Contract Number:
- AC05-00OR22725; 32171814
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Horticulture Research (online)
- Additional Journal Information:
- Journal Name: Horticulture Research (online); Journal Volume: 9; Journal Issue: na; Journal ID: ISSN 2052-7276
- Publisher:
- Springer Nature - Nanjing Agricultural University
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES
Citation Formats
Hu, Xiao-Li, Zhang, Jin, Kaundal, Rakesh, Kataria, Raghav, Labbé, Jesse L., Mitchell, Julie C., Tschaplinski, Timothy J., Tuskan, Gerald A., Cheng, Zong-Ming, and Yang, Xiaohan. Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis. United States: N. p., 2022.
Web. doi:10.1093/hr/uhac043.
Hu, Xiao-Li, Zhang, Jin, Kaundal, Rakesh, Kataria, Raghav, Labbé, Jesse L., Mitchell, Julie C., Tschaplinski, Timothy J., Tuskan, Gerald A., Cheng, Zong-Ming, & Yang, Xiaohan. Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis. United States. https://doi.org/10.1093/hr/uhac043
Hu, Xiao-Li, Zhang, Jin, Kaundal, Rakesh, Kataria, Raghav, Labbé, Jesse L., Mitchell, Julie C., Tschaplinski, Timothy J., Tuskan, Gerald A., Cheng, Zong-Ming, and Yang, Xiaohan. Sat .
"Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis". United States. https://doi.org/10.1093/hr/uhac043. https://www.osti.gov/servlets/purl/1873832.
@article{osti_1873832,
title = {Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal symbiosis},
author = {Hu, Xiao-Li and Zhang, Jin and Kaundal, Rakesh and Kataria, Raghav and Labbé, Jesse L. and Mitchell, Julie C. and Tschaplinski, Timothy J. and Tuskan, Gerald A. and Cheng, Zong-Ming and Yang, Xiaohan},
abstractNote = {Arbuscular mycorrhizal symbiosis (AMS) is widespread mutualistic association between plants and fungi, which plays an essential role in nutrient exchange, enhancement in plant stress resistance, development of host, and ecosystem sustainability. Previous studies have shown that plant small secreted proteins (SSPs) are involved in beneficial symbiotic interactions. However, the role of SSPs in the evolution of AMS has not been well studied yet. In this study, we performed computational analysis of SSPs in 60 plant species and identified three AMS-specific ortholog groups containing SSPs only from at least 30% of the AMS species in this study and three AMS-preferential ortholog groups containing SSPs from both AMS and non-AMS species, with AMS species containing significantly more SSPs than non-AMS species. We found that independent lineages of monocot and eudicot plants contained genes in the AMS-specific ortholog groups and had significant expansion in the AMS-preferential ortholog groups. Also, two AMS-preferential ortholog groups showed convergent changes, between monocot and eudicot species, in gene expression in response to arbuscular mycorrhizal fungus Rhizophagus irregularis. Furthermore, conserved cis-elements were identified in the promoter regions of the genes showing convergent gene expression. We found that the SSPs, and their closely related homologs, in each of three AMS-preferential ortholog groups, had some local variations in the protein structural alignment. We also identified genes co-expressed with the Populus trichocarpa SSP genes in the AMS-preferential ortholog groups. This first plant kingdom-wide analysis on SSP provides insights on plant-AMS convergent evolution with specific SSP gene expression and local diversification of protein structures.},
doi = {10.1093/hr/uhac043},
journal = {Horticulture Research (online)},
number = na,
volume = 9,
place = {United States},
year = {Sat Feb 19 00:00:00 EST 2022},
month = {Sat Feb 19 00:00:00 EST 2022}
}
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