DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Climate-Driven Legacies in Simulated Microbial Communities Alter Litter Decomposition Rates

Abstract

The mechanisms underlying diversity-functioning relationships have been a consistent area of inquiry in biogeochemistry since the 1950s. Though these mechanisms remain unresolved in soil microbiomes, many approaches at varying scales have pointed to the same notion—composition matters. Confronting the methodological challenge arising from the complexity of microbiomes, this study used the model DEMENTpy, a trait-based modeling framework, to explore trait-based drivers of microbiome-dependent litter decomposition. We parameterized DEMENTpy for five sites along a climate gradient in Southern California, United States, and conducted reciprocal transplant simulations analogous to a prior empirical study. The simulations demonstrated climate-dependent legacy effects of microbial communities on plant litter decomposition across the gradient. This result is consistent with the previous empirical study across the same gradient. An analysis of community-level traits further suggests that a 3-way tradeoff among resource acquisition, stress tolerance, and yield strategies influences community assembly. Simulated litter decomposition was predictable with two community traits (indicative of two of the three strategies) plus local environment, regardless of the system state (transient vs. equilibrium). Although more empirical confirmation is still needed, community traits plus local environmental factors (e.g., environment and litter chemistry) may robustly predict litter decomposition across spatial-temporal scales. In conclusion, this study offersmore » a potential trait-based explanation for climate-dependent community effects on litter decomposition with implications for improved understanding of whole-ecosystem functioning across scales.« less

Authors:
 [1];  [2]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of California, Irvine, CA (United States)
  2. Univ. of California, Irvine, CA (United States)
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States); Univ. of California, Irvine, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Science Foundation (NSF); USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science (BSS)
OSTI Identifier:
1871864
Alternate Identifier(s):
OSTI ID: 2263440
Grant/Contract Number:  
AC05-00OR22725; SC0020382; DEB-1457160
Resource Type:
Accepted Manuscript
Journal Name:
Frontiers in Ecology and Evolution
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 2296-701X
Publisher:
Frontiers Research Foundation
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 54 ENVIRONMENTAL SCIENCES; microbiome; composition; decomposition; trait; tradeoff; climate; litter; legacy

Citation Formats

Wang, Bin, and Allison, Steven D. Climate-Driven Legacies in Simulated Microbial Communities Alter Litter Decomposition Rates. United States: N. p., 2022. Web. doi:10.3389/fevo.2022.841824.
Wang, Bin, & Allison, Steven D. Climate-Driven Legacies in Simulated Microbial Communities Alter Litter Decomposition Rates. United States. https://doi.org/10.3389/fevo.2022.841824
Wang, Bin, and Allison, Steven D. Mon . "Climate-Driven Legacies in Simulated Microbial Communities Alter Litter Decomposition Rates". United States. https://doi.org/10.3389/fevo.2022.841824. https://www.osti.gov/servlets/purl/1871864.
@article{osti_1871864,
title = {Climate-Driven Legacies in Simulated Microbial Communities Alter Litter Decomposition Rates},
author = {Wang, Bin and Allison, Steven D.},
abstractNote = {The mechanisms underlying diversity-functioning relationships have been a consistent area of inquiry in biogeochemistry since the 1950s. Though these mechanisms remain unresolved in soil microbiomes, many approaches at varying scales have pointed to the same notion—composition matters. Confronting the methodological challenge arising from the complexity of microbiomes, this study used the model DEMENTpy, a trait-based modeling framework, to explore trait-based drivers of microbiome-dependent litter decomposition. We parameterized DEMENTpy for five sites along a climate gradient in Southern California, United States, and conducted reciprocal transplant simulations analogous to a prior empirical study. The simulations demonstrated climate-dependent legacy effects of microbial communities on plant litter decomposition across the gradient. This result is consistent with the previous empirical study across the same gradient. An analysis of community-level traits further suggests that a 3-way tradeoff among resource acquisition, stress tolerance, and yield strategies influences community assembly. Simulated litter decomposition was predictable with two community traits (indicative of two of the three strategies) plus local environment, regardless of the system state (transient vs. equilibrium). Although more empirical confirmation is still needed, community traits plus local environmental factors (e.g., environment and litter chemistry) may robustly predict litter decomposition across spatial-temporal scales. In conclusion, this study offers a potential trait-based explanation for climate-dependent community effects on litter decomposition with implications for improved understanding of whole-ecosystem functioning across scales.},
doi = {10.3389/fevo.2022.841824},
journal = {Frontiers in Ecology and Evolution},
number = 1,
volume = 10,
place = {United States},
year = {Mon Apr 04 00:00:00 EDT 2022},
month = {Mon Apr 04 00:00:00 EDT 2022}
}

Works referenced in this record:

Beyond Equilibria: The Neglected Role of History in Ecology and Evolution
journal, December 2020

  • Spencer, Hamish G.
  • The Quarterly Review of Biology, Vol. 95, Issue 4
  • DOI: 10.1086/711803

Biodiversity and Ecosystem Functioning
journal, November 2014


Interactions in self-assembled microbial communities saturate with diversity
journal, February 2019


Legacy of the Last Glacial on the present‐day distribution of deciduous versus evergreen boreal forests
journal, November 2019

  • Herzschuh, Ulrike
  • Global Ecology and Biogeography, Vol. 29, Issue 2
  • DOI: 10.1111/geb.13018

Consequences of drought tolerance traits for microbial decomposition in the DEMENT model
journal, April 2017


Drought and plant litter chemistry alter microbial gene expression and metabolite production
journal, May 2020


Range-expansion effects on the belowground plant microbiome
journal, March 2019

  • Ramirez, Kelly S.; Snoek, L. Basten; Koorem, Kadri
  • Nature Ecology & Evolution, Vol. 3, Issue 4
  • DOI: 10.1038/s41559-019-0828-z

Plant species traits are the predominant control on litter decomposition rates within biomes worldwide
journal, October 2008


Decomposition responses to climate depend on microbial community composition
journal, November 2018

  • Glassman, Sydney I.; Weihe, Claudia; Li, Junhui
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 47
  • DOI: 10.1073/pnas.1811269115

Quantifying microbial control of soil organic matter dynamics at macrosystem scales
journal, April 2021


Simple three-pool model accurately describes patterns of long-term litter decomposition in diverse climates
journal, August 2008


Biodiversity and ecosystem functioning: recent theoretical advances
journal, October 2000


The extent of functional redundancy changes as species’ roles shift in different environments
journal, November 2015

  • Fetzer, Ingo; Johst, Karin; Schäwe, Robert
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 48
  • DOI: 10.1073/pnas.1505587112

Drought legacies mediated by trait trade‐offs in soil microbiomes
journal, June 2021


Rebuilding community ecology from functional traits
journal, April 2006


A global method for calculating plant CSR ecological strategies applied across biomes world‐wide
journal, August 2016

  • Pierce, Simon; Negreiros, Daniel; Cerabolini, Bruno E. L.
  • Functional Ecology, Vol. 31, Issue 2
  • DOI: 10.1111/1365-2435.12722

Ecological rules for the assembly of microbiome communities
journal, February 2021


Defining trait-based microbial strategies with consequences for soil carbon cycling under climate change
journal, September 2019

  • Malik, Ashish A.; Martiny, Jennifer B. H.; Brodie, Eoin L.
  • The ISME Journal, Vol. 14, Issue 1
  • DOI: 10.1038/s41396-019-0510-0

Microbial Diversity and Ecosystem Function
journal, November 1997

  • Finlay, Bland J.; Maberly, Stephen C.; Cooper, J. Ian
  • Oikos, Vol. 80, Issue 2
  • DOI: 10.2307/3546587

Advances in constraint-based modelling of microbial communities
journal, September 2021


An integrated framework of plant form and function: the belowground perspective
journal, July 2021

  • Weigelt, Alexandra; Mommer, Liesje; Andraczek, Karl
  • New Phytologist, Vol. 232, Issue 1
  • DOI: 10.1111/nph.17590

Abundance determines the functional role of bacterial phylotypes in complex communities
journal, June 2018


Microbial volatile organic compounds in intra-kingdom and inter-kingdom interactions
journal, February 2021

  • Weisskopf, Laure; Schulz, Stefan; Garbeva, Paolina
  • Nature Reviews Microbiology, Vol. 19, Issue 6
  • DOI: 10.1038/s41579-020-00508-1

Resistance, resilience, and redundancy in microbial communities
journal, August 2008

  • Allison, S. D.; Martiny, J. B. H.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue Supplement 1
  • DOI: 10.1073/pnas.0801925105

Adaptive differentiation and rapid evolution of a soil bacterium along a climate gradient
journal, April 2021

  • Chase, Alexander B.; Weihe, Claudia; Martiny, Jennifer B. H.
  • Proceedings of the National Academy of Sciences, Vol. 118, Issue 18
  • DOI: 10.1073/pnas.2101254118

Belowground biodiversity and ecosystem functioning
journal, November 2014

  • Bardgett, Richard D.; van der Putten, Wim H.
  • Nature, Vol. 515, Issue 7528
  • DOI: 10.1038/nature13855

Effect of silver nano-particles on soil microbial growth, activity and community diversity in a sandy loam soil
journal, January 2017


Metabolite discovery through global annotation of untargeted metabolomics data
journal, October 2021


The global spectrum of plant form and function
journal, December 2015

  • Díaz, Sandra; Kattge, Jens; Cornelissen, Johannes H. C.
  • Nature, Vol. 529, Issue 7585
  • DOI: 10.1038/nature16489

Demographic trade-offs predict tropical forest dynamics
journal, April 2020


Microbial abundance and composition influence litter decomposition response to environmental change
journal, March 2013

  • Allison, Steven D.; Lu, Ying; Weihe, Claudia
  • Ecology, Vol. 94, Issue 3
  • DOI: 10.1890/12-1243.1

Biodiversity matters in feedbacks between climate change and air quality: a study using an individual-based model
journal, April 2018

  • Wang, Bin; Shuman, Jacquelyn; Shugart, Herman H.
  • Ecological Applications, Vol. 28, Issue 5
  • DOI: 10.1002/eap.1721

Towards a multidimensional root trait framework: a tree root review
journal, May 2016

  • Weemstra, Monique; Mommer, Liesje; Visser, Eric J. W.
  • New Phytologist, Vol. 211, Issue 4
  • DOI: 10.1111/nph.14003

Tree diversity and soil chemical properties drive the linkages between soil microbial community and ecosystem functioning
journal, August 2021


Trait dimensions in bacteria and archaea compared to vascular plants
journal, April 2021

  • Westoby, Mark; Gillings, Michael R.; Madin, Joshua S.
  • Ecology Letters, Vol. 24, Issue 7
  • DOI: 10.1111/ele.13742

Testing the functional significance of microbial community composition
journal, February 2009

  • Strickland, Michael S.; Lauber, Christian; Fierer, Noah
  • Ecology, Vol. 90, Issue 2
  • DOI: 10.1890/08-0296.1

A communal catalogue reveals Earth’s multiscale microbial diversity
journal, November 2017

  • Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel
  • Nature, Vol. 551, Issue 7681
  • DOI: 10.1038/nature24621

An Extra Dimension to Decision-Making in Animals: The Three-way Trade-off between Speed, Effort per-Unit-Time and Accuracy
journal, December 2014

  • de Froment, Adrian J.; Rubenstein, Daniel I.; Levin, Simon A.
  • PLoS Computational Biology, Vol. 10, Issue 12
  • DOI: 10.1371/journal.pcbi.1003937

Variation in home-field advantage and ability in leaf litter decomposition across successional gradients
journal, April 2018

  • Veen, G. F. Ciska; Keiser, Ashley D.; van der Putten, Wim H.
  • Functional Ecology, Vol. 32, Issue 6
  • DOI: 10.1111/1365-2435.13107

A trade-off between plant and soil carbon storage under elevated CO2
journal, March 2021


Metacommunity resilience against simulated gradients of wildfire: disturbance intensity and species dispersal ability determine landscape recover capacity
journal, May 2021

  • Cunillera‐Montcusí, David; Borthagaray, Ana Inés; Boix, Dani
  • Ecography, Vol. 44, Issue 7
  • DOI: 10.1111/ecog.05347

Decoupling function and taxonomy in the global ocean microbiome
journal, September 2016


Plant traits alone are poor predictors of ecosystem properties and long-term ecosystem functioning
journal, October 2020

  • van der Plas, Fons; Schröder-Georgi, Thomas; Weigelt, Alexandra
  • Nature Ecology & Evolution, Vol. 4, Issue 12
  • DOI: 10.1038/s41559-020-01316-9

A trait-based approach for modelling microbial litter decomposition
journal, May 2012


Extracellular enzyme kinetics and thermodynamics along a climate gradient in southern California
journal, November 2017


Evidence for a three-way trade-off between nitrogen and phosphorus competitive abilities and cell size in phytoplankton
journal, November 2011

  • Edwards, Kyle F.; Klausmeier, Christopher A.; Litchman, Elena
  • Ecology, Vol. 92, Issue 11
  • DOI: 10.1890/11-0395.1

Global diversity and geography of soil fungi
journal, November 2014


Geology and climate influence rhizobiome composition of the phenotypically diverse tropical tree Tabebuia heterophylla
journal, April 2020


Global change shifts trade‐offs among ecosystem functions in woodlands restored for multifunctionality
journal, June 2021

  • Fiedler, Sebastian; Monteiro, José A. F.; Hulvey, Kristin B.
  • Journal of Applied Ecology, Vol. 58, Issue 8
  • DOI: 10.1111/1365-2664.13900

Global trait–environment relationships of plant communities
journal, November 2018

  • Bruelheide, Helge; Dengler, Jürgen; Purschke, Oliver
  • Nature Ecology & Evolution, Vol. 2, Issue 12
  • DOI: 10.1038/s41559-018-0699-8

Functional Complexity and Ecosystem Stability
journal, December 1980

  • Voris, Peter Van; O'Neill, Robert V.; Emanuel, William R.
  • Ecology, Vol. 61, Issue 6
  • DOI: 10.2307/1939044

Pattern and Process in the Plant Community
journal, December 1947

  • Watt, Alex S.
  • The Journal of Ecology, Vol. 35, Issue 1/2
  • DOI: 10.2307/2256497

Long-term dynamics of pine and hardwood litter in contrasting environments: toward a global model of decomposition
journal, October 2000


Experimental tests of the roles of adaptation, chance, and history in evolution
journal, January 1995


Are belowground clonal traits good predictors of ecosystem functioning in temperate grasslands?
journal, January 2021

  • Klimešová, Jitka; Mudrák, Ondřej; Martínková, Jana
  • Functional Ecology, Vol. 35, Issue 3
  • DOI: 10.1111/1365-2435.13755

Biological Communities as Functionally Organized Units
journal, October 1997


The Scales That Limit: The Physical Boundaries of Evolution
journal, August 2019

  • Kempes, Christopher P.; Koehl, M. A. R.; West, Geoffrey B.
  • Frontiers in Ecology and Evolution, Vol. 7
  • DOI: 10.3389/fevo.2019.00242

Litter quality versus soil microbial community controls over decomposition: a quantitative analysis
journal, September 2013


A decision tree conceptualization of choice of knowledge transfer mechanism: the views of software development specialists in a multinational company
journal, February 2014

  • M. Jasimuddin, Sajjad; Connell, Con; H. Klein, Jonathan
  • Journal of Knowledge Management, Vol. 18, Issue 1
  • DOI: 10.1108/JKM-05-2013-0195

Plant functional traits and the multidimensional nature of species coexistence
journal, January 2015

  • Kraft, Nathan J. B.; Godoy, Oscar; Levine, Jonathan M.
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 3
  • DOI: 10.1073/pnas.1413650112

A framework for community and ecosystem genetics: from genes to ecosystems
journal, July 2006

  • Whitham, Thomas G.; Bailey, Joseph K.; Schweitzer, Jennifer A.
  • Nature Reviews Genetics, Vol. 7, Issue 7
  • DOI: 10.1038/nrg1877

Inhibitory interactions promote frequent bistability among competing bacteria
journal, April 2016

  • Wright, Erik S.; Vetsigian, Kalin H.
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms11274

Coordinated resource allocation to plant growth–defense tradeoffs
journal, October 2021

  • Monson, Russell K.; Trowbridge, Amy M.; Lindroth, Richard L.
  • New Phytologist, Vol. 233, Issue 3
  • DOI: 10.1111/nph.17773

Trait-based filtering mediates the effects of realistic biodiversity losses on ecosystem functioning
journal, June 2021

  • Wolf, Amelia A.; Funk, Jennifer L.; Selmants, Paul C.
  • Proceedings of the National Academy of Sciences, Vol. 118, Issue 26
  • DOI: 10.1073/pnas.2022757118

Effects of plant community history, soil legacy and plant diversity on soil microbial communities
journal, June 2021

  • Schmid, Marc W.; van Moorsel, Sofia J.; Hahl, Terhi
  • Journal of Ecology, Vol. 109, Issue 8
  • DOI: 10.1111/1365-2745.13714

A Darwinian Approach to Plant Ecology
journal, July 1967

  • Harper, J. L.
  • The Journal of Ecology, Vol. 55, Issue 2
  • DOI: 10.2307/2257876

Community-level signatures of ecological succession in natural bacterial communities
journal, May 2020


A unified theory for organic matter accumulation
journal, February 2021

  • Zakem, Emily J.; Cael, B. B.; Levine, Naomi M.
  • Proceedings of the National Academy of Sciences, Vol. 118, Issue 6
  • DOI: 10.1073/pnas.2016896118

A Hierarchical Model for Decomposition in Terrestrial Ecosystems: Application to Soils of the Humid Tropics
journal, June 1993

  • Lavelle, Patrick; Blanchart, Eric; Martin, Agnes
  • Biotropica, Vol. 25, Issue 2
  • DOI: 10.2307/2389178

Microbiome functioning depends on individual and interactive effects of the environment and community structure
journal, July 2018


Priority effects and the macroevolutionary dynamics of biodiversity
journal, May 2021

  • Reijenga, Bouwe R.; Murrell, David J.; Pigot, Alex L.
  • Ecology Letters, Vol. 24, Issue 7
  • DOI: 10.1111/ele.13766

A test of the hierarchical model of litter decomposition
journal, November 2017


Daymet: Daily Surface Weather Data on a 1-km Grid for North America, Version 4
collection, January 2020

  • Thornton, M. M.; Shrestha, R.; Wei, Y.
  • ORNL Distributed Active Archive Center
  • DOI: 10.3334/ORNLDAAC/1840