Neural network assisted analysis of bimetallic nanocatalysts using X-ray absorption near edge structure spectroscopy
Abstract
X-ray absorption spectroscopy is a common method for probing the local structure of nanocatalysts. One portion of the X-ray absorption spectrum, the X-ray absorption near edge structure (XANES) is a useful alternative to the commonly used extended X-ray absorption fine structure (EXAFS) for probing three-dimensional geometry around each type of atomic species, especially in those cases when the EXAFS data quality is limited by harsh reaction conditions and low metal loading. A methodology for quantitative determination of bimetallic architectures from their XANES spectra is currently lacking. In this work, we have developed a method, based on the artificial neural network, trained on ab initio site-specific XANES calculations, that enables accurate and rapid reconstruction of the structural descriptors (partial coordination numbers) from the experimental XANES data. We demonstrate the utility of this method on the example of a series of PdAu bimetallic nanoalloys. By validating the neural network-yielded metal–metal coordination numbers based on the XANES analysis by previous EXAFS characterization, we obtained new results for in situ restructuring of dilute (2.6 at% Pd in Au) PdAu nanoparticles, driven by their gas and temperature treatments.
- Authors:
-
- Stony Brook Univ., NY (United States)
- Harvard Univ., Cambridge, MA (United States)
- Harvard Univ., Cambridge, MA (United States). Wyss Inst. for Biologically Inspired Engineering
- Stony Brook Univ., NY (United States); Brookhaven National Lab. (BNL), Upton, NY (United States)
- Publication Date:
- Research Org.:
- Brookhaven National Laboratory (BNL), Upton, NY (United States); Harvard Univ., Cambridge, MA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Basic Energy Sciences (BES)
- OSTI Identifier:
- 1677655
- Alternate Identifier(s):
- OSTI ID: 1618142; OSTI ID: 1845278
- Report Number(s):
- BNL-219947-2020-JAAM
Journal ID: ISSN 1463-9076
- Grant/Contract Number:
- SC0012704; SC9912573; AC02-06CH11357; AC02-76SF00515; SC0012573
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Physical Chemistry Chemical Physics. PCCP
- Additional Journal Information:
- Journal Volume: 22; Journal Issue: 34; Journal ID: ISSN 1463-9076
- Publisher:
- Royal Society of Chemistry
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 37 INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY
Citation Formats
Marcella, Nicholas, Liu, Yang, Timoshenko, Janis, Guan, Erjia, Luneau, Mathilde, Shirman, Tanya, Plonka, Anna M., van der Hoeven, Jessi S., Aizenberg, Joanna, Friend, Cynthia M., and Frenkel, Anatoly I. Neural network assisted analysis of bimetallic nanocatalysts using X-ray absorption near edge structure spectroscopy. United States: N. p., 2020.
Web. doi:10.1039/d0cp02098b.
Marcella, Nicholas, Liu, Yang, Timoshenko, Janis, Guan, Erjia, Luneau, Mathilde, Shirman, Tanya, Plonka, Anna M., van der Hoeven, Jessi S., Aizenberg, Joanna, Friend, Cynthia M., & Frenkel, Anatoly I. Neural network assisted analysis of bimetallic nanocatalysts using X-ray absorption near edge structure spectroscopy. United States. https://doi.org/10.1039/d0cp02098b
Marcella, Nicholas, Liu, Yang, Timoshenko, Janis, Guan, Erjia, Luneau, Mathilde, Shirman, Tanya, Plonka, Anna M., van der Hoeven, Jessi S., Aizenberg, Joanna, Friend, Cynthia M., and Frenkel, Anatoly I. Fri .
"Neural network assisted analysis of bimetallic nanocatalysts using X-ray absorption near edge structure spectroscopy". United States. https://doi.org/10.1039/d0cp02098b. https://www.osti.gov/servlets/purl/1677655.
@article{osti_1677655,
title = {Neural network assisted analysis of bimetallic nanocatalysts using X-ray absorption near edge structure spectroscopy},
author = {Marcella, Nicholas and Liu, Yang and Timoshenko, Janis and Guan, Erjia and Luneau, Mathilde and Shirman, Tanya and Plonka, Anna M. and van der Hoeven, Jessi S. and Aizenberg, Joanna and Friend, Cynthia M. and Frenkel, Anatoly I.},
abstractNote = {X-ray absorption spectroscopy is a common method for probing the local structure of nanocatalysts. One portion of the X-ray absorption spectrum, the X-ray absorption near edge structure (XANES) is a useful alternative to the commonly used extended X-ray absorption fine structure (EXAFS) for probing three-dimensional geometry around each type of atomic species, especially in those cases when the EXAFS data quality is limited by harsh reaction conditions and low metal loading. A methodology for quantitative determination of bimetallic architectures from their XANES spectra is currently lacking. In this work, we have developed a method, based on the artificial neural network, trained on ab initio site-specific XANES calculations, that enables accurate and rapid reconstruction of the structural descriptors (partial coordination numbers) from the experimental XANES data. We demonstrate the utility of this method on the example of a series of PdAu bimetallic nanoalloys. By validating the neural network-yielded metal–metal coordination numbers based on the XANES analysis by previous EXAFS characterization, we obtained new results for in situ restructuring of dilute (2.6 at% Pd in Au) PdAu nanoparticles, driven by their gas and temperature treatments.},
doi = {10.1039/d0cp02098b},
journal = {Physical Chemistry Chemical Physics. PCCP},
number = 34,
volume = 22,
place = {United States},
year = {Fri May 01 00:00:00 EDT 2020},
month = {Fri May 01 00:00:00 EDT 2020}
}
Works referenced in this record:
Pd–Au bimetallic catalysts: understanding alloy effects from planar models and (supported) nanoparticles
journal, January 2012
- Gao, Feng; Goodman, D. Wayne
- Chemical Society Reviews, Vol. 41, Issue 24
Importance of electronic ligand effects in metal alloy catalysts
journal, January 1982
- Burch, Robert
- Accounts of Chemical Research, Vol. 15, Issue 1
Synthesis, catalysis, surface chemistry and structure of bimetallic nanocatalysts
journal, January 2012
- Tao, Franklin (Feng)
- Chemical Society Reviews, Vol. 41, Issue 24
Ligand and ensemble effects in adsorption on alloy surfaces
journal, January 2001
- Liu, P.; Nørskov, J. K.
- Physical Chemistry Chemical Physics, Vol. 3, Issue 17
Machine-Learning Methods Enable Exhaustive Searches for Active Bimetallic Facets and Reveal Active Site Motifs for CO 2 Reduction
journal, August 2017
- Ulissi, Zachary W.; Tang, Michael T.; Xiao, Jianping
- ACS Catalysis, Vol. 7, Issue 10
Complex structural dynamics of nanocatalysts revealed in Operando conditions by correlated imaging and spectroscopy probes
journal, June 2015
- Li, Y.; Zakharov, D.; Zhao, S.
- Nature Communications, Vol. 6, Issue 1
Structural Characterization of Carbon-Supported Platinum−Ruthenium Nanoparticles from the Molecular Cluster Precursor PtRu 5 C(CO) 16
journal, August 1997
- Nashner, Michael S.; Frenkel, Anatoly I.; Adler, David L.
- Journal of the American Chemical Society, Vol. 119, Issue 33
Noncrystalline-to-Crystalline Transformations in Pt Nanoparticles
journal, August 2013
- Li, Long; Wang, Lin-Lin; Johnson, Duane D.
- Journal of the American Chemical Society, Vol. 135, Issue 35
Evolution of Structure and Chemistry of Bimetallic Nanoparticle Catalysts under Reaction Conditions
journal, June 2010
- Tao, Feng; Grass, Michael E.; Zhang, Yawen
- Journal of the American Chemical Society, Vol. 132, Issue 25
Reaction-Driven Restructuring of Rh-Pd and Pt-Pd Core-Shell Nanoparticles
journal, November 2008
- Tao, F.; Grass, M. E.; Zhang, Y.
- Science, Vol. 322, Issue 5903
Revealing the Atomic Restructuring of Pt–Co Nanoparticles
journal, May 2014
- Xin, Huolin L.; Alayoglu, Selim; Tao, Runzhe
- Nano Letters, Vol. 14, Issue 6
Critical review: Effects of complex interactions on structure and dynamics of supported metal catalysts
journal, March 2014
- Frenkel, Anatoly I.; Cason, Michael W.; Elsen, Annika
- Journal of Vacuum Science & Technology A: Vacuum, Surfaces, and Films, Vol. 32, Issue 2
Applications of extended X-ray absorption fine-structure spectroscopy to studies of bimetallic nanoparticle catalysts
journal, January 2012
- Frenkel, Anatoly I.
- Chemical Society Reviews, Vol. 41, Issue 24
Probing the Limits of Conventional Extended X-ray Absorption Fine Structure Analysis Using Thiolated Gold Nanoparticles
journal, February 2015
- Chill, Samuel T.; Anderson, Rachel M.; Yancey, David F.
- ACS Nano, Vol. 9, Issue 4
Solving the Structure and Dynamics of Metal Nanoparticles by Combining X-Ray Absorption Fine Structure Spectroscopy and Atomistic Structure Simulations
journal, June 2019
- Timoshenko, J.; Duan, Z.; Henkelman, G.
- Annual Review of Analytical Chemistry, Vol. 12, Issue 1
Parameter-free calculations of X-ray spectra with FEFF9
journal, January 2010
- Rehr, John J.; Kas, Joshua J.; Vila, Fernando D.
- Physical Chemistry Chemical Physics, Vol. 12, Issue 21
X-ray-absorption spectroscopy and n -body distribution functions in condensed matter. I. Theory
journal, December 1995
- Filipponi, Adriano; Di Cicco, Andrea; Natoli, Calogero Renzo
- Physical Review B, Vol. 52, Issue 21
MXAN : a new software procedure to perform geometrical fitting of experimental XANES spectra
journal, March 2001
- Benfatto, M.; Congiu-Castellano, A.; Daniele, A.
- Journal of Synchrotron Radiation, Vol. 8, Issue 2
FitIt: New software to extract structural information on the basis of XANES fitting
journal, May 2007
- Smolentsev, G.; Soldatov, A. V.
- Computational Materials Science, Vol. 39, Issue 3
“Inverting” X-ray Absorption Spectra of Catalysts by Machine Learning in Search for Activity Descriptors
journal, September 2019
- Timoshenko, Janis; Frenkel, Anatoly I.
- ACS Catalysis, Vol. 9, Issue 11
Probing Atomic Distributions in Mono- and Bimetallic Nanoparticles by Supervised Machine Learning
journal, December 2018
- Timoshenko, Janis; Wrasman, Cody J.; Luneau, Mathilde
- Nano Letters, Vol. 19, Issue 1
Neural Network Approach for Characterizing Structural Transformations by X-Ray Absorption Fine Structure Spectroscopy
journal, May 2018
- Timoshenko, Janis; Anspoks, Andris; Cintins, Arturs
- Physical Review Letters, Vol. 120, Issue 22
Supervised Machine-Learning-Based Determination of Three-Dimensional Structure of Metallic Nanoparticles
journal, October 2017
- Timoshenko, Janis; Lu, Deyu; Lin, Yuewei
- The Journal of Physical Chemistry Letters, Vol. 8, Issue 20
Application of the ratio method of EXAFS analysis to disordered systems
journal, April 1983
- Bunker, Grant
- Nuclear Instruments and Methods in Physics Research, Vol. 207, Issue 3
Solving the structure of nanoparticles by multiple-scattering EXAFS analysis
journal, May 1999
- Frenkel, A. I.
- Journal of Synchrotron Radiation, Vol. 6, Issue 3
Estimation of mean size and shape of small metal particles by EXAFS
journal, January 1999
- Jentys, Andreas
- Physical Chemistry Chemical Physics, Vol. 1, Issue 17
In situ coarsening study of inverse micelle-prepared Pt nanoparticles supported on γ-Al2O3: pretreatment and environmental effects
journal, January 2012
- Matos, J.; Ono, L. K.; Behafarid, F.
- Physical Chemistry Chemical Physics, Vol. 14, Issue 32
Tuning the Structure of Pt Nanoparticles through Support Interactions: An in Situ Polarized X-ray Absorption Study Coupled with Atomistic Simulations
journal, March 2019
- Ahmadi, M.; Timoshenko, J.; Behafarid, F.
- The Journal of Physical Chemistry C, Vol. 123, Issue 16
Subnanometer Substructures in Nanoassemblies Formed from Clusters under a Reactive Atmosphere Revealed Using Machine Learning
journal, August 2018
- Timoshenko, Janis; Halder, Avik; Yang, Bing
- The Journal of Physical Chemistry C, Vol. 122, Issue 37
Cluster Assemblies Produced by Aggregation of Preformed Ag Clusters in Ionic Liquids
journal, March 2018
- Roese, Stefanie; Kononov, Alexander; Timoshenko, Janis
- Langmuir, Vol. 34, Issue 16
Mapping XANES spectra on structural descriptors of copper oxide clusters using supervised machine learning
journal, October 2019
- Liu, Yang; Marcella, Nicholas; Timoshenko, Janis
- The Journal of Chemical Physics, Vol. 151, Issue 16
Aqueous Au-Pd colloids catalyze selective CH 4 oxidation to CH 3 OH with O 2 under mild conditions
journal, September 2017
- Agarwal, Nishtha; Freakley, Simon J.; McVicker, Rebecca U.
- Science, Vol. 358, Issue 6360
Bimetallic dendrimer-encapsulated nanoparticles as catalysts: a review of the research advances
journal, January 2008
- Peng, Xiaohong; Pan, Qinmin; Rempel, Garry L.
- Chemical Society Reviews, Vol. 37, Issue 8
Achieving High Selectivity for Alkyne Hydrogenation at High Conversions with Compositionally Optimized PdAu Nanoparticle Catalysts in Raspberry Colloid-Templated SiO 2
journal, November 2019
- Luneau, Mathilde; Shirman, Tanya; Foucher, Alexandre C.
- ACS Catalysis, Vol. 10, Issue 1
Palladium–gold single atom alloy catalysts for liquid phase selective hydrogenation of 1-hexyne
journal, January 2017
- Liu, Jilei; Shan, Junjun; Lucci, Felicia R.
- Catalysis Science & Technology, Vol. 7, Issue 19
Dilute Pd/Au Alloy Nanoparticles Embedded in Colloid-Templated Porous SiO 2 : Stable Au-Based Oxidation Catalysts
journal, July 2019
- Luneau, Mathilde; Shirman, Tanya; Filie, Amanda
- Chemistry of Materials, Vol. 31, Issue 15
Effects of Pd on Catalysis by Au: CO Adsorption, CO Oxidation, and Cyclohexene Hydrogenation by Supported Au and Pd–Au Catalysts
journal, October 2013
- Ward, Timothy; Delannoy, Laurent; Hahn, Ruth
- ACS Catalysis, Vol. 3, Issue 11
Core Shell Inversion during Nucleation and Growth of Bimetallic Pt/Ru Nanoparticles
journal, August 1998
- Nashner, Michael S.; Frenkel, Anatoly I.; Somerville, David
- Journal of the American Chemical Society, Vol. 120, Issue 32
Structural Rearrangement of Bimetallic Alloy PdAu Nanoparticles within Dendrimer Templates to Yield Core/Shell Configurations †
journal, February 2008
- Knecht, Marc R.; Weir, Michael G.; Frenkel, Anatoly I.
- Chemistry of Materials, Vol. 20, Issue 3
Solving the 3D structure of metal nanoparticles
journal, January 2007
- Frenkel, Anatoly
- Zeitschrift für Kristallographie - Crystalline Materials, Vol. 222, Issue 11/2007
Short range order in bimetallic nanoalloys: An extended X-ray absorption fine structure study
journal, February 2013
- Frenkel, Anatoly I.; Wang, Qi; Sanchez, Sergio I.
- The Journal of Chemical Physics, Vol. 138, Issue 6
Deep Learning of Atomically Resolved Scanning Transmission Electron Microscopy Images: Chemical Identification and Tracking Local Transformations
journal, October 2016
- Ziatdinov, Maxim; Dyck, Ondrej; Maksov, Artem
- ACS Nano, Vol. 11, Issue 12
A Deep Learning Approach to Identify Local Structures in Atomic-Resolution Transmission Electron Microscopy Images
journal, July 2018
- Madsen, Jacob; Liu, Pei; Kling, Jens
- Advanced Theory and Simulations, Vol. 1, Issue 8
Ab Initio Quality NMR Parameters in Solid-State Materials Using a High-Dimensional Neural-Network Representation
journal, January 2016
- Cuny, Jérôme; Xie, Yu; Pickard, Chris J.
- Journal of Chemical Theory and Computation, Vol. 12, Issue 2
Identifying the Atomic-Level Effects of Metal Composition on the Structure and Catalytic Activity of Peptide-Templated Materials
journal, October 2015
- Merrill, Nicholas A.; McKee, Erik M.; Merino, Kyle C.
- ACS Nano, Vol. 9, Issue 12
Modular Design of Advanced Catalytic Materials Using Hybrid Organic-Inorganic Raspberry Particles
journal, December 2017
- Shirman, Elijah; Shirman, Tanya; Shneidman, Anna V.
- Advanced Functional Materials, Vol. 28, Issue 27
New Role of Pd Hydride as a Sensor of Surface Pd Distributions in Pd−Au Catalysts
journal, December 2019
- Guan, Erjia; Foucher, Alexandre C.; Marcella, Nicholas
- ChemCatChem, Vol. 12, Issue 3
Enhancing catalytic performance of dilute metal alloy nanomaterials
journal, April 2020
- Luneau, Mathilde; Guan, Erjia; Chen, Wei
- Communications Chemistry, Vol. 3, Issue 1
Structure of the methanol synthesis catalyst determined by in situHERFD XAS and EXAFS
journal, January 2012
- Kleymenov, Evgeny; Sa, Jacinto; Abu-Dahrieh, Jehad
- Catal. Sci. Technol., Vol. 2, Issue 2
The Nuclearity of the Active Site for Methane to Methanol Conversion in Cu-Mordenite: A Quantitative Assessment
journal, October 2018
- Pappas, Dimitrios K.; Martini, Andrea; Dyballa, Michael
- Journal of the American Chemical Society, Vol. 140, Issue 45
Linking the evolution of catalytic properties and structural changes in copper–zinc nanocatalysts using operando EXAFS and neural-networks
journal, January 2020
- Timoshenko, Janis; Jeon, Hyo Sang; Sinev, Ilya
- Chemical Science, Vol. 11, Issue 14