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Title: Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems

Abstract

The genomes of the aerobic methanotrophs “Methyloterricola oryzae” strain 73aT and Methylomagnum ishizawai strain 175 were sequenced. Both strains were isolated from rice plants. Methyloterricola oryzae strain 73aT represents the first isolate of rice paddy cluster I, and strain 175 is the second representative of the recently described genus Methylomagnum.

Authors:
 [1];  [2];  [3];  [4];  [5];  [6]; ORCiD logo [7];  [8];  [5];  [9];  [10];  [11];  [12];  [13];  [14];  [6];  [2];  [11];  [1]
+ Show Author Affiliations
  1. Univ. of Bonn (Germany). Institute of Crop Science and Resource Conservation—Molecular Biology of the Rhizosphere
  2. San Diego State Univ., CA (United States)
  3. Université de Strasbourg (France). Dept. of Microbiology, Genomics and the Environment
  4. Univ. of Calgary, AB (Canada). Dept. of Biological Sciences
  5. Radboud Univ., Nijmegen (Netherlands). Faculty of Science. Dept. of Microbiology
  6. Russian Academy of Sciences (RAS), Pushchino (Russian Federation). G.K. Skryabin Inst. of Biochemistry and Physiology of Microorganisms
  7. City Univ. of New York (CUNY), NY (United States). Queens College. Division of Mathematics and Natural Sciences
  8. Univ. of East Anglia, Norwich (United Kingdom). School of Environmental Sciences
  9. Kyoto Univ. (Japan). Graduate School of Agriculture. Division of Applied Life Sciences
  10. Univ. of Michigan, Ann Arbor, MI (United States). Dept. of Civil and Environmental Engineering
  11. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  12. Iowa State Univ., Ames, IA (United States). Roy J. Carver Dept. of Biochemistry, Biophysics and Molecular Biology
  13. Univ. of Alberta, Edmonton, AB (Canada). Dept. of Biological Sciences
  14. The Arctic Univ. of Norway, Tromsø (Norway). Dept. of Arctic and Marine Biology. UiT
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
OSTI Identifier:
1629641
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 5; Journal Issue: 33; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Frindte, Katharina, Kalyuzhnaya, Marina G., Bringel, Françoise, Dunfield, Peter F., Jetten, Mike S. M., Khmelenina, Valentina N., Klotz, Martin G., Murrell, J. Colin, Op den Camp, Huub J. M., Sakai, Yasuyoshi, Semrau, Jeremy D., Shapiro, Nicole, DiSpirito, Alan A., Stein, Lisa Y., Svenning, Mette M., Trotsenko, Yuri A., Vuilleumier, Stéphane, Woyke, Tanja, and Knief, Claudia. Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems. United States: N. p., 2017. Web. doi:10.1128/genomeA.00526-17.
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Frindte, Katharina, Kalyuzhnaya, Marina G., Bringel, Françoise, Dunfield, Peter F., Jetten, Mike S. M., Khmelenina, Valentina N., Klotz, Martin G., Murrell, J. Colin, Op den Camp, Huub J. M., Sakai, Yasuyoshi, Semrau, Jeremy D., Shapiro, Nicole, DiSpirito, Alan A., Stein, Lisa Y., Svenning, Mette M., Trotsenko, Yuri A., Vuilleumier, Stéphane, Woyke, Tanja, & Knief, Claudia. Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems. United States. https://doi.org/10.1128/genomeA.00526-17
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Frindte, Katharina, Kalyuzhnaya, Marina G., Bringel, Françoise, Dunfield, Peter F., Jetten, Mike S. M., Khmelenina, Valentina N., Klotz, Martin G., Murrell, J. Colin, Op den Camp, Huub J. M., Sakai, Yasuyoshi, Semrau, Jeremy D., Shapiro, Nicole, DiSpirito, Alan A., Stein, Lisa Y., Svenning, Mette M., Trotsenko, Yuri A., Vuilleumier, Stéphane, Woyke, Tanja, and Knief, Claudia. Thu . "Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems". United States. https://doi.org/10.1128/genomeA.00526-17. https://www.osti.gov/servlets/purl/1629641.
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@article{osti_1629641,
title = {Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems},
author = {Frindte, Katharina and Kalyuzhnaya, Marina G. and Bringel, Françoise and Dunfield, Peter F. and Jetten, Mike S. M. and Khmelenina, Valentina N. and Klotz, Martin G. and Murrell, J. Colin and Op den Camp, Huub J. M. and Sakai, Yasuyoshi and Semrau, Jeremy D. and Shapiro, Nicole and DiSpirito, Alan A. and Stein, Lisa Y. and Svenning, Mette M. and Trotsenko, Yuri A. and Vuilleumier, Stéphane and Woyke, Tanja and Knief, Claudia},
abstractNote = {The genomes of the aerobic methanotrophs “Methyloterricola oryzae” strain 73aT and Methylomagnum ishizawai strain 175 were sequenced. Both strains were isolated from rice plants. Methyloterricola oryzae strain 73aT represents the first isolate of rice paddy cluster I, and strain 175 is the second representative of the recently described genus Methylomagnum.},
doi = {10.1128/genomeA.00526-17},
journal = {Genome Announcements},
number = 33,
volume = 5,
place = {United States},
year = {Thu Aug 17 00:00:00 EDT 2017},
month = {Thu Aug 17 00:00:00 EDT 2017}
}
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https://doi.org/10.1128/genomeA.00526-17
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Works referenced in this record:

Cyclic, alternating methane and nitrogen limitation increases PHB production in a methanotrophic community
journal, March 2012

A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs: Novel monooxygenase in Gamma-MOB
journal, February 2011

Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Lake Washington Sediment: TABLE 1 
journal, March 2015

  • Kalyuzhnaya, Marina G.; Lamb, Andrew E.; McTaggart, Tami L.
  • Genome Announcements, Vol. 3, Issue 2
  • DOI: 10.1128/genomeA.00103-15

Draft Genomes of Gammaproteobacterial Methanotrophs Isolated from Terrestrial Ecosystems: TABLE 1
journal, June 2015

  • Hamilton, Richard; Kits, K. Dimitri; Ramonovskaya, Victoria A.
  • Genome Announcements, Vol. 3, Issue 3
  • DOI: 10.1128/genomeA.00515-15

Methylomagnum ishizawai gen. nov., sp. nov., a mesophilic type I methanotroph isolated from rice rhizosphere
journal, October 2015

  • Khalifa, Ashraf; Dianou, Dayéri; Ueno, Chihoko
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue 10
  • DOI: 10.1099/ijsem.0.000451

Cofactor-dependent pathways of formaldehyde oxidation in methylotrophic bacteria
journal, October 2002

Biogeography of wetland rice methanotrophs: Biogeography of wetland rice methanotrophs
journal, December 2009

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    Works referencing / citing this record:

    Characterization of the first rice paddy cluster I isolate, Methyloterricola oryzae gen. nov., sp. nov. and amended description of Methylomagnum ishizawai
    journal, November 2017

    • Frindte, Katharina; Maarastawi, Sarah A.; Lipski, André
    • International Journal of Systematic and Evolutionary Microbiology, Vol. 67, Issue 11
    • DOI: 10.1099/ijsem.0.002319
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