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Title: Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis

Abstract

Frankia forms a nitrogen-fixing symbiosis with actinorhizal plants. We report a draft genome sequence for Frankia sp. strain BCU110501, a nitrogen-fixing actinobacterium isolated from nodules of Discaria trinevis grown in the Patagonia region of Argentina.

Authors:
 [1];  [2];  [3];  [4];  [5];  [3];  [2];  [6];  [3];  [6];  [3];  [7];  [7];  [7];  [7];  [7];  [7];  [7];  [7];  [3] more »;  [8];  [7];  [7];  [7];  [9];  [9];  [7];  [9];  [3];  [7];  [2] « less
+ Show Author Affiliations
  1. University of Quilmes, Bernal (Argentina)
  2. Univ. of New Hampshire, Durham, NH (United States)
  3. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  4. Centro Regional Universitario, Bariloche (Argentina)
  5. Department of Energy (DOE) Joint Genome Institute, Walnut Creek, California, USA
  6. Univ. of New Hampshire, Durham, NH (United States); University of Tunis–El Manar, Tunis (Tunisia)
  7. USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
  8. University of Tunis–El Manar, Tunis (Tunisia)
  9. University of North Bengal, Siliguri (India)
Publication Date:
Research Org.:
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States); USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; USDA; National Institute of Food and Agriculture (NIFA)
OSTI Identifier:
1629084
Grant/Contract Number:  
AC02-05CH11231; 2010-65108-20581; NH530
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 1; Journal Issue: 4; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Wall, Luis G., Beauchemin, Nicholas, Cantor, Michael N., Chaia, Eugenia, Chen, Amy, Detter, J. Chris, Furnholm, Teal, Ghodhbane-Gtari, Faten, Goodwin, Lynne, Gtari, Maher, Han, Cliff, Han, James, Huntemann, Marcel, Hua, Susan Xinyu, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Mikhailova, Natalia, Nordberg, Henrik P., Nouioui, Imen, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Sen, Arnab, Sur, Saubashya, Szeto, Ernest, Thakur, Subarna, Wei, Chia-Lin, Woyke, Tanja, and Tisa, Louis S. Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis. United States: N. p., 2013. Web. doi:10.1128/genomea.00503-13.
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Wall, Luis G., Beauchemin, Nicholas, Cantor, Michael N., Chaia, Eugenia, Chen, Amy, Detter, J. Chris, Furnholm, Teal, Ghodhbane-Gtari, Faten, Goodwin, Lynne, Gtari, Maher, Han, Cliff, Han, James, Huntemann, Marcel, Hua, Susan Xinyu, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Mikhailova, Natalia, Nordberg, Henrik P., Nouioui, Imen, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Sen, Arnab, Sur, Saubashya, Szeto, Ernest, Thakur, Subarna, Wei, Chia-Lin, Woyke, Tanja, & Tisa, Louis S. Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis. United States. https://doi.org/10.1128/genomea.00503-13
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Wall, Luis G., Beauchemin, Nicholas, Cantor, Michael N., Chaia, Eugenia, Chen, Amy, Detter, J. Chris, Furnholm, Teal, Ghodhbane-Gtari, Faten, Goodwin, Lynne, Gtari, Maher, Han, Cliff, Han, James, Huntemann, Marcel, Hua, Susan Xinyu, Ivanova, Natalia, Kyrpides, Nikos, Markowitz, Victor, Mavrommatis, Kostas, Mikhailova, Natalia, Nordberg, Henrik P., Nouioui, Imen, Ovchinnikova, Galina, Pagani, Ioanna, Pati, Amrita, Sen, Arnab, Sur, Saubashya, Szeto, Ernest, Thakur, Subarna, Wei, Chia-Lin, Woyke, Tanja, and Tisa, Louis S. Thu . "Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis". United States. https://doi.org/10.1128/genomea.00503-13. https://www.osti.gov/servlets/purl/1629084.
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@article{osti_1629084,
title = {Draft Genome Sequence of Frankia sp. Strain BCU110501, a Nitrogen-Fixing Actinobacterium Isolated from Nodules of Discaria trinevis},
author = {Wall, Luis G. and Beauchemin, Nicholas and Cantor, Michael N. and Chaia, Eugenia and Chen, Amy and Detter, J. Chris and Furnholm, Teal and Ghodhbane-Gtari, Faten and Goodwin, Lynne and Gtari, Maher and Han, Cliff and Han, James and Huntemann, Marcel and Hua, Susan Xinyu and Ivanova, Natalia and Kyrpides, Nikos and Markowitz, Victor and Mavrommatis, Kostas and Mikhailova, Natalia and Nordberg, Henrik P. and Nouioui, Imen and Ovchinnikova, Galina and Pagani, Ioanna and Pati, Amrita and Sen, Arnab and Sur, Saubashya and Szeto, Ernest and Thakur, Subarna and Wei, Chia-Lin and Woyke, Tanja and Tisa, Louis S.},
abstractNote = {Frankia forms a nitrogen-fixing symbiosis with actinorhizal plants. We report a draft genome sequence for Frankia sp. strain BCU110501, a nitrogen-fixing actinobacterium isolated from nodules of Discaria trinevis grown in the Patagonia region of Argentina.},
doi = {10.1128/genomea.00503-13},
journal = {Genome Announcements},
number = 4,
volume = 1,
place = {United States},
year = {Thu Jul 11 00:00:00 EDT 2013},
month = {Thu Jul 11 00:00:00 EDT 2013}
}
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Publisher's Version of Record
https://doi.org/10.1128/genomea.00503-13
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Works referenced in this record:

Biology of Frankia strains, actinomycete symbionts of actinorhizal plants
journal, June 1993

Advances in Actinorhizal Symbiosis: Host Plant- Frankia Interactions, Biology, and Applications in Arid Land Reclamation. A Review
journal, January 2001

Life in soil by the actinorhizal root nodule endophyte Frankia. A review
journal, September 2010

Molecular Phylogeny of the Genus Frankia and Related Genera and Emendation of the Family Frankiaceae
journal, January 1996

  • Normand, P.; Orso, S.; Cournoyer, B.
  • International Journal of Systematic Bacteriology, Vol. 46, Issue 1
  • DOI: 10.1099/00207713-46-1-1

Phylogeny of members of the Frankia genus based on gyrB, nifH and glnII sequences
journal, June 2011

  • Nouioui, Imen; Ghodhbane-Gtari, Faten; Beauchemin, Nicholas J.
  • Antonie van Leeuwenhoek, Vol. 100, Issue 4
  • DOI: 10.1007/s10482-011-9613-y

16S–23S rRNA Intergenic Spacer Region Variability in the Genus Frankia
journal, February 2010

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
journal, December 2006

  • Normand, P.; Lapierre, P.; Tisa, L. S.
  • Genome Research, Vol. 17, Issue 1
  • DOI: 10.1101/gr.5798407

Exploring the genomes of Frankia
journal, July 2007

Draft Genome Sequence of Frankia sp. Strain CN3, an Atypical, Noninfective (Nod-) Ineffective (Fix-) Isolate from Coriaria nepalensis
journal, February 2013

Draft Genome Sequence of Frankia sp. Strain QA3, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Alnus nitida
journal, February 2013

Isolation of an effective strain of Frankia from nodules of Discaria trinervis (Rhamnaceae)
journal, January 1998

Infectivity variation of Discaria trinervis-nodulating Frankia in Patagonian soil according to season and storage conditions
journal, July 2007

Analysis of nodulation kinetics in FrankiaDiscaria trinervis symbiosis reveals different factors involved in the nodulation process
journal, August 2008

Phosphorus and the regulation of nodulation in the actinorhizal symbiosis between Discaria trinervis (Rhamnaceae) and Frankia BCU110501
journal, January 2002

Time course of nodule development in the Discaria trinervis (Rhamnaceae) – Frankia symbiosis
journal, February 1999

Effects of calcium in the nitrogen-fixing symbiosis between actinorhizal Discaria trinervis (Rhamnaceae) and Frankia
journal, December 2009

Solexa Ltd
journal, June 2004

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008

High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010

  • Gnerre, S.; MacCallum, I.; Przybylski, D.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
  • DOI: 10.1073/pnas.1017351108

16S–23S rRNA Intergenic Spacer Region Variability in the Genus Frankia
journal, February 2010

Phylogeny of members of the Frankia genus based on gyrB, nifH and glnII sequences
journal, June 2011

  • Nouioui, Imen; Ghodhbane-Gtari, Faten; Beauchemin, Nicholas J.
  • Antonie van Leeuwenhoek, Vol. 100, Issue 4
  • DOI: 10.1007/s10482-011-9613-y

High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010

  • Gnerre, S.; MacCallum, I.; Przybylski, D.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
  • DOI: 10.1073/pnas.1017351108

Molecular Phylogeny of the Genus Frankia and Related Genera and Emendation of the Family Frankiaceae
journal, January 1996

  • Normand, P.; Orso, S.; Cournoyer, B.
  • International Journal of Systematic Bacteriology, Vol. 46, Issue 1
  • DOI: 10.1099/00207713-46-1-1

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
journal, December 2006

  • Normand, P.; Lapierre, P.; Tisa, L. S.
  • Genome Research, Vol. 17, Issue 1
  • DOI: 10.1101/gr.5798407

Analysis of nodulation kinetics in FrankiaDiscaria trinervis symbiosis reveals different factors involved in the nodulation process
journal, August 2008

Complete Genome Sequence of Bacteriophage EC6, Capable of Lysing Escherichia coli O157:H7
journal, February 2013

Draft Genome Sequence of Frankia sp. Strain BMG5.12, a Nitrogen-Fixing Actinobacterium Isolated from Tunisian Soils
journal, June 2013

Genome Sequence of "Candidatus Frankia datiscae" Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata
journal, November 2011

  • Persson, T.; Benson, D. R.; Normand, P.
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  • DOI: 10.1128/jb.06208-11

Biology of Frankia strains, actinomycete symbionts of actinorhizal plants
journal, June 1993

Solexa Ltd
journal, June 2004

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    Works referencing / citing this record:

    An update on the taxonomy of the genus Frankia Brunchorst, 1886, 174AL
    journal, September 2018

    Transcription factors network in root endosymbiosis establishment and development
    journal, February 2018

    • Diédhiou, Issa; Diouf, Diaga
    • World Journal of Microbiology and Biotechnology, Vol. 34, Issue 3
    • DOI: 10.1007/s11274-018-2418-7

    Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams
    journal, July 2019

    • Nguyen, Thanh Van; Wibberg, Daniel; Vigil-Stenman, Theoden
    • Genome Biology and Evolution, Vol. 11, Issue 8
    • DOI: 10.1093/gbe/evz153

    Molecular responses of Frankia sp. strain QA3 to naphthalene
    journal, April 2015

    • Baker, Ethan; Tang, Yang; Chu, Feixia
    • Canadian Journal of Microbiology, Vol. 61, Issue 4
    • DOI: 10.1139/cjm-2014-0786

    An assemblage of Frankia Cluster II strains from California contains the canonical nod genes and also the sulfotransferase gene nodH
    journal, October 2016

    Permanent Draft Genome Sequence of Frankia sp. Strain ACN1 ag , a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodules of Alnus glutinosa
    journal, December 2015

    The ins and outs of metal homeostasis by the root nodule actinobacterium Frankia
    journal, January 2014

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