An open science resource for establishing reliability and reproducibility in functional connectomics
Abstract
Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability to reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures are reported to have moderate to high test-retest reliability, the variability in data acquisition, experimental designs, and analytic methods precludes the ability to generalize results. The Consortium for Reliability and Reproducibility (CoRR) is working to address this challenge and establish test-retest reliability as a minimum standard for methods development in functional connectomics. Specifically, CoRR has aggregated 1,629 typical individuals’ resting state fMRI (rfMRI) data (5,093 rfMRI scans) from 18 international sites, and is openly sharing them via the International Data-sharing Neuroimaging Initiative (INDI). To allow researchers to generate various estimates of reliability and reproducibility, a variety of data acquisition procedures and experimental designs are included. Similarly, to enable users to assess the impact of commonly encountered artifacts (for example, motion) on characterizations of inter-individual variation, datasets of varying quality are included.
- Authors:
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- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology; Southwest University, Chongqing (China) Faculty of Psychology
- Univ. of Utah, Salt Lake City, UT (United States). Division of Neuroradiology
- Unité de neuroimagerie fonctionnelle, Centre de recherche de l’institut universitaire de gériatrie deMontréal, Université de Montréal, Montreal, Quebec (Canada)
- Univ. of Wisconsin, Madison, WI (United States). Dept. of Psychiatry
- New Jersey Institute of Technology, Newark, NJ (United States). Dept. of Biomedical Engineering
- Institute of Clinical Radiology, Ludwig-Maximilians-University, Munich (Germany)
- McGill Univ., Montreal, QC (Canada). Centre for Studies on Prevention of Alzheimer’s Disease, Department of Psychiatry, Douglas Institute
- Harvard Univ., Cambridge, MA (United States). Dept. of Psychology
- Mind Research Network, Albuquerque, NM (United States)
- Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY (United States); Phyllis Green and Randolph Cōwen Institute for Pediatric Neuroscience, the Child Study Center at NYU Langone Medical Center, New York, NY (United States)
- Southwest University, Chongqing (China) Faculty of Psychology
- Hangzhou Normal University, Gongshu, Hangzhou, Zhejiang (China). Center for Cognition and BrainDisorders
- Southwest University, Chongqing (China), Faculty of Psychology
- Southwest University, Chongqing (China). Faculty of Psychology
- Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY (United States)
- Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY (United States); Child Mind Institute, New York, NY (United States). Center for the Developing Brain
- Phyllis Green and Randolph Cōwen Institute for Pediatric Neuroscience, the Child Study Center at NYU Langone Medical Center, New York, NY (United States)
- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology; University of Chinese Academy of Sciences, Shijingshan, Beijing (China)
- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology; Chinese Academy of Sciences (CAS), Beijing (China). State Key Laboratory of Brain and Cognitive Science, Institute of Psychology
- Sichuan Univ., Chengdu (China), Huaxi MR Research Center (HMRRC), Dept. of Radiology
- Max Planck Inst. for Human Cognitive and Brain Sciences, Leipzig (Germany). Max Planck Research Group for Neuroanatomy & Connectivity
- Capital Medical University, Beijing (China). Dept. of Neurology, Xuanwu Hospital
- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology; University of Chinese Academy of Sciences, Shijingshan, Beijing (China)
- Beijing Normal University, Beijing (China). State Key Laboratory of Cognitive Neuroscience and Learning and IDG/McGovern Institute for Brain Research
- Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY (United States); Child Mind Institute, New York, NY (United States). Center for the Developing Brain
- Yale Univ., New Haven, CT (United States). Dept. of Psychology
- Dartmouth College, Hanover, NH (United States). Dept. of Psychological and Brain Sciences, Center for Cognitive Neuroscience
- Chinese Academy of Sciences (CAS), Beijing (China). Brainnetome Center and National Laboratory of Pattern Recognition, Institute of Automation
- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology
- Dartmouth College, Hanover, NH (United States). Dept. of Psychological and Brain Sciences, Center for Cognitive Neuroscience
- Virginia Tech Carilion Research Institute, Roanoke, VA (United States)
- Univ. of Wisconsin, Madison, WI (United States). Dept. of Psychiatry
- Capital Medical University, Xicheng (Beijing). Dept. of Radiology, Xuanwu Hospital
- Beijing Normal University, Beijing (China). State Key Laboratory of Cognitive Neuroscience and Learning and IDG/McGovern Institute for Brain Research
- Hangzhou Normal University, Gongshu, Hangzhou, Zhejiang (China). Center for Cognition and BrainDisorders
- Nanjing Univ., Nanjing (Jiangsu). Dept. of Medical Imaging, Jinling Hospital, School of Medicine
- Capital Medical University, Xicheng (Beijing). Dept. of Radiology, Xuanwu Hospital
- Univ. of Pittsburgh, PA (United States). Dept. of Psychiatry, School of Medicine
- Capital Normal University, Haidian (Beijing). Beijing Key Laboratory of Learning and Cognition, Dept. of Psychology
- Fudan Univ., Shanghai (China). Dept. of Neurosurgery, Huashan Hospital
- Max Planck Inst. for Human Cognitive and Brain Sciences, Leipzig (Germany). Max Planck Research Group for Neuroanatomy & Connectivity
- Univ. of Wisconsin, Madison, WI (United States). Dept. of Biomedical Engineering
- Univ. of Utah, Salt Lake City, UT (United States). Division of Neuroradiology
- Univ. of Pittsburgh, PA (United States). Dept. of Psychiatry, School of Medicine
- Univ. of Wisconsin, Madison, WI (United States). Dept. of Radiology
- Capital Medical University, Beijing (China). Dept. of Radiology, Xuanwu Hospital
- Fudan Univ., Shanghai (China). Dept. of Psychiatry, Huashan Hospital
- Fudan Univ., Shanghai (China). Dept. of Radiology, Huashan Hospital
- Max Planck Inst. for Human Cognitive and Brain Sciences, Leipzig (Germany). Dept. of Neurology
- Wuhan Univ. (China). Dept. of Psychiatry, Renmin Hospital of Wuhan
- Fudan Univ., Shanghai (China). Dept. of Neurosurgery, Huashan Hospital
- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology; Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY (United States); Child Mind Institute, New York, NY (United States). Center for the Developing Brain
- Chinese Academy of Sciences (CAS), Beijing (China). Key Laboratory of Behavioral Science and Magnetic Resonance Imaging Research Center, Institute of Psychology
- Nanjing Univ., Nanjing (Jiangsu). Dept. of Medical Imaging, Jinling Hospital, School of Medicine
- Nathan S. Kline Institute for Psychiatric Research, Orangeburg, NY (United States); Child Mind Institute, Center for the Developing Brain, NY (United States)
- Publication Date:
- Research Org.:
- Univ. of California, Davis, CA (United States). MIND Institute
- Sponsoring Org.:
- USDOE Office of Science (SC)
- Contributing Org.:
- The Consortium for Reliability and Reproducibility (CoRR)
- OSTI Identifier:
- 1624539
- Grant/Contract Number:
- FG02-99ER62764
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Scientific Data
- Additional Journal Information:
- Journal Volume: 1; Journal Issue: 1; Journal ID: ISSN 2052-4463
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 60 APPLIED LIFE SCIENCES; Science & technology - other topics; Brain imaging; Cognitive neuroscience; Functional magnetic resonance imaging; Neuroinformatics
Citation Formats
Zuo, Xi-Nian, Anderson, Jeffrey S., Bellec, Pierre, Birn, Rasmus M., Biswal, Bharat B., Blautzik, Janusch, Breitner, John C. S., Buckner, Randy L., Calhoun, Vince D., Castellanos, F. Xavier, Chen, Antao, Chen, Bing, Chen, Jiangtao, Chen, Xu, Colcombe, Stanley J., Courtney, William, Craddock, R. Cameron, Di Martino, Adriana, Dong, Hao-Ming, Fu, Xiaolan, Gong, Qiyong, Gorgolewski, Krzysztof J., Han, Ying, He, Ye, He, Yong, Ho, Erica, Holmes, Avram, Hou, Xiao-Hui, Huckins, Jeremy, Jiang, Tianzi, Jiang, Yi, Kelley, William, Kelly, Clare, King, Margaret, LaConte, Stephen M., Lainhart, Janet E., Lei, Xu, Li, Hui-Jie, Li, Kaiming, Li, Kuncheng, Lin, Qixiang, Liu, Dongqiang, Liu, Jia, Liu, Xun, Liu, Yijun, Lu, Guangming, Lu, Jie, Luna, Beatriz, Luo, Jing, Lurie, Daniel, Mao, Ying, Margulies, Daniel S., Mayer, Andrew R., Meindl, Thomas, Meyerand, Mary E., Nan, Weizhi, Nielsen, Jared A., O’Connor, David, Paulsen, David, Prabhakaran, Vivek, Qi, Zhigang, Qiu, Jiang, Shao, Chunhong, Shehzad, Zarrar, Tang, Weijun, Villringer, Arno, Wang, Huiling, Wang, Kai, Wei, Dongtao, Wei, Gao-Xia, Weng, Xu-Chu, Wu, Xuehai, Xu, Ting, Yang, Ning, Yang, Zhi, Zang, Yu-Feng, Zhang, Lei, Zhang, Qinglin, Zhang, Zhe, Zhang, Zhiqiang, Zhao, Ke, Zhen, Zonglei, Zhou, Yuan, Zhu, Xing-Ting, and Milham, Michael P. An open science resource for establishing reliability and reproducibility in functional connectomics. United States: N. p., 2014.
Web. doi:10.1038/sdata.2014.49.
Zuo, Xi-Nian, Anderson, Jeffrey S., Bellec, Pierre, Birn, Rasmus M., Biswal, Bharat B., Blautzik, Janusch, Breitner, John C. S., Buckner, Randy L., Calhoun, Vince D., Castellanos, F. Xavier, Chen, Antao, Chen, Bing, Chen, Jiangtao, Chen, Xu, Colcombe, Stanley J., Courtney, William, Craddock, R. Cameron, Di Martino, Adriana, Dong, Hao-Ming, Fu, Xiaolan, Gong, Qiyong, Gorgolewski, Krzysztof J., Han, Ying, He, Ye, He, Yong, Ho, Erica, Holmes, Avram, Hou, Xiao-Hui, Huckins, Jeremy, Jiang, Tianzi, Jiang, Yi, Kelley, William, Kelly, Clare, King, Margaret, LaConte, Stephen M., Lainhart, Janet E., Lei, Xu, Li, Hui-Jie, Li, Kaiming, Li, Kuncheng, Lin, Qixiang, Liu, Dongqiang, Liu, Jia, Liu, Xun, Liu, Yijun, Lu, Guangming, Lu, Jie, Luna, Beatriz, Luo, Jing, Lurie, Daniel, Mao, Ying, Margulies, Daniel S., Mayer, Andrew R., Meindl, Thomas, Meyerand, Mary E., Nan, Weizhi, Nielsen, Jared A., O’Connor, David, Paulsen, David, Prabhakaran, Vivek, Qi, Zhigang, Qiu, Jiang, Shao, Chunhong, Shehzad, Zarrar, Tang, Weijun, Villringer, Arno, Wang, Huiling, Wang, Kai, Wei, Dongtao, Wei, Gao-Xia, Weng, Xu-Chu, Wu, Xuehai, Xu, Ting, Yang, Ning, Yang, Zhi, Zang, Yu-Feng, Zhang, Lei, Zhang, Qinglin, Zhang, Zhe, Zhang, Zhiqiang, Zhao, Ke, Zhen, Zonglei, Zhou, Yuan, Zhu, Xing-Ting, & Milham, Michael P. An open science resource for establishing reliability and reproducibility in functional connectomics. United States. https://doi.org/10.1038/sdata.2014.49
Zuo, Xi-Nian, Anderson, Jeffrey S., Bellec, Pierre, Birn, Rasmus M., Biswal, Bharat B., Blautzik, Janusch, Breitner, John C. S., Buckner, Randy L., Calhoun, Vince D., Castellanos, F. Xavier, Chen, Antao, Chen, Bing, Chen, Jiangtao, Chen, Xu, Colcombe, Stanley J., Courtney, William, Craddock, R. Cameron, Di Martino, Adriana, Dong, Hao-Ming, Fu, Xiaolan, Gong, Qiyong, Gorgolewski, Krzysztof J., Han, Ying, He, Ye, He, Yong, Ho, Erica, Holmes, Avram, Hou, Xiao-Hui, Huckins, Jeremy, Jiang, Tianzi, Jiang, Yi, Kelley, William, Kelly, Clare, King, Margaret, LaConte, Stephen M., Lainhart, Janet E., Lei, Xu, Li, Hui-Jie, Li, Kaiming, Li, Kuncheng, Lin, Qixiang, Liu, Dongqiang, Liu, Jia, Liu, Xun, Liu, Yijun, Lu, Guangming, Lu, Jie, Luna, Beatriz, Luo, Jing, Lurie, Daniel, Mao, Ying, Margulies, Daniel S., Mayer, Andrew R., Meindl, Thomas, Meyerand, Mary E., Nan, Weizhi, Nielsen, Jared A., O’Connor, David, Paulsen, David, Prabhakaran, Vivek, Qi, Zhigang, Qiu, Jiang, Shao, Chunhong, Shehzad, Zarrar, Tang, Weijun, Villringer, Arno, Wang, Huiling, Wang, Kai, Wei, Dongtao, Wei, Gao-Xia, Weng, Xu-Chu, Wu, Xuehai, Xu, Ting, Yang, Ning, Yang, Zhi, Zang, Yu-Feng, Zhang, Lei, Zhang, Qinglin, Zhang, Zhe, Zhang, Zhiqiang, Zhao, Ke, Zhen, Zonglei, Zhou, Yuan, Zhu, Xing-Ting, and Milham, Michael P. Tue .
"An open science resource for establishing reliability and reproducibility in functional connectomics". United States. https://doi.org/10.1038/sdata.2014.49. https://www.osti.gov/servlets/purl/1624539.
@article{osti_1624539,
title = {An open science resource for establishing reliability and reproducibility in functional connectomics},
author = {Zuo, Xi-Nian and Anderson, Jeffrey S. and Bellec, Pierre and Birn, Rasmus M. and Biswal, Bharat B. and Blautzik, Janusch and Breitner, John C. S. and Buckner, Randy L. and Calhoun, Vince D. and Castellanos, F. Xavier and Chen, Antao and Chen, Bing and Chen, Jiangtao and Chen, Xu and Colcombe, Stanley J. and Courtney, William and Craddock, R. Cameron and Di Martino, Adriana and Dong, Hao-Ming and Fu, Xiaolan and Gong, Qiyong and Gorgolewski, Krzysztof J. and Han, Ying and He, Ye and He, Yong and Ho, Erica and Holmes, Avram and Hou, Xiao-Hui and Huckins, Jeremy and Jiang, Tianzi and Jiang, Yi and Kelley, William and Kelly, Clare and King, Margaret and LaConte, Stephen M. and Lainhart, Janet E. and Lei, Xu and Li, Hui-Jie and Li, Kaiming and Li, Kuncheng and Lin, Qixiang and Liu, Dongqiang and Liu, Jia and Liu, Xun and Liu, Yijun and Lu, Guangming and Lu, Jie and Luna, Beatriz and Luo, Jing and Lurie, Daniel and Mao, Ying and Margulies, Daniel S. and Mayer, Andrew R. and Meindl, Thomas and Meyerand, Mary E. and Nan, Weizhi and Nielsen, Jared A. and O’Connor, David and Paulsen, David and Prabhakaran, Vivek and Qi, Zhigang and Qiu, Jiang and Shao, Chunhong and Shehzad, Zarrar and Tang, Weijun and Villringer, Arno and Wang, Huiling and Wang, Kai and Wei, Dongtao and Wei, Gao-Xia and Weng, Xu-Chu and Wu, Xuehai and Xu, Ting and Yang, Ning and Yang, Zhi and Zang, Yu-Feng and Zhang, Lei and Zhang, Qinglin and Zhang, Zhe and Zhang, Zhiqiang and Zhao, Ke and Zhen, Zonglei and Zhou, Yuan and Zhu, Xing-Ting and Milham, Michael P.},
abstractNote = {Efforts to identify meaningful functional imaging-based biomarkers are limited by the ability to reliably characterize inter-individual differences in human brain function. Although a growing number of connectomics-based measures are reported to have moderate to high test-retest reliability, the variability in data acquisition, experimental designs, and analytic methods precludes the ability to generalize results. The Consortium for Reliability and Reproducibility (CoRR) is working to address this challenge and establish test-retest reliability as a minimum standard for methods development in functional connectomics. Specifically, CoRR has aggregated 1,629 typical individuals’ resting state fMRI (rfMRI) data (5,093 rfMRI scans) from 18 international sites, and is openly sharing them via the International Data-sharing Neuroimaging Initiative (INDI). To allow researchers to generate various estimates of reliability and reproducibility, a variety of data acquisition procedures and experimental designs are included. Similarly, to enable users to assess the impact of commonly encountered artifacts (for example, motion) on characterizations of inter-individual variation, datasets of varying quality are included.},
doi = {10.1038/sdata.2014.49},
journal = {Scientific Data},
number = 1,
volume = 1,
place = {United States},
year = {Tue Dec 09 00:00:00 EST 2014},
month = {Tue Dec 09 00:00:00 EST 2014}
}
Web of Science
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