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Title: Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities

Authors:
 [1];  [2];  [3];  [1];  [2];  [2];  [4];  [1]
  1. Oregon State Univ., Corvallis, OR (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Univ. of Tennessee, Knoxville, TN (United States)
  3. Univ. of Washington, Seattle, WA (United States)
  4. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC); USDOE National Nuclear Security Administration (NNSA)
OSTI Identifier:
1474503
Alternate Identifier(s):
OSTI ID: 1488816
Report Number(s):
LLNL-JRNL-741426
Journal ID: ISSN 1664-302X
Grant/Contract Number:  
AC05-00OR22725; AC52-07NA27344
Resource Type:
Accepted Manuscript
Journal Name:
Frontiers in Microbiology
Additional Journal Information:
Journal Volume: 9; Journal Issue: n/a; Journal ID: ISSN 1664-302X
Publisher:
Frontiers Research Foundation
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Biological and medical sciences

Citation Formats

Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C., Hettich, Robert, Pan, Chongle, Mayali, Xavier, and Mueller, Ryan S.. Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities. United States: N. p., 2018. Web. doi:10.3389/fmicb.2018.01282.
Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C., Hettich, Robert, Pan, Chongle, Mayali, Xavier, & Mueller, Ryan S.. Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities. United States. https://doi.org/10.3389/fmicb.2018.01282
Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C., Hettich, Robert, Pan, Chongle, Mayali, Xavier, and Mueller, Ryan S.. Thu . "Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities". United States. https://doi.org/10.3389/fmicb.2018.01282. https://www.osti.gov/servlets/purl/1474503.
@article{osti_1474503,
title = {Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities},
author = {Kieft, Brandon and Li, Zhou and Bryson, Samuel and Crump, Byron C. and Hettich, Robert and Pan, Chongle and Mayali, Xavier and Mueller, Ryan S.},
abstractNote = {},
doi = {10.3389/fmicb.2018.01282},
journal = {Frontiers in Microbiology},
number = n/a,
volume = 9,
place = {United States},
year = {Thu Jun 14 00:00:00 EDT 2018},
month = {Thu Jun 14 00:00:00 EDT 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 29 works
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Figures / Tables:

Table 1. Table 1.: Genes in Rhodobacterales and Flavobacteriales lineages that are under putative positive selection. OG = orthologous group, where the 3-digit numbers represent clusters of orthologs predicted by ProteinOrtho. P-value = p-value from modeling. Q-value = Benjamin-Hochberg correction of p-values with FDR cut-off set at 0.05. In the COG cat.more » column, typefaces indicate the following classes: bold = Metabolism; italic = Cell Processing and Signaling; underlined = Information Storage and Processing; normal = Poorly characterized.« less

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journal, January 2015

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Proteinortho: Detection of (Co-)orthologs in large-scale analysis
journal, April 2011


Carbon Monoxide Photoproduction from Particles and Solutes in the Delaware Estuary under Contrasting Hydrological Conditions
journal, November 2015

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Bacterioplankton Dynamics within a Large Anthropogenically Impacted Urban Estuary
journal, January 2016

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Particulate organic matter export by two contrasting small mountainous rivers from the Pacific Northwest, U.S.A.: POM IN CONTRASTING SMALL MOUNTAINOUS RIVERS
journal, February 2013

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IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
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Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
journal, November 2001

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Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates
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An alternative polysaccharide uptake mechanism of marine bacteria
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Coupling Between the Coastal Ocean and Yaquina Bay, Oregon: Importance of Oceanic Inputs Relative to Other Nitrogen Sources
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Influence of Salinity on Bacterioplankton Communities from the Brazilian Rain Forest to the Coastal Atlantic Ocean
journal, March 2011


Metaproteomics of aquatic microbial communities in a deep and stratified estuary
journal, September 2015

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BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences
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Codon-Substitution Models for Heterogeneous Selection Pressure at Amino Acid Sites
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