Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water
Abstract
Here, the connection between specific features in the water X-ray absorption spectrum and X-ray emission spectrum (XES) and the local H-bond coordination is studied based on structures obtained from path-integral molecular dynamics simulations using either the opt-PBE-vdW density functional or the MB-pol force field. Computing the XES spectrum using all molecules in a snapshot results in only one peak in the lone-pair (1b1) region, while the experiment shows two peaks separated by 0.8-0.9 eV. Different H-bond configurations were classified based on the local structure index (LSI) and a geometrical H-bond cone criterion. We find that tetrahedrally coordinated molecules characterized by high LSI values and two strong donated and two strong accepted H-bonds contribute to the low energy 1b1 emission peak and to the post-edge region in absorption. Molecules with the asymmetric H-bond environment with one strong accepted H-bond and one strong donated H-bond and low LSI values give rise to the high energy 1b1 peak in the emission spectrum and mainly contribute to the pre-edge and main-edge in the absorption spectrum. The 1b1 peak splitting can be increased to 0.62 eV by imposing constraints on the H-bond length, i.e., for very tetrahedral structures short H-bonds (less than 2.68 Å) andmore »
- Authors:
-
- Stockholm Univ. (Sweden). Dept. of Physics and AlbaNova Univ. Center
- Univ. of Nottingham (United Kingdom). School of Chemistry
- SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Inst.; Heidelberg Univ. (Germany). Interdisciplinary Center for Scientific Computing
- Publication Date:
- Research Org.:
- SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
- Sponsoring Org.:
- USDOE; Swedish Research Council (SRC); Swedish National Infrastructure for Computing (SNIC); Leverhulme Trust
- OSTI Identifier:
- 1438551
- Grant/Contract Number:
- AC02-76SF00515; 2015-009559; RF-2014-231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Journal of Chemical Physics
- Additional Journal Information:
- Journal Volume: 148; Journal Issue: 14; Journal ID: ISSN 0021-9606
- Publisher:
- American Institute of Physics (AIP)
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 74 ATOMIC AND MOLECULAR PHYSICS; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Hydrogen bonding; Absorption spectroscopy; Density functional theory; X-rays; Molecular dynamics; Classical statistical mechanics; Absorption spectra; Emission spectra
Citation Formats
Zhovtobriukh, Iurii, Besley, Nicholas A., Fransson, Thomas, Nilsson, Anders, and Pettersson, Lars G. M. Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water. United States: N. p., 2018.
Web. doi:10.1063/1.5009457.
Zhovtobriukh, Iurii, Besley, Nicholas A., Fransson, Thomas, Nilsson, Anders, & Pettersson, Lars G. M. Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water. United States. https://doi.org/10.1063/1.5009457
Zhovtobriukh, Iurii, Besley, Nicholas A., Fransson, Thomas, Nilsson, Anders, and Pettersson, Lars G. M. Sat .
"Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water". United States. https://doi.org/10.1063/1.5009457. https://www.osti.gov/servlets/purl/1438551.
@article{osti_1438551,
title = {Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water},
author = {Zhovtobriukh, Iurii and Besley, Nicholas A. and Fransson, Thomas and Nilsson, Anders and Pettersson, Lars G. M.},
abstractNote = {Here, the connection between specific features in the water X-ray absorption spectrum and X-ray emission spectrum (XES) and the local H-bond coordination is studied based on structures obtained from path-integral molecular dynamics simulations using either the opt-PBE-vdW density functional or the MB-pol force field. Computing the XES spectrum using all molecules in a snapshot results in only one peak in the lone-pair (1b1) region, while the experiment shows two peaks separated by 0.8-0.9 eV. Different H-bond configurations were classified based on the local structure index (LSI) and a geometrical H-bond cone criterion. We find that tetrahedrally coordinated molecules characterized by high LSI values and two strong donated and two strong accepted H-bonds contribute to the low energy 1b1 emission peak and to the post-edge region in absorption. Molecules with the asymmetric H-bond environment with one strong accepted H-bond and one strong donated H-bond and low LSI values give rise to the high energy 1b1 peak in the emission spectrum and mainly contribute to the pre-edge and main-edge in the absorption spectrum. The 1b1 peak splitting can be increased to 0.62 eV by imposing constraints on the H-bond length, i.e., for very tetrahedral structures short H-bonds (less than 2.68 Å) and for very asymmetric structures elongated H-bonds (longer than 2.8 Å). Such structures are present, but underrepresented, in the simulations which give more of an average of the two extremes.},
doi = {10.1063/1.5009457},
journal = {Journal of Chemical Physics},
number = 14,
volume = 148,
place = {United States},
year = {Sat Apr 14 00:00:00 EDT 2018},
month = {Sat Apr 14 00:00:00 EDT 2018}
}
Web of Science
Figures / Tables:
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