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Title: Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water

Abstract

Here, the connection between specific features in the water X-ray absorption spectrum and X-ray emission spectrum (XES) and the local H-bond coordination is studied based on structures obtained from path-integral molecular dynamics simulations using either the opt-PBE-vdW density functional or the MB-pol force field. Computing the XES spectrum using all molecules in a snapshot results in only one peak in the lone-pair (1b1) region, while the experiment shows two peaks separated by 0.8-0.9 eV. Different H-bond configurations were classified based on the local structure index (LSI) and a geometrical H-bond cone criterion. We find that tetrahedrally coordinated molecules characterized by high LSI values and two strong donated and two strong accepted H-bonds contribute to the low energy 1b1 emission peak and to the post-edge region in absorption. Molecules with the asymmetric H-bond environment with one strong accepted H-bond and one strong donated H-bond and low LSI values give rise to the high energy 1b1 peak in the emission spectrum and mainly contribute to the pre-edge and main-edge in the absorption spectrum. The 1b1 peak splitting can be increased to 0.62 eV by imposing constraints on the H-bond length, i.e., for very tetrahedral structures short H-bonds (less than 2.68 Å) andmore » for very asymmetric structures elongated H-bonds (longer than 2.8 Å). Such structures are present, but underrepresented, in the simulations which give more of an average of the two extremes.« less

Authors:
 [1]; ORCiD logo [2]; ORCiD logo [3];  [1]; ORCiD logo [1]
  1. Stockholm Univ. (Sweden). Dept. of Physics and AlbaNova Univ. Center
  2. Univ. of Nottingham (United Kingdom). School of Chemistry
  3. SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Inst.; Heidelberg Univ. (Germany). Interdisciplinary Center for Scientific Computing
Publication Date:
Research Org.:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Org.:
USDOE; Swedish Research Council (SRC); Swedish National Infrastructure for Computing (SNIC); Leverhulme Trust
OSTI Identifier:
1438551
Grant/Contract Number:  
AC02-76SF00515; 2015-009559; RF-2014-231
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Chemical Physics
Additional Journal Information:
Journal Volume: 148; Journal Issue: 14; Journal ID: ISSN 0021-9606
Publisher:
American Institute of Physics (AIP)
Country of Publication:
United States
Language:
English
Subject:
74 ATOMIC AND MOLECULAR PHYSICS; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Hydrogen bonding; Absorption spectroscopy; Density functional theory; X-rays; Molecular dynamics; Classical statistical mechanics; Absorption spectra; Emission spectra

Citation Formats

Zhovtobriukh, Iurii, Besley, Nicholas A., Fransson, Thomas, Nilsson, Anders, and Pettersson, Lars G. M. Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water. United States: N. p., 2018. Web. doi:10.1063/1.5009457.
Zhovtobriukh, Iurii, Besley, Nicholas A., Fransson, Thomas, Nilsson, Anders, & Pettersson, Lars G. M. Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water. United States. https://doi.org/10.1063/1.5009457
Zhovtobriukh, Iurii, Besley, Nicholas A., Fransson, Thomas, Nilsson, Anders, and Pettersson, Lars G. M. Sat . "Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water". United States. https://doi.org/10.1063/1.5009457. https://www.osti.gov/servlets/purl/1438551.
@article{osti_1438551,
title = {Relationship between x-ray emission and absorption spectroscopy and the local H-bond environment in water},
author = {Zhovtobriukh, Iurii and Besley, Nicholas A. and Fransson, Thomas and Nilsson, Anders and Pettersson, Lars G. M.},
abstractNote = {Here, the connection between specific features in the water X-ray absorption spectrum and X-ray emission spectrum (XES) and the local H-bond coordination is studied based on structures obtained from path-integral molecular dynamics simulations using either the opt-PBE-vdW density functional or the MB-pol force field. Computing the XES spectrum using all molecules in a snapshot results in only one peak in the lone-pair (1b1) region, while the experiment shows two peaks separated by 0.8-0.9 eV. Different H-bond configurations were classified based on the local structure index (LSI) and a geometrical H-bond cone criterion. We find that tetrahedrally coordinated molecules characterized by high LSI values and two strong donated and two strong accepted H-bonds contribute to the low energy 1b1 emission peak and to the post-edge region in absorption. Molecules with the asymmetric H-bond environment with one strong accepted H-bond and one strong donated H-bond and low LSI values give rise to the high energy 1b1 peak in the emission spectrum and mainly contribute to the pre-edge and main-edge in the absorption spectrum. The 1b1 peak splitting can be increased to 0.62 eV by imposing constraints on the H-bond length, i.e., for very tetrahedral structures short H-bonds (less than 2.68 Å) and for very asymmetric structures elongated H-bonds (longer than 2.8 Å). Such structures are present, but underrepresented, in the simulations which give more of an average of the two extremes.},
doi = {10.1063/1.5009457},
journal = {Journal of Chemical Physics},
number = 14,
volume = 148,
place = {United States},
year = {Sat Apr 14 00:00:00 EDT 2018},
month = {Sat Apr 14 00:00:00 EDT 2018}
}

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Figures / Tables:

FIG. 1 FIG. 1: X-ray emission spectra summed over all molecules in randomly selected PIMD snapshots and compared with the experimental spectrum from Ref. 11 (top). (Middle) XES spectrum for one bead of an opt-PBE-vdW snapshot containing 64 water molecules. (Bottom) XES spectrum computed for one bead of an MB-pol snapshot containingmore » 256 water molecules. A shift of 0.28 and 0.09 eV has been applied for opt-PBE-vdW and MB-pol, respectively, to align with the 1b2 feature in the experiment.« less

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Two-structure thermodynamics for the TIP4P/2005 model of water covering supercooled and deeply stretched regions
journal, January 2017

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Disentangling structural information from core-level excitation spectra
journal, July 2017


Electronic signature of the instantaneous asymmetry in the first coordination shell of liquid water
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The structure of ambient water
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A new hybrid exchange–correlation functional using the Coulomb-attenuating method (CAM-B3LYP)
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Ultrafast Vibrational Dynamics of Hydrogen Bonds in the Condensed Phase
journal, April 2004

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Nature of the Asymmetry in the Hydrogen-Bond Networks of Hexagonal Ice and Liquid Water
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Nuclear dynamics in the core-excited state of aqueous ammonia probed by resonant inelastic soft x-ray scattering
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Nanoscale Dynamics of Phase Flipping in Water near its Hypothesized Liquid-Liquid Critical Point
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Two phases?
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Parallel Nanoimprint Forming of One-Dimensional Chiral Semiconductor for Strain-Engineered Optical Properties
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The putative liquid-liquid transition is a liquid-solid transition in atomistic models of water
journal, October 2011

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Time scales of supercooled water and implications for reversible polyamorphism
journal, May 2015


Optimization of Gaussian-type basis sets for local spin density functional calculations. Part I. Boron through neon, optimization technique and validation
journal, February 1992

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Local statistical interpretation for water structure
journal, May 2013


Fluctuations in ambient water
journal, December 2012


X-ray emission spectroscopy of bulk liquid water in “no-man’s land”
journal, January 2015

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Electronic structure effects in liquid water studied by photoelectron spectroscopy and density functional theory
journal, July 2008


Ultrafast Molecular Dissociation of Water in Ice
journal, September 2004


The inhomogeneous structure of water at ambient conditions
journal, August 2009

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Finite-size scaling investigation of the liquid-liquid critical point in ST2 water and its stability with respect to crystallization
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Role of Non-Hydrogen-Bonded Molecules in the Oxygen K-Edge Spectrum of Ice
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Full Valence Band Photoemission from Liquid Water Using EUV Synchrotron Radiation
journal, April 2004

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Nonlinear response theory with relaxation: The first-order hyperpolarizability
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The Structure of the First Coordination Shell in Liquid Water
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Investigation of the electronic structure of ice by high resolution x‐ray spectroscopy
journal, May 1982

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Vibrational interference effects in x-ray emission of a model water dimer: Implications for the interpretation of the liquid spectrum
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Efficient Calculations of Molecular Linear Response Properties for Spectral Regions
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Is ambient water inhomogeneous on the nanometer-length scale?
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Toward a Universal Water Model: First Principles Simulations from the Dimer to the Liquid Phase
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Consequences of chain networks on thermodynamic, dielectric and structural properties for liquid water
journal, January 2007

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Probing the OH Stretch in Different Local Environments in Liquid Water
journal, November 2017


Perspective on the structure of liquid water
journal, November 2011


Probing the Local Structure of Liquid Water by X-ray Absorption Spectroscopy†
journal, October 2006

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Works referencing / citing this record:

Improving the predictive quality of time‐dependent density functional theory calculations of the X‐ray emission spectroscopy of organic molecules
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Temperature dependent anomalous fluctuations in water: shift of ≈1 kbar between experiment and classical force field simulations
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Probing hydrogen bond strength in liquid water by resonant inelastic X-ray scattering
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A proposal for the structure of high- and low-density fluctuations in liquid water
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Efficient simulation of near-edge x-ray absorption fine structure (NEXAFS) in density-functional theory: Comparison of core-level constraining approaches
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  • Michelitsch, Georg S.; Reuter, Karsten
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Probing hydrogen bond strength in liquid water by resonant inelastic X-ray scattering
journal, March 2019

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Measurements of ultrafast dissociation in resonant inelastic x-ray scattering of water
journal, May 2019

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Molecular aggregation in liquid water: Laplace spectra and spectral clustering of H-bonded network
text, January 2020


Translational and rotational dynamics of high and low density TIP4P/2005 water
journal, June 2019

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Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.