DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs

Abstract

The ultra-bright femtosecond X-ray pulses provided by X-ray Free Electron Lasers (XFELs) open capabilities for studying the structure and dynamics of a wide variety of biological and inorganic systems beyond what is possible at synchrotron sources. Although the chemistry and structure at the catalytic sites have been studied intensively in both biological and inorganic systems, a full understanding of the atomic-scale chemistry requires new approaches beyond the steady state X-ray crystallography and X-ray spectroscopy at cryogenic temperatures. Following the dynamic changes in the geometric and electronic structure at ambient conditions, while overcoming X-ray damage to the redox active catalytic center, is key for deriving reaction mechanisms. Such studies become possible by using the intense and ultra-short femtosecond X-ray pulses from an XFEL, where sample is probed before it is damaged. We have developed methodology for simultaneously collecting X-ray diffraction data and X-ray emission spectra, using an energy dispersive spectrometer, at ambient conditions, and used this approach to study the room temperature structure and intermediate states of the photosynthetic water oxidizing metallo-protein, photosystem II. Moreover, we have also used this setup to simultaneously collect the X-ray emission spectra from multiple metals to follow the ultrafast dynamics of light-induced charge transfer betweenmore » multiple metal sites. A Mn–Ti containing system was studied at an XFEL to demonstrate the efficacy and potential of this method.« less

Authors:
 [1];  [2];  [3];  [4];  [4];  [4];  [4];  [4];  [5];  [4];  [6];  [7];  [8];  [9];  [10];  [7];  [4];  [11];  [6];  [12] more »;  [2];  [4];  [2];  [4];  [10];  [7];  [9];  [6];  [5];  [13];  [9];  [4];  [4];  [8];  [14];  [15] « less
  1. SLAC National Accelerator Lab., Menlo Park, CA (United States)
  2. Kyoto Univ. (Japan)
  3. SLAC National Accelerator Lab., Menlo Park, CA (United States). Photon Ultrafast Laser Science and Engineering Inst. (PULSE)
  4. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
  5. North Carolina State Univ., Raleigh, NC (United States)
  6. RIKEN SPring-8 Center, Kouto (Japan); Tohoku Univ., Sendai (Japan)
  7. Tohoku Univ., Sendai (Japan)
  8. Humboldt Univ. of Berlin (Germany)
  9. Japan Synchrotron Radiation Research Institute (JASRI), Kouto (Japan)
  10. SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
  11. Umea Univ. (Sweden)
  12. Kyoto Univ. (Japan); RIKEN SPring-8 Center, Kouto (Japan)
  13. Center for High Pressure Science & Technology Advanced Research, Shanghai (China)
  14. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); SLAC National Accelerator Lab., Menlo Park, CA (United States)
  15. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Tohoku Univ., Sendai (Japan)
Publication Date:
Research Org.:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1378998
Grant/Contract Number:  
AC02-05CH11231
Resource Type:
Accepted Manuscript
Journal Name:
Faraday Discussions
Additional Journal Information:
Journal Volume: 194; Journal ID: ISSN 1359-6640
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Alonso-Mori, R., Asa, K., Bergmann, U., Brewster, A. S., Chatterjee, R., Cooper, J. K., Frei, H. M., Fuller, F. D., Goggins, E., Gul, S., Fukuzawa, H., Iablonskyi, D., Ibrahim, M., Katayama, T., Kroll, T., Kumagai, Y., McClure, B. A., Messinger, J., Motomura, K., Nagaya, K., Nishiyama, T., Saracini, C., Sato, Y., Sauter, N. K., Sokaras, D., Takanashi, T., Togashi, T., Ueda, K., Weare, W. W., Weng, T. -C., Yabashi, M., Yachandra, V. K., Young, I. D., Zouni, A., Kern, J. F., and Yano, J. Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs. United States: N. p., 2016. Web. doi:10.1039/c6fd00084c.
Alonso-Mori, R., Asa, K., Bergmann, U., Brewster, A. S., Chatterjee, R., Cooper, J. K., Frei, H. M., Fuller, F. D., Goggins, E., Gul, S., Fukuzawa, H., Iablonskyi, D., Ibrahim, M., Katayama, T., Kroll, T., Kumagai, Y., McClure, B. A., Messinger, J., Motomura, K., Nagaya, K., Nishiyama, T., Saracini, C., Sato, Y., Sauter, N. K., Sokaras, D., Takanashi, T., Togashi, T., Ueda, K., Weare, W. W., Weng, T. -C., Yabashi, M., Yachandra, V. K., Young, I. D., Zouni, A., Kern, J. F., & Yano, J. Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs. United States. https://doi.org/10.1039/c6fd00084c
Alonso-Mori, R., Asa, K., Bergmann, U., Brewster, A. S., Chatterjee, R., Cooper, J. K., Frei, H. M., Fuller, F. D., Goggins, E., Gul, S., Fukuzawa, H., Iablonskyi, D., Ibrahim, M., Katayama, T., Kroll, T., Kumagai, Y., McClure, B. A., Messinger, J., Motomura, K., Nagaya, K., Nishiyama, T., Saracini, C., Sato, Y., Sauter, N. K., Sokaras, D., Takanashi, T., Togashi, T., Ueda, K., Weare, W. W., Weng, T. -C., Yabashi, M., Yachandra, V. K., Young, I. D., Zouni, A., Kern, J. F., and Yano, J. Thu . "Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs". United States. https://doi.org/10.1039/c6fd00084c. https://www.osti.gov/servlets/purl/1378998.
@article{osti_1378998,
title = {Towards characterization of photo-excited electron transfer and catalysis in natural and artificial systems using XFELs},
author = {Alonso-Mori, R. and Asa, K. and Bergmann, U. and Brewster, A. S. and Chatterjee, R. and Cooper, J. K. and Frei, H. M. and Fuller, F. D. and Goggins, E. and Gul, S. and Fukuzawa, H. and Iablonskyi, D. and Ibrahim, M. and Katayama, T. and Kroll, T. and Kumagai, Y. and McClure, B. A. and Messinger, J. and Motomura, K. and Nagaya, K. and Nishiyama, T. and Saracini, C. and Sato, Y. and Sauter, N. K. and Sokaras, D. and Takanashi, T. and Togashi, T. and Ueda, K. and Weare, W. W. and Weng, T. -C. and Yabashi, M. and Yachandra, V. K. and Young, I. D. and Zouni, A. and Kern, J. F. and Yano, J.},
abstractNote = {The ultra-bright femtosecond X-ray pulses provided by X-ray Free Electron Lasers (XFELs) open capabilities for studying the structure and dynamics of a wide variety of biological and inorganic systems beyond what is possible at synchrotron sources. Although the chemistry and structure at the catalytic sites have been studied intensively in both biological and inorganic systems, a full understanding of the atomic-scale chemistry requires new approaches beyond the steady state X-ray crystallography and X-ray spectroscopy at cryogenic temperatures. Following the dynamic changes in the geometric and electronic structure at ambient conditions, while overcoming X-ray damage to the redox active catalytic center, is key for deriving reaction mechanisms. Such studies become possible by using the intense and ultra-short femtosecond X-ray pulses from an XFEL, where sample is probed before it is damaged. We have developed methodology for simultaneously collecting X-ray diffraction data and X-ray emission spectra, using an energy dispersive spectrometer, at ambient conditions, and used this approach to study the room temperature structure and intermediate states of the photosynthetic water oxidizing metallo-protein, photosystem II. Moreover, we have also used this setup to simultaneously collect the X-ray emission spectra from multiple metals to follow the ultrafast dynamics of light-induced charge transfer between multiple metal sites. A Mn–Ti containing system was studied at an XFEL to demonstrate the efficacy and potential of this method.},
doi = {10.1039/c6fd00084c},
journal = {Faraday Discussions},
number = ,
volume = 194,
place = {United States},
year = {Thu Jun 02 00:00:00 EDT 2016},
month = {Thu Jun 02 00:00:00 EDT 2016}
}

Works referenced in this record:

Kinetics of Electron Transfer from Q A to Q B in Photosystem II
journal, October 2001

  • de Wijn, Rik; van Gorkom, Hans J.
  • Biochemistry, Vol. 40, Issue 39
  • DOI: 10.1021/bi010852r

Reversible lattice repacking illustrates the temperature dependence of macromolecular interactions
journal, August 2001

  • Juers, Douglas H.; Matthews, Brian W.
  • Journal of Molecular Biology, Vol. 311, Issue 4
  • DOI: 10.1006/jmbi.2001.4891

The Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS)
journal, March 2010


Photochemistry of the Reaction Centers of System ii Under Repetitive Flash Group Excitation in Isolated Chloroplasts
journal, May 1980


Simultaneous detection of electronic structure changes from two elements of a bifunctional catalyst using wavelength-dispersive X-ray emission spectroscopy and in situ electrochemistry
journal, January 2015

  • Gul, Sheraz; Ng, Jia Wei Desmond; Alonso-Mori, Roberto
  • Physical Chemistry Chemical Physics, Vol. 17, Issue 14
  • DOI: 10.1039/C5CP01023C

Mechanistic and structural aspects of photosynthetic water oxidation
journal, August 1997


Amplified X-Ray Emission from Core-Ionized Diatomic Molecules
journal, January 2013


Atomic inner-shell laser at 1.5-ångström wavelength pumped by an X-ray free-electron laser
journal, August 2015

  • Yoneda, Hitoki; Inubushi, Yuichi; Nagamine, Kazunori
  • Nature, Vol. 524, Issue 7566
  • DOI: 10.1038/nature14894

Liquid explosions induced by X-ray laser pulses
journal, May 2016

  • Stan, Claudiu A.; Milathianaki, Despina; Laksmono, Hartawan
  • Nature Physics, Vol. 12, Issue 10
  • DOI: 10.1038/nphys3779

Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses
journal, November 2014

  • Suga, Michihiro; Akita, Fusamichi; Hirata, Kunio
  • Nature, Vol. 517, Issue 7532
  • DOI: 10.1038/nature13991

EXAFS Spectroscopic Analysis of Heterobinuclear TiOMn Charge-Transfer Chromophore in Mesoporous Silica
journal, November 2011

  • Soo, H. S.; Macnaughtan, M. L.; Weare, W. W.
  • The Journal of Physical Chemistry C, Vol. 115, Issue 50
  • DOI: 10.1021/jp208419q

A Periodic Walk through a Series of First-Row, Oxido-Bridged, Heterodimetallic Molecules: Synthesis and Structure
journal, January 2016

  • Goggins, Eric M.; Lekich, Travis T.; Weare, Walter W.
  • European Journal of Inorganic Chemistry, Vol. 2016, Issue 7
  • DOI: 10.1002/ejic.201501325

Concentric-flow electrokinetic injector enables serial crystallography of ribosome and photosystem II
journal, November 2015

  • Sierra, Raymond G.; Gati, Cornelius; Laksmono, Hartawan
  • Nature Methods, Vol. 13, Issue 1
  • DOI: 10.1038/nmeth.3667

Coupling carbon dioxide reduction with water oxidation in nanoscale photocatalytic assemblies
journal, January 2016

  • Kim, Wooyul; McClure, Beth Anne; Edri, Eran
  • Chemical Society Reviews, Vol. 45, Issue 11
  • DOI: 10.1039/C6CS00062B

X-ray damage to the Mn4Ca complex in single crystals of photosystem II: A case study for metalloprotein crystallography
journal, August 2005

  • Yano, J.; Kern, J.; Irrgang, K. -D.
  • Proceedings of the National Academy of Sciences, Vol. 102, Issue 34
  • DOI: 10.1073/pnas.0505207102

Spare quinones in the QB cavity of crystallized photosystem II from Thermosynechococcus elongatus
journal, June 2007

  • Krivanek, Roland; Kern, Jan; Zouni, Athina
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1767, Issue 6
  • DOI: 10.1016/j.bbabio.2007.02.013

Polynuclear Photocatalysts in Nanoporous Silica for Artificial Photosynthesis
journal, November 2009


A multi-crystal wavelength dispersive x-ray spectrometer
journal, July 2012

  • Alonso-Mori, Roberto; Kern, Jan; Sokaras, Dimosthenis
  • Review of Scientific Instruments, Vol. 83, Issue 7
  • DOI: 10.1063/1.4737630

Femtosecond X-ray protein nanocrystallography
journal, February 2011

  • Chapman, Henry N.; Fromme, Petra; Barty, Anton
  • Nature, Vol. 470, Issue 7332, p. 73-77
  • DOI: 10.1038/nature09750

Radiation damage to macromolecules: kill or cure?
journal, February 2015


Taking snapshots of photosynthetic water oxidation using femtosecond X-ray diffraction and spectroscopy
journal, July 2014

  • Kern, Jan; Tran, Rosalie; Alonso-Mori, Roberto
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms5371

Excited State Electron Transfer of All-Inorganic Heterobinuclear TiOMn 2+ Chromophore Anchored on Silica Nanoparticle Surface
journal, May 2014

  • McClure, Beth Anne; Frei, Heinz
  • The Journal of Physical Chemistry C, Vol. 118, Issue 22
  • DOI: 10.1021/jp503196w

Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å
journal, April 2011

  • Umena, Yasufumi; Kawakami, Keisuke; Shen, Jian-Ren
  • Nature, Vol. 473, Issue 7345
  • DOI: 10.1038/nature09913

Indications of radiation damage in ferredoxin microcrystals using high-intensity X-FEL beams
journal, February 2015

  • Nass, Karol; Foucar, Lutz; Barends, Thomas R. M.
  • Journal of Synchrotron Radiation, Vol. 22, Issue 2
  • DOI: 10.1107/S1600577515002349

Coherent X-Ray Raman Spectroscopy: A Nonlinear Local Probe for Electronic Excitations
journal, July 2002


Binuclear TiOMn charge-transfer chromophore in mesoporous silica
journal, January 2009

  • Wu, Xiuni; Weare, Walter W.; Frei, Heinz
  • Dalton Transactions, Issue 45
  • DOI: 10.1039/b915946k

Photon-in photon-out hard X-ray spectroscopy at the Linac Coherent Light Source
journal, April 2015

  • Alonso-Mori, Roberto; Sokaras, Dimosthenis; Zhu, Diling
  • Journal of Synchrotron Radiation, Vol. 22, Issue 3
  • DOI: 10.1107/S1600577515004488

Atomic inner-shell X-ray laser at 1.46 nanometres pumped by an X-ray free-electron laser
journal, January 2012

  • Rohringer, Nina; Ryan, Duncan; London, Richard A.
  • Nature, Vol. 481, Issue 7382
  • DOI: 10.1038/nature10721

Simultaneous Femtosecond X-ray Spectroscopy and Diffraction of Photosystem II at Room Temperature
journal, February 2013


Reabsorption of Soft X-Ray Emission at High X-Ray Free-Electron Laser Fluences
journal, October 2014


COOPERATION OF CHARGES IN PHOTOSYNTHETIC O 2 EVOLUTION–I. A LINEAR FOUR STEP MECHANISM
journal, June 1970


Rapid X-ray Photoreduction of Dimetal-Oxygen Cofactors in Ribonucleotide Reductase
journal, February 2013

  • Sigfridsson, Kajsa G. V.; Chernev, Petko; Leidel, Nils
  • Journal of Biological Chemistry, Vol. 288, Issue 14
  • DOI: 10.1074/jbc.M112.438796

Picosecond Time-Resolved X-Ray Emission Spectroscopy: Ultrafast Spin-State Determination in an Iron Complex
journal, July 2010

  • Vankó, György; Glatzel, Pieter; Pham, Van-Thai
  • Angewandte Chemie International Edition, Vol. 49, Issue 34
  • DOI: 10.1002/anie.201000844

Orbital-specific mapping of the ligand exchange dynamics of Fe(CO)5 in solution
journal, April 2015


Protein ligation of the photosynthetic oxygen-evolving center
journal, February 2008


Quaternary Ammonium Oxidative Demethylation: X-ray Crystallographic, Resonance Raman, and UV–Visible Spectroscopic Analysis of a Rieske-Type Demethylase
journal, January 2012

  • Daughtry, Kelly D.; Xiao, Youli; Stoner-Ma, Deborah
  • Journal of the American Chemical Society, Vol. 134, Issue 5
  • DOI: 10.1021/ja2111898

Stimulated Electronic X-Ray Raman Scattering
journal, December 2013


Energy-dispersive X-ray emission spectroscopy using an X-ray free-electron laser in a shot-by-shot mode
journal, November 2012

  • Alonso-Mori, R.; Kern, J.; Gildea, R. J.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 47, p. 19103-19107
  • DOI: 10.1073/pnas.1211384109

Accessing protein conformational ensembles using room-temperature X-ray crystallography
journal, September 2011

  • Fraser, J. S.; van den Bedem, H.; Samelson, A. J.
  • Proceedings of the National Academy of Sciences, Vol. 108, Issue 39
  • DOI: 10.1073/pnas.1111325108

Photosynthetic O2 Formation Tracked by Time-Resolved X-ray Experiments
journal, November 2005


How fast can Photosystem II split water? Kinetic performance at high and low frequencies
journal, June 2005


Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers
journal, March 2014

  • Hattne, Johan; Echols, Nathaniel; Tran, Rosalie
  • Nature Methods, Vol. 11, Issue 5
  • DOI: 10.1038/nmeth.2887

L-Edge X-ray Absorption Spectroscopy of Dilute Systems Relevant to Metalloproteins Using an X-ray Free-Electron Laser
journal, October 2013

  • Mitzner, Rolf; Rehanek, Jens; Kern, Jan
  • The Journal of Physical Chemistry Letters, Vol. 4, Issue 21
  • DOI: 10.1021/jz401837f

Electron paramagnetic resonance kinetic studies of the S states in spinach PSII membranes
journal, December 1997

  • Reza Razeghifard, M.; Pace, Ronald J.
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1322, Issue 2-3
  • DOI: 10.1016/S0005-2728(97)00069-8

Works referencing / citing this record:

Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers
journal, February 2017

  • Fuller, Franklin D.; Gul, Sheraz; Chatterjee, Ruchira
  • Nature Methods, Vol. 14, Issue 4
  • DOI: 10.1038/nmeth.4195

A high-throughput energy-dispersive tender X-ray spectrometer for shot-to-shot sulfur measurements
journal, April 2019

  • Abraham, Baxter; Nowak, Stanislaw; Weninger, Clemens
  • Journal of Synchrotron Radiation, Vol. 26, Issue 3
  • DOI: 10.1107/s1600577519002431