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Title: Structure of photosystem II and substrate binding at room temperature

Authors:
 [1];  [2];  [1];  [1];  [1];  [3];  [1];  [1];  [4];  [5];  [1];  [6];  [7];  [6];  [2];  [2];  [1];  [8];  [3];  [3] more »;  [3];  [3];  [3];  [1];  [1];  [2];  [9];  [9];  [1];  [6];  [6];  [1];  [10];  [11];  [11];  [12];  [11];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [4];  [13];  [13];  [1];  [1];  [1];  [14];  [11];  [8];  [2];  [15];  [16];  [1];  [17];  [2];  [18];  [6];  [1];  [19];  [1];  [1] « less
+ Show Author Affiliations
  1. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Molecular Biophysics and Integrated Bioimaging Division
  2. Humboldt Univ. of Berlin (Germany). Institute of Biology
  3. Umea University (Sweden). Institutionen for Kemi, Kemiskt Biologiskt Centrum
  4. SLAC National Accelerator Lab., Menlo Park, CA (United States). Linac Coherent Light Source (LCLS)
  5. SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Institute and SSRL
  6. SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Institute
  7. SLAC National Accelerator Lab., Menlo Park, CA (United States). Linac Coherent Light Source (LCLS) and Stanford PULSE Institute
  8. Institute for Methods and Instrumentation on Synchrotron Radiation Research, Helmholtz Zentrum, Berlin (Germany)
  9. SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
  10. Univ. of Oxford (United Kingdom). Department of Biochemistry; Diamond Light Source Ltd, Harwell Science and Innovation Campus (United Kingdom)
  11. Diamond Light Source Ltd, Harwell Science and Innovation Campus (United Kingdom)
  12. Brookhaven National Lab. (BNL), Upton, NY (United States). National Synchrotron Light Source II (NSLS-II)
  13. Stanford Univ., CA (United States). Department of Molecular and Cellular Physiology and Howard Hughes Medical Institute
  14. STFC Rutherford Appleton Laboratory (United Kingdom). CCP4, Research Complex at Harwell
  15. Stanford Univ., CA (United States). Department of Molecular and Cellular Physiology, Department of Photon Science, and Department of Structural Biology
  16. Stanford Univ., CA (United States). Department of Molecular and Cellular Physiology, Howard Hughes Medical Institute, Department of Photon Science, and Department of Structural Biology
  17. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Molecular Biophysics and Integrated Bioimaging Division; Univ. of California, Berkeley, CA (United States). Department of Bioengineering
  18. Umea University (Sweden). Institutionen for Kemi, Kemiskt Biologiskt Centrum; Ångström Laboratory, Uppsala University (Sweden). Department of Chemistry, Molecular Biomimetics
  19. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Molecular Biophysics and Integrated Bioimaging Division; SLAC National Accelerator Lab., Menlo Park, CA (United States). Linac Coherent Light Source (LCLS)
Publication Date:
Research Org.:
Brookhaven National Laboratory (BNL), Upton, NY (United States); SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1376142
Alternate Identifier(s):
OSTI ID: 1361141
Report Number(s):
BNL-114083-2017-JA
Journal ID: ISSN 0028-0836
Grant/Contract Number:  
SC0012704; AC02-05CH11231; AC02-76SF00515
Resource Type:
Accepted Manuscript
Journal Name:
Nature (London)
Additional Journal Information:
Journal Name: Nature (London); Journal Volume: 540; Journal Issue: 7633; Journal ID: ISSN 0028-0836
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Young, Iris D., Ibrahim, Mohamed, Chatterjee, Ruchira, Gul, Sheraz, Fuller, Franklin D., Koroidov, Sergey, Brewster, Aaron S., Tran, Rosalie, Alonso-Mori, Roberto, Kroll, Thomas, Michels-Clark, Tara, Laksmono, Hartawan, Sierra, Raymond G., Stan, Claudiu A., Hussein, Rana, Zhang, Miao, Douthit, Lacey, Kubin, Markus, de Lichtenberg, Casper, Vo Pham, Long, Nilsson, Håkan, Cheah, Mun Hon, Shevela, Dmitriy, Saracini, Claudio, Bean, Mackenzie A., Seuffert, Ina, Sokaras, Dimosthenis, Weng, Tsu-Chien, Pastor, Ernest, Weninger, Clemens, Fransson, Thomas, Lassalle, Louise, Bräuer, Philipp, Aller, Pierre, Docker, Peter T., Andi, Babak, Orville, Allen M., Glownia, James M., Nelson, Silke, Sikorski, Marcin, Zhu, Diling, Hunter, Mark S., Lane, Thomas J., Aquila, Andy, Koglin, Jason E., Robinson, Joseph, Liang, Mengning, Boutet, Sébastien, Lyubimov, Artem Y., Uervirojnangkoorn, Monarin, Moriarty, Nigel W., Liebschner, Dorothee, Afonine, Pavel V., Waterman, David G., Evans, Gwyndaf, Wernet, Philippe, Dobbek, Holger, Weis, William I., Brunger, Axel T., Zwart, Petrus H., Adams, Paul D., Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Sauter, Nicholas K., Kern, Jan, Yachandra, Vittal K., and Yano, Junko. Structure of photosystem II and substrate binding at room temperature. United States: N. p., 2016. Web. doi:10.1038/nature20161.
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Young, Iris D., Ibrahim, Mohamed, Chatterjee, Ruchira, Gul, Sheraz, Fuller, Franklin D., Koroidov, Sergey, Brewster, Aaron S., Tran, Rosalie, Alonso-Mori, Roberto, Kroll, Thomas, Michels-Clark, Tara, Laksmono, Hartawan, Sierra, Raymond G., Stan, Claudiu A., Hussein, Rana, Zhang, Miao, Douthit, Lacey, Kubin, Markus, de Lichtenberg, Casper, Vo Pham, Long, Nilsson, Håkan, Cheah, Mun Hon, Shevela, Dmitriy, Saracini, Claudio, Bean, Mackenzie A., Seuffert, Ina, Sokaras, Dimosthenis, Weng, Tsu-Chien, Pastor, Ernest, Weninger, Clemens, Fransson, Thomas, Lassalle, Louise, Bräuer, Philipp, Aller, Pierre, Docker, Peter T., Andi, Babak, Orville, Allen M., Glownia, James M., Nelson, Silke, Sikorski, Marcin, Zhu, Diling, Hunter, Mark S., Lane, Thomas J., Aquila, Andy, Koglin, Jason E., Robinson, Joseph, Liang, Mengning, Boutet, Sébastien, Lyubimov, Artem Y., Uervirojnangkoorn, Monarin, Moriarty, Nigel W., Liebschner, Dorothee, Afonine, Pavel V., Waterman, David G., Evans, Gwyndaf, Wernet, Philippe, Dobbek, Holger, Weis, William I., Brunger, Axel T., Zwart, Petrus H., Adams, Paul D., Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Sauter, Nicholas K., Kern, Jan, Yachandra, Vittal K., & Yano, Junko. Structure of photosystem II and substrate binding at room temperature. United States. https://doi.org/10.1038/nature20161
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Young, Iris D., Ibrahim, Mohamed, Chatterjee, Ruchira, Gul, Sheraz, Fuller, Franklin D., Koroidov, Sergey, Brewster, Aaron S., Tran, Rosalie, Alonso-Mori, Roberto, Kroll, Thomas, Michels-Clark, Tara, Laksmono, Hartawan, Sierra, Raymond G., Stan, Claudiu A., Hussein, Rana, Zhang, Miao, Douthit, Lacey, Kubin, Markus, de Lichtenberg, Casper, Vo Pham, Long, Nilsson, Håkan, Cheah, Mun Hon, Shevela, Dmitriy, Saracini, Claudio, Bean, Mackenzie A., Seuffert, Ina, Sokaras, Dimosthenis, Weng, Tsu-Chien, Pastor, Ernest, Weninger, Clemens, Fransson, Thomas, Lassalle, Louise, Bräuer, Philipp, Aller, Pierre, Docker, Peter T., Andi, Babak, Orville, Allen M., Glownia, James M., Nelson, Silke, Sikorski, Marcin, Zhu, Diling, Hunter, Mark S., Lane, Thomas J., Aquila, Andy, Koglin, Jason E., Robinson, Joseph, Liang, Mengning, Boutet, Sébastien, Lyubimov, Artem Y., Uervirojnangkoorn, Monarin, Moriarty, Nigel W., Liebschner, Dorothee, Afonine, Pavel V., Waterman, David G., Evans, Gwyndaf, Wernet, Philippe, Dobbek, Holger, Weis, William I., Brunger, Axel T., Zwart, Petrus H., Adams, Paul D., Zouni, Athina, Messinger, Johannes, Bergmann, Uwe, Sauter, Nicholas K., Kern, Jan, Yachandra, Vittal K., and Yano, Junko. Mon . "Structure of photosystem II and substrate binding at room temperature". United States. https://doi.org/10.1038/nature20161. https://www.osti.gov/servlets/purl/1376142.
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@article{osti_1376142,
title = {Structure of photosystem II and substrate binding at room temperature},
author = {Young, Iris D. and Ibrahim, Mohamed and Chatterjee, Ruchira and Gul, Sheraz and Fuller, Franklin D. and Koroidov, Sergey and Brewster, Aaron S. and Tran, Rosalie and Alonso-Mori, Roberto and Kroll, Thomas and Michels-Clark, Tara and Laksmono, Hartawan and Sierra, Raymond G. and Stan, Claudiu A. and Hussein, Rana and Zhang, Miao and Douthit, Lacey and Kubin, Markus and de Lichtenberg, Casper and Vo Pham, Long and Nilsson, Håkan and Cheah, Mun Hon and Shevela, Dmitriy and Saracini, Claudio and Bean, Mackenzie A. and Seuffert, Ina and Sokaras, Dimosthenis and Weng, Tsu-Chien and Pastor, Ernest and Weninger, Clemens and Fransson, Thomas and Lassalle, Louise and Bräuer, Philipp and Aller, Pierre and Docker, Peter T. and Andi, Babak and Orville, Allen M. and Glownia, James M. and Nelson, Silke and Sikorski, Marcin and Zhu, Diling and Hunter, Mark S. and Lane, Thomas J. and Aquila, Andy and Koglin, Jason E. and Robinson, Joseph and Liang, Mengning and Boutet, Sébastien and Lyubimov, Artem Y. and Uervirojnangkoorn, Monarin and Moriarty, Nigel W. and Liebschner, Dorothee and Afonine, Pavel V. and Waterman, David G. and Evans, Gwyndaf and Wernet, Philippe and Dobbek, Holger and Weis, William I. and Brunger, Axel T. and Zwart, Petrus H. and Adams, Paul D. and Zouni, Athina and Messinger, Johannes and Bergmann, Uwe and Sauter, Nicholas K. and Kern, Jan and Yachandra, Vittal K. and Yano, Junko},
abstractNote = {},
doi = {10.1038/nature20161},
journal = {Nature (London)},
number = 7633,
volume = 540,
place = {United States},
year = {Mon Nov 21 00:00:00 EST 2016},
month = {Mon Nov 21 00:00:00 EST 2016}
}
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The New Macromolecular Femtosecond Crystallography (MFX) Instrument at LCLS
journal, January 2016

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    A Gas‐Phase Ca n Mn 4− n O 4 + Cluster Model for the Oxygen‐Evolving Complex of Photosystem II
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    • Mauthe, Silvia; Fleischer, Irene; Bernhardt, Thorsten M.
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    • DOI: 10.1002/adfm.201805521

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    • Fuller, Franklin D.; Gul, Sheraz; Chatterjee, Ruchira
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    • DOI: 10.1038/nmeth.4195

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    Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals
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    • Casadei, Cecilia M.; Nass, Karol; Barty, Anton
    • Deutsches Elektronen-Synchrotron, DESY, Hamburg
    • DOI: 10.3204/pubdb-2018-04823

    A synthetic manganese–calcium cluster similar to the catalyst of Photosystem II: challenges for biomimetic water oxidation
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    • Mousazade, Younes; Mohammadi, Mohammad Reza; Bagheri, Robabeh
    • Dalton Transactions
    • DOI: 10.1039/d0dt00536c

    Temperature dependence of protein-water interactions in a gated yeast aquaporin
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    Structures of the intermediates of Kok’s photosynthetic water oxidation clock
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    Perspective: Opportunities for ultrafast science at SwissFEL
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    On the photocatalytic cycle of water splitting with small manganese oxides and the roles of water clusters as direct sources of oxygen molecules
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    • DOI: 10.1039/c7cp07171j

    Multi-wavelength anomalous diffraction de novo phasing using a two-colour X-ray free-electron laser with wide tunability
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    International conference on “Photosynthesis and Hydrogen Energy Research for Sustainability-2019”: in honor of Tingyun Kuang, Anthony Larkum, Cesare Marchetti, and Kimiyuki Satoh
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    • Borisova-Mubarakshina, Maria M.; Tsygankov, Anatoly A.; Tomo, Tatsuya
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    • DOI: 10.1007/s11120-019-00687-w

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    • DOI: 10.1063/1.4979640

    Unequal misses during the flash-induced advancement of photosystem II: effects of the S state and acceptor side cycles
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    • Pham, Long Vo; Janna Olmos, Julian David; Chernev, Petko
    • Photosynthesis Research, Vol. 139, Issue 1-3
    • DOI: 10.1007/s11120-018-0574-0

    Perspective: Opportunities for ultrafast science at SwissFEL
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    Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate
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    • Tosha, Takehiko; Nomura, Takashi; Nishida, Takuma
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    • DOI: 10.1063/1.4997222

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    • Shevela, Dmitry; Ananyev, Gennady; Vatland, Ann K.
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    Evolution from S 3 to S 4 States of the Oxygen-Evolving Complex in Photosystem II Monitored by Quantum Mechanics/Molecular Mechanics (QM/MM) Dynamics
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    • DOI: 10.1002/chem.201801709

    D1-Asn-298 in photosystem II is involved in a hydrogen-bond network near the redox-active tyrosine Y Z for proton exit during water oxidation
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    • Nagao, Ryo; Ueoka-Nakanishi, Hanayo; Noguchi, Takumi
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    Multi-wavelength anomalous diffraction de novo phasing using a two-colour X-ray free-electron laser with wide tunability
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    • DOI: 10.1039/c8cy01151f

    Unequal misses during the flash-induced advancement of photosystem II: effects of the S state and acceptor side cycles
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    • Pham, Long Vo; Janna Olmos, Julian David; Chernev, Petko
    • Photosynthesis Research, Vol. 139, Issue 1-3
    • DOI: 10.1007/s11120-018-0574-0

    Perspective: Opportunities for ultrafast science at SwissFEL
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    Local Structural Modification of Ca2+-Depleted Photosystem II Detected by Proton Matrix ENDOR
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    Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals
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    Structural isomers of the S 2 state in photosystem II: do they exist at room temperature and are they important for function?
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    Dynamic pH‐induced conformational changes of the PsbO protein in the fluctuating acidity of the thylakoid lumen
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    Hydrophilicity and oxophilicity of the isolated CaMn 4 O 5 cationic cluster modeling inorganic core of the oxygen-evolving complex
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    Short-wavelength free-electron laser sources and science: a review
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    • DOI: 10.3204/pubdb-2018-00596

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    Sample delivery for serial crystallography at free-electron lasers and synchrotrons
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    Capturing an initial intermediate during the P450nor enzymatic reaction using time-resolved XFEL crystallography and caged-substrate
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    Radiation damage in protein crystallography at X-ray free-electron lasers
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    The Macromolecular Femtosecond Crystallography Instrument at the Linac Coherent Light Source
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    • DOI: 10.1107/s1600577519001577

    Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex
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    Significance of hydrogen bonding networks in the proton-coupled electron transfer reactions of photosystem II from a quantum-mechanics perspective
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    • DOI: 10.1007/978-981-15-1584-2_6

    Artificial photosynthesis – concluding remarks
    journal, January 2019

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