Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.
Abstract
© 2015 Billings et al. Tolumonas lignolytica BRL6-1 T sp. nov. is the type strain of T. lignolytica sp. nov., a proposed novel species of the Tolumonas genus. This strain was isolated from tropical rainforest soils based on its ability to utilize lignin as a sole carbon source. Cells of Tolumonas lignolytica BRL6-1 T are mesophilic, non-spore forming, Gram-negative rods that are oxidase and catalase negative. The genome for this isolate was sequenced and returned in seven unique contigs totaling 3.6Mbp, enabling the characterization of several putative pathways for lignin breakdown. Particularly, we found an extracellular peroxidase involved in lignin depolymerization, as well as several enzymes involved in β-aryl ether bond cleavage, which is the most abundant linkage between lignin monomers. We also found genes for enzymes involved in ferulic acid metabolism, which is a common product of lignin breakdown. By characterizing pathways and enzymes employed in the bacterial breakdown of lignin in anaerobic environments, this work should assist in the efficient engineering of biofuel production from lignocellulosic material.
- Authors:
-
- Univ. of Massachusetts, Amherst, MA (United States)
- Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States); Univ. of Tennessee, Knoxville, TN (United States). Dept. of Civil & Environmental Engineering
- Univ. of Tennessee, Knoxville, TN (United States). Dept. of Civil & Environmental Engineering; Univ. of Tennessee, Knoxville, TN (United States). Dept. of Microbiology; Univ. of Tennessee, Knoxville, TN (United States). Dept. of Earth & Planetary Sciences
- Joint BioEnergy Inst. (JBEI), Emeryville, CA (United States); Sandia National Lab. (SNL-CA), Livermore, CA (United States)
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Publication Date:
- Research Org.:
- Los Alamos National Laboratory (LANL), Los Alamos, NM (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1259501
- Alternate Identifier(s):
- OSTI ID: 1378652
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Anaerobic lignin degradation; Tropical forest soil isolate; Tolumonas
Citation Formats
Billings, Andrew F., Fortney, Julian L., Hazen, Terry C., Simmons, Blake, Davenport, Karen W., Goodwin, Lynne, Ivanova, Natalia, Kyrpides, Nikos C., Mavromatis, Konstantinos, Woyke, Tanja, and DeAngelis, Kristen M. Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.. United States: N. p., 2015.
Web. doi:10.1186/s40793-015-0100-3.
Billings, Andrew F., Fortney, Julian L., Hazen, Terry C., Simmons, Blake, Davenport, Karen W., Goodwin, Lynne, Ivanova, Natalia, Kyrpides, Nikos C., Mavromatis, Konstantinos, Woyke, Tanja, & DeAngelis, Kristen M. Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.. United States. https://doi.org/10.1186/s40793-015-0100-3
Billings, Andrew F., Fortney, Julian L., Hazen, Terry C., Simmons, Blake, Davenport, Karen W., Goodwin, Lynne, Ivanova, Natalia, Kyrpides, Nikos C., Mavromatis, Konstantinos, Woyke, Tanja, and DeAngelis, Kristen M. Thu .
"Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.". United States. https://doi.org/10.1186/s40793-015-0100-3. https://www.osti.gov/servlets/purl/1259501.
@article{osti_1259501,
title = {Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.},
author = {Billings, Andrew F. and Fortney, Julian L. and Hazen, Terry C. and Simmons, Blake and Davenport, Karen W. and Goodwin, Lynne and Ivanova, Natalia and Kyrpides, Nikos C. and Mavromatis, Konstantinos and Woyke, Tanja and DeAngelis, Kristen M.},
abstractNote = {© 2015 Billings et al. Tolumonas lignolytica BRL6-1 T sp. nov. is the type strain of T. lignolytica sp. nov., a proposed novel species of the Tolumonas genus. This strain was isolated from tropical rainforest soils based on its ability to utilize lignin as a sole carbon source. Cells of Tolumonas lignolytica BRL6-1 T are mesophilic, non-spore forming, Gram-negative rods that are oxidase and catalase negative. The genome for this isolate was sequenced and returned in seven unique contigs totaling 3.6Mbp, enabling the characterization of several putative pathways for lignin breakdown. Particularly, we found an extracellular peroxidase involved in lignin depolymerization, as well as several enzymes involved in β-aryl ether bond cleavage, which is the most abundant linkage between lignin monomers. We also found genes for enzymes involved in ferulic acid metabolism, which is a common product of lignin breakdown. By characterizing pathways and enzymes employed in the bacterial breakdown of lignin in anaerobic environments, this work should assist in the efficient engineering of biofuel production from lignocellulosic material.},
doi = {10.1186/s40793-015-0100-3},
journal = {Standards in Genomic Sciences},
number = 1,
volume = 10,
place = {United States},
year = {Thu Nov 19 00:00:00 EST 2015},
month = {Thu Nov 19 00:00:00 EST 2015}
}
Web of Science
Works referenced in this record:
Natural paradigms of plant cell wall degradation
journal, June 2009
- Wei, Hui; Xu, Qi; Taylor, Larry E.
- Current Opinion in Biotechnology, Vol. 20, Issue 3
Studies on dissimilatory sulfate-reducing bacteria that decompose fatty acids: III. Characterization of the filamentous gliding Desulfonema limicola gen. nov. sp. nov., and Desulfonema magnum sp. nov.
journal, July 1983
- Widdel, Friedrich; Kohring, Gert-Wieland; Mayer, Frank
- Archives of Microbiology, Vol. 134, Issue 4
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
journal, December 2010
- Gnerre, S.; MacCallum, I.; Przybylski, D.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 4
The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse
journal, October 2006
- McLeod, M. P.; Warren, R. L.; Hsiao, W. W. L.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 42, p. 15582-15587
Gene Ontology: tool for the unification of biology
journal, May 2000
- Ashburner, Michael; Ball, Catherine A.; Blake, Judith A.
- Nature Genetics, Vol. 25, Issue 1
Methane production from lignocellulosic agricultural crop wastes: A review in context to second generation of biofuel production
journal, April 2012
- Chandra, R.; Takeuchi, H.; Hasegawa, T.
- Renewable and Sustainable Energy Reviews, Vol. 16, Issue 3
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
journal, June 1990
- Woese, C. R.; Kandler, O.; Wheelis, M. L.
- Proceedings of the National Academy of Sciences, Vol. 87, Issue 12
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
journal, March 1997
- Lowe, Todd M.; Eddy, Sean R.
- Nucleic Acids Research, Vol. 25, Issue 5
Genome sequence-based species delimitation with confidence intervals and improved distance functions
journal, January 2013
- Meier-Kolthoff, Jan P.; Auch, Alexander F.; Klenk, Hans-Peter
- BMC Bioinformatics, Vol. 14, Issue 1
IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011
- Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
- Nucleic Acids Research, Vol. 40, Issue D1
Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010
- Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F.
- BMC Bioinformatics, Vol. 11, Issue 1
Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds
journal, October 1999
- Masai, E.; Katayama, Y.; Nishikawa, S.
- Journal of Industrial Microbiology and Biotechnology, Vol. 23, Issue 4-5
Ori-Finder: A web-based system for finding oriC s in unannotated bacterial genomes
journal, February 2008
- Gao, Feng; Zhang, Chun-Ting
- BMC Bioinformatics, Vol. 9, Issue 1
Complete genome sequence of “Enterobacter lignolyticus” SCF1
journal, September 2011
- DeAngelis, Kristen M.; D’Haeseleer, Patrik; Chivian, Dylan
- Standards in Genomic Sciences, Vol. 5, Issue 1
The COG database: a tool for genome-scale analysis of protein functions and evolution
journal, January 2000
- Tatusov, R. L.
- Nucleic Acids Research, Vol. 28, Issue 1
The β-Ketoadipate Pathway And The Biology Of Self-Identity
journal, October 1996
- Harwood, Caroline S.; Parales, Rebecca E.
- Annual Review of Microbiology, Vol. 50, Issue 1, p. 553-590
DoriC 5.0: an updated database of oriC regions in both bacterial and archaeal genomes
journal, October 2012
- Gao, Feng; Luo, Hao; Zhang, Chun-Ting
- Nucleic Acids Research, Vol. 41, Issue D1
Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds
journal, January 2007
- Masai, Eiji; Katayama, Yoshihiro; Fukuda, Masao
- Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 1
Microbial communities acclimate to recurring changes in soil redox potential status: Fluctuating redox microbial communities
journal, December 2010
- DeAngelis, Kristen M.; Silver, Whendee L.; Thompson, Andrew W.
- Environmental Microbiology, Vol. 12, Issue 12
The emerging role for bacteria in lignin degradation and bio-product formation
journal, June 2011
- Bugg, Timothy DH; Ahmad, Mark; Hardiman, Elizabeth M.
- Current Opinion in Biotechnology, Vol. 22, Issue 3
Living in a fungal world: impact of fungi on soil bacterial niche development
journal, September 2005
- Boer, Wietse de; Folman, Larissa B.; Summerbell, Richard C.
- FEMS Microbiology Reviews, Vol. 29, Issue 4
Global-Scale Similarities in Nitrogen Release Patterns During Long-Term Decomposition
journal, January 2007
- Parton, W.; Silver, W. L.; Burke, I. C.
- Science, Vol. 315, Issue 5810
Tolumonas auensis gen. nov., sp. nov., a Toluene-Producing Bacterium from Anoxic Sediments of a Freshwater Lake
journal, January 1996
- Fischer-Romero, C.; Tindall, B. J.; Juttner, F.
- International Journal of Systematic Bacteriology, Vol. 46, Issue 1
Lignin degradation in wood-feeding insects
journal, August 2008
- Geib, S. M.; Filley, T. R.; Hatcher, P. G.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 35
Pathways for degradation of lignin in bacteria and fungi
journal, January 2011
- Bugg, Timothy D. H.; Ahmad, Mark; Hardiman, Elizabeth M.
- Natural Product Reports, Vol. 28, Issue 12, p. 1883-1896
Confidence Limits on Phylogenies: An Approach Using the Bootstrap
journal, July 1985
- Felsenstein, Joseph
- Evolution, Vol. 39, Issue 4, p. 783-791
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
journal, November 2007
- Pruesse, E.; Quast, C.; Knittel, K.
- Nucleic Acids Research, Vol. 35, Issue 21
PATRIC, the bacterial bioinformatics database and analysis resource
journal, November 2013
- Wattam, Alice R.; Abraham, David; Dalay, Oral
- Nucleic Acids Research, Vol. 42, Issue D1
An enzymic 'latch' on a global carbon store
journal, January 2001
- Freeman, Chris; Ostle, Nick; Kang, Hojeong
- Nature, Vol. 409, Issue 6817
Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8
journal, January 2013
- Shi, Yan; Chai, Liyuan; Tang, Chongjian
- Biotechnology for Biofuels, Vol. 6, Issue 1
The minimum information about a genome sequence (MIGS) specification
journal, May 2008
- Field, Dawn; Garrity, George; Gray, Tanya
- Nature Biotechnology, Vol. 26, Issue 5
Tolumonas osonensis sp. nov., isolated from anoxic freshwater sediment, and emended description of the genus Tolumonas
journal, December 2010
- Caldwell, M. E.; Allen, T. D.; Lawson, P. A.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 11
Infernal 1.1: 100-fold faster RNA homology searches
journal, September 2013
- Nawrocki, E. P.; Eddy, S. R.
- Bioinformatics, Vol. 29, Issue 22
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
journal, October 2013
- Tamura, Koichiro; Stecher, Glen; Peterson, Daniel
- Molecular Biology and Evolution, Vol. 30, Issue 12
IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009
- Markowitz, Victor M.; Mavromatis, Konstantinos; Ivanova, Natalia N.
- Bioinformatics, Vol. 25, Issue 17
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007
- Klappenbach, Joel A.; Goris, Johan; Vandamme, Peter
- International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 1
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
journal, May 2010
- Pati, Amrita; Ivanova, Natalia N.; Mikhailova, Natalia
- Nature Methods, Vol. 7, Issue 6
Use of Field-Based Stable Isotope Probing To Identify Adapted Populations and Track Carbon Flow through a Phenol-Degrading Soil Microbial Community
journal, December 2005
- DeRito, C. M.; Pumphrey, G. M.; Madsen, E. L.
- Applied and Environmental Microbiology, Vol. 71, Issue 12
Growth yield increase linked to caffeate reduction in Acetobacterium woodii
journal, February 1984
- Tschech, Andreas; Pfennig, Norbert
- Archives of Microbiology, Vol. 137, Issue 2
Identification of replication origins in archaeal genomes based on the Z -curve method
journal, January 2005
- Zhang, Ren; Zhang, Chun-Ting
- Archaea, Vol. 1, Issue 5
Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil.
journal, January 1997
- Janssen, P. H.; Schuhmann, A.; Mörschel, E.
- Applied and environmental microbiology, Vol. 63, Issue 4
Enteric pathogens and soil: a short review
journal, March 2003
- Santamaría, Johanna; Toranzos, Gary A.
- International Microbiology, Vol. 6, Issue 1
Class V. Epsilonproteobacteria class. nov.
book, January 2005
- Garrity, George M.; Bell, Julia A.; Lilburn, Timothy
- Bergey’s Manual® of Systematic Bacteriology
Aeromonadales ord. nov.
book, January 2005
- Martin-Carnahan, Amy; Joseph, Samuel W.
- Bergey’s Manual® of Systematic Bacteriology
Confidence Limits on Phylogenies: an Approach Using the Bootstrap
journal, July 1985
- Felsenstein, Joseph
- Evolution, Vol. 39, Issue 4
Acetylene-Fueled Trichloroethene Reductive Dechlorination in a Groundwater Enrichment Culture
journal, February 2021
- Gushgari-Doyle, Sara; Oremland, Ronald S.; Keren, Ray
- mBio, Vol. 12, Issue 1
Evolution of Protein Molecules
journal, April 1979
- Jeffery, S.
- Biochemical Society Transactions, Vol. 7, Issue 2
Sphingopyxis jiangsuensis sp. nov. Isolated From the Surface Water of the Yellow Sea
journal, June 2022
- Gao, Zeng-Yu; Xue, Hua-Peng; Wang, Lu
- Current Microbiology, Vol. 79, Issue 7
Genetic diversity of Amomum xanthioides and its related species from Southeast Asia and China
journal, May 2021
- Sone, Mikako; Zhu, Shu; Cheng, Xiao
- Journal of Natural Medicines, Vol. 75, Issue 4
Natural paradigms of plant cell wall degradation
journal, June 2009
- Wei, Hui; Xu, Qi; Taylor, Larry E.
- Current Opinion in Biotechnology, Vol. 20, Issue 3
The emerging role for bacteria in lignin degradation and bio-product formation
journal, June 2011
- Bugg, Timothy DH; Ahmad, Mark; Hardiman, Elizabeth M.
- Current Opinion in Biotechnology, Vol. 22, Issue 3
Living in a fungal world: impact of fungi on soil bacterial niche development
journal, September 2005
- Boer, Wietse de; Folman, Larissa B.; Summerbell, Richard C.
- FEMS Microbiology Reviews, Vol. 29, Issue 4
Multiple replication origins of the archaeon Halobacterium species NRC-1
journal, March 2003
- Zhang, Ren; Zhang, Chun-Ting
- Biochemical and Biophysical Research Communications, Vol. 302, Issue 4
An enzymic 'latch' on a global carbon store
journal, January 2001
- Freeman, Chris; Ostle, Nick; Kang, Hojeong
- Nature, Vol. 409, Issue 6817
The minimum information about a genome sequence (MIGS) specification
journal, May 2008
- Field, Dawn; Garrity, George; Gray, Tanya
- Nature Biotechnology, Vol. 26, Issue 5
Dietary palmitic acid promotes a prometastatic memory via Schwann cells
journal, November 2021
- Pascual, Gloria; Domínguez, Diana; Elosúa-Bayes, Marc
- Nature, Vol. 599, Issue 7885
Characterization of Sphingomonas paucimobilis SYK-6 genes involved in degradation of lignin-related compounds
journal, October 1999
- Masai, E.; Katayama, Y.; Nishikawa, S.
- Journal of Industrial Microbiology and Biotechnology, Vol. 23, Issue 4-5
IMG ER: a system for microbial genome annotation expert review and curation
journal, June 2009
- Markowitz, Victor M.; Mavromatis, Konstantinos; Ivanova, Natalia N.
- Bioinformatics, Vol. 25, Issue 17
Infernal 1.1: 100-fold faster RNA homology searches
journal, September 2013
- Nawrocki, E. P.; Eddy, S. R.
- Bioinformatics, Vol. 29, Issue 22
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
journal, October 2013
- Tamura, Koichiro; Stecher, Glen; Peterson, Daniel
- Molecular Biology and Evolution, Vol. 30, Issue 12
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
journal, November 2007
- Pruesse, E.; Quast, C.; Knittel, K.
- Nucleic Acids Research, Vol. 35, Issue 21
IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011
- Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
- Nucleic Acids Research, Vol. 40, Issue D1
PATRIC, the bacterial bioinformatics database and analysis resource
journal, November 2013
- Wattam, Alice R.; Abraham, David; Dalay, Oral
- Nucleic Acids Research, Vol. 42, Issue D1
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
journal, July 1987
- Saitou, N.; Nei, M.
- Molecular Biology and Evolution, Vol. 4, Issue 4, p. 406-425
Tolumonas auensis gen. nov., sp. nov., a Toluene-Producing Bacterium from Anoxic Sediments of a Freshwater Lake
journal, January 1996
- Fischer-Romero, C.; Tindall, B. J.; Juttner, F.
- International Journal of Systematic Bacteriology, Vol. 46, Issue 1
Tolumonas osonensis sp. nov., isolated from anoxic freshwater sediment, and emended description of the genus Tolumonas
journal, December 2010
- Caldwell, M. E.; Allen, T. D.; Lawson, P. A.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 61, Issue 11
Microbial communities acclimate to recurring changes in soil redox potential status: Fluctuating redox microbial communities
journal, December 2010
- DeAngelis, Kristen M.; Silver, Whendee L.; Thompson, Andrew W.
- Environmental Microbiology, Vol. 12, Issue 12
Global-Scale Similarities in Nitrogen Release Patterns During Long-Term Decomposition
journal, January 2007
- Parton, W.; Silver, W. L.; Burke, I. C.
- Science, Vol. 315, Issue 5810
Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction.
journal, January 1990
- Wilson, K. H.; Blitchington, R. B.; Greene, R. C.
- Journal of Clinical Microbiology, Vol. 28, Issue 9
The β-Ketoadipate Pathway And The Biology Of Self-Identity
journal, October 1996
- Harwood, Caroline S.; Parales, Rebecca E.
- Annual Review of Microbiology, Vol. 50, Issue 1, p. 553-590
Identification of replication origins in archaeal genomes based on the Z -curve method
journal, January 2005
- Zhang, Ren; Zhang, Chun-Ting
- Archaea, Vol. 1, Issue 5
Genome sequence-based species delimitation with confidence intervals and improved distance functions
journal, January 2013
- Meier-Kolthoff, Jan P.; Auch, Alexander F.; Klenk, Hans-Peter
- BMC Bioinformatics, Vol. 14, Issue 1
Ori-Finder: A web-based system for finding oriC s in unannotated bacterial genomes
journal, February 2008
- Gao, Feng; Zhang, Chun-Ting
- BMC Bioinformatics, Vol. 9, Issue 1
Characterization and genomic analysis of kraft lignin biodegradation by the beta-proteobacterium Cupriavidus basilensis B-8
journal, January 2013
- Shi, Yan; Chai, Liyuan; Tang, Chongjian
- Biotechnology for Biofuels, Vol. 6, Issue 1
Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds
journal, January 2007
- Masai, Eiji; Katayama, Yoshihiro; Fukuda, Masao
- Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 1
Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1
journal, January 2013
- DeAngelis, Kristen M.; Sharma, Deepak; Varney, Rebecca
- Frontiers in Microbiology, Vol. 4
Works referencing / citing this record:
Mapping the diversity of microbial lignin catabolism: experiences from the eLignin database
journal, April 2019
- Brink, Daniel P.; Ravi, Krithika; Lidén, Gunnar
- Applied Microbiology and Biotechnology, Vol. 103, Issue 10
Exemplar Abstract for Tolumonas lignolytica (sic) Billings et al. 2016 and Tolumonas lignilytica corrig. Billings et al. 2016.
dataset, January 2016
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Tolumonas lignolytica (sic) Billings et al. 2016.
dataset, January 2016
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Nomenclature Abstract for Tolumonas lignilytica corrig. Billings et al. 2016.
dataset, January 2016
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Taxonomic Abstract for the species Tolumonas lignolytica (sic) Billings et al. 2016 and Tolumonas lignilytica corrig. Billings et al. 2016.
dataset, January 2016
- Parker, Charles Thomas; Garrity, George M.
- NamesforLife
Taxonomic Abstract for the genera Tolumonas Fischer-Romero et al. 1996 emend. Caldwell et al. 2011
dataset, January 2013
- Parker, Charles Thomas; Wigley, Sarah; Garrity, George M.
- NamesforLife
Mapping the diversity of microbial lignin catabolism: experiences from the eLignin database
journal, April 2019
- Brink, Daniel P.; Ravi, Krithika; Lidén, Gunnar
- Applied Microbiology and Biotechnology, Vol. 103, Issue 10
Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium
journal, October 2017
- Orellana, Roberto; Chaput, Gina; Markillie, Lye Meng
- PLOS ONE, Vol. 12, Issue 10
Microbial communities mediating algal detritus turnover under anaerobic conditions
posted_content, September 2016
- Morrison, Jessica M.; Murphy, Chelsea L.; Baker, Kristina
- PeerJ Preprints