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Title: Characterization and molecular simulation of lignin in Cyrene pretreatment of switchgrass

Abstract

Biomass-derived solvents have been proposed as a novel pathway in biorefining for the realization of biofuels and bioproducts derived from lignocellulosic biomass. Cyrene derived from cellulose has recently been shown to have a high potential as a green organic solvent for pretreating poplar biomass. However, due to its high dynamic viscosity nature, high Cyrene concentration could cause negative effects on the sugar release of the pretreated biomass as well as driving up the operational cost of the lignin recovery. In this study, we combine experimental and computational approaches to examine the impact of Cyrene pretreatment with reduced Cyrene concentration under mild conditions on switchgrass lignin. Our experimental studies indicated correlation between pretreatment condition and recovery and structure modification of lignin. Switchgrass lignin extracted by Cyrene pretreatment possessed high preservation of β-O-4 ether inter-unit linkage, which could provide versatility in the integration of downstream lignin valorization into the modern biorefinery industries. Molecular modeling examining the solvation of switchgrass lignin polymer and the disaggregation of low-molecular weight lignin aggregates under pretreatment conditions indicated that a preferential interaction exists between Cyrene and lignin, which likely drives lignin release, and that the disruption of inter-lignin contacts can be modulated as a non-monotonic function ofmore » Cyrene : water ratio. Further, while Cyrene–lignin interactions permit the solubilization of lignin, simulations with proxy reactive-species reveal that changes to the diffusion of these reactive proxies and their localization near linkage sites under Cyrene conditions may inhibit chemical processes. In conclusion, the results indicated that loss of pretreatment efficacy caused by low Cyrene concentration could be compensated by prolonged pretreatment time and high catalyst dosage.« less

Authors:
 [1];  [1];  [1]; ORCiD logo [2]; ORCiD logo [1]; ORCiD logo [3];  [1]; ORCiD logo [2]; ORCiD logo [3]; ORCiD logo [3]; ORCiD logo [2]
  1. University of Tennessee, Knoxville, TN (United States)
  2. University of Tennessee, Knoxville, TN (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
  3. Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Advanced Scientific Computing Research (ASCR)
OSTI Identifier:
2267627
Alternate Identifier(s):
OSTI ID: 2202491
Grant/Contract Number:  
AC05-00OR22725; ERCAP0025417
Resource Type:
Accepted Manuscript
Journal Name:
Green Chemistry
Additional Journal Information:
Journal Volume: 26; Journal Issue: 6; Journal ID: ISSN 1463-9262
Publisher:
Royal Society of Chemistry
Country of Publication:
United States
Language:
English
Subject:
09 BIOMASS FUELS

Citation Formats

Wang, Yun-Yan, Wang, Yunxuan, Liang, Luna, Smith, Micholas Dean, Meng, Xianzhi, Pu, Yunqiao, Mazarei, Mitra, Agarwal, Rupesh, Rukmani, Shalini J., Davison, Brian H., and Ragauskas, Arthur J. Characterization and molecular simulation of lignin in Cyrene pretreatment of switchgrass. United States: N. p., 2023. Web. doi:10.1039/d3gc02239k.
Wang, Yun-Yan, Wang, Yunxuan, Liang, Luna, Smith, Micholas Dean, Meng, Xianzhi, Pu, Yunqiao, Mazarei, Mitra, Agarwal, Rupesh, Rukmani, Shalini J., Davison, Brian H., & Ragauskas, Arthur J. Characterization and molecular simulation of lignin in Cyrene pretreatment of switchgrass. United States. https://doi.org/10.1039/d3gc02239k
Wang, Yun-Yan, Wang, Yunxuan, Liang, Luna, Smith, Micholas Dean, Meng, Xianzhi, Pu, Yunqiao, Mazarei, Mitra, Agarwal, Rupesh, Rukmani, Shalini J., Davison, Brian H., and Ragauskas, Arthur J. Wed . "Characterization and molecular simulation of lignin in Cyrene pretreatment of switchgrass". United States. https://doi.org/10.1039/d3gc02239k.
@article{osti_2267627,
title = {Characterization and molecular simulation of lignin in Cyrene pretreatment of switchgrass},
author = {Wang, Yun-Yan and Wang, Yunxuan and Liang, Luna and Smith, Micholas Dean and Meng, Xianzhi and Pu, Yunqiao and Mazarei, Mitra and Agarwal, Rupesh and Rukmani, Shalini J. and Davison, Brian H. and Ragauskas, Arthur J.},
abstractNote = {Biomass-derived solvents have been proposed as a novel pathway in biorefining for the realization of biofuels and bioproducts derived from lignocellulosic biomass. Cyrene derived from cellulose has recently been shown to have a high potential as a green organic solvent for pretreating poplar biomass. However, due to its high dynamic viscosity nature, high Cyrene concentration could cause negative effects on the sugar release of the pretreated biomass as well as driving up the operational cost of the lignin recovery. In this study, we combine experimental and computational approaches to examine the impact of Cyrene pretreatment with reduced Cyrene concentration under mild conditions on switchgrass lignin. Our experimental studies indicated correlation between pretreatment condition and recovery and structure modification of lignin. Switchgrass lignin extracted by Cyrene pretreatment possessed high preservation of β-O-4 ether inter-unit linkage, which could provide versatility in the integration of downstream lignin valorization into the modern biorefinery industries. Molecular modeling examining the solvation of switchgrass lignin polymer and the disaggregation of low-molecular weight lignin aggregates under pretreatment conditions indicated that a preferential interaction exists between Cyrene and lignin, which likely drives lignin release, and that the disruption of inter-lignin contacts can be modulated as a non-monotonic function of Cyrene : water ratio. Further, while Cyrene–lignin interactions permit the solubilization of lignin, simulations with proxy reactive-species reveal that changes to the diffusion of these reactive proxies and their localization near linkage sites under Cyrene conditions may inhibit chemical processes. In conclusion, the results indicated that loss of pretreatment efficacy caused by low Cyrene concentration could be compensated by prolonged pretreatment time and high catalyst dosage.},
doi = {10.1039/d3gc02239k},
journal = {Green Chemistry},
number = 6,
volume = 26,
place = {United States},
year = {Wed Oct 04 00:00:00 EDT 2023},
month = {Wed Oct 04 00:00:00 EDT 2023}
}

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Works referenced in this record:

A critical review on the analysis of lignin carbohydrate bonds
journal, January 2019

  • Giummarella, Nicola; Pu, Yunqiao; Ragauskas, Arthur J.
  • Green Chemistry, Vol. 21, Issue 7
  • DOI: 10.1039/C8GC03606C

A Mechanistic Investigation of Acid-Catalyzed Cleavage of Aryl-Ether Linkages: Implications for Lignin Depolymerization in Acidic Environments
journal, November 2013

  • Sturgeon, Matthew R.; Kim, Seonah; Lawrence, Kelsey
  • ACS Sustainable Chemistry & Engineering, Vol. 2, Issue 3, p. 472-485
  • DOI: 10.1021/sc400384w

Dihydrolevoglucosenone (Cyrene™) as a versatile biobased solvent for lignin fractionation, processing, and chemistry
journal, January 2022


Guidelines for performing lignin-first biorefining
journal, January 2021

  • Abu-Omar, Mahdi M.; Barta, Katalin; Beckham, Gregg T.
  • Energy & Environmental Science, Vol. 14, Issue 1
  • DOI: 10.1039/D0EE02870C

Cyrene™ is a green alternative to DMSO as a solvent for antibacterial drug discovery against ESKAPE pathogens
journal, January 2020

  • Camp, Jason E.; Nyamini, Simbarashe B.; Scott, Fraser J.
  • RSC Medicinal Chemistry, Vol. 11, Issue 1
  • DOI: 10.1039/C9MD00341J

Chemical and Morphological Structure of Transgenic Switchgrass Organosolv Lignin Extracted by Ethanol, Tetrahydrofuran, and γ-Valerolactone Pretreatments
journal, July 2022


Assessing the molecular structure basis for biomass recalcitrance during dilute acid and hydrothermal pretreatments
journal, January 2013


Canonical sampling through velocity rescaling
journal, January 2007

  • Bussi, Giovanni; Donadio, Davide; Parrinello, Michele
  • The Journal of Chemical Physics, Vol. 126, Issue 1
  • DOI: 10.1063/1.2408420

Switchgrass as an energy crop for biofuel production: A review of its ligno-cellulosic chemical properties
journal, January 2010

  • David, Kasi; Ragauskas, Arthur J.
  • Energy & Environmental Science, Vol. 3, Issue 9
  • DOI: 10.1039/b926617h

Differences in the content, composition and structure of the lignins from rind and pith of papyrus (Cyperus papyrus L.) culms
journal, December 2021


Cosolvent pretreatment in cellulosic biofuel production: effect of tetrahydrofuran-water on lignin structure and dynamics
journal, January 2016

  • Smith, Micholas Dean; Mostofian, Barmak; Cheng, Xiaolin
  • Green Chemistry, Vol. 18, Issue 5
  • DOI: 10.1039/C5GC01952D

Fast Fractionation of Technical Lignins by Organic Cosolvents
journal, March 2018


Molecular Lignin Solubility and Structure in Organic Solvents
journal, November 2020

  • Vermaas, Josh V.; Crowley, Michael F.; Beckham, Gregg T.
  • ACS Sustainable Chemistry & Engineering, Vol. 8, Issue 48
  • DOI: 10.1021/acssuschemeng.0c07156

Molecular dynamics with coupling to an external bath
journal, October 1984

  • Berendsen, H. J. C.; Postma, J. P. M.; van Gunsteren, W. F.
  • The Journal of Chemical Physics, Vol. 81, Issue 8
  • DOI: 10.1063/1.448118

Determination of hydroxyl groups in biorefinery resources via quantitative 31P NMR spectroscopy
journal, August 2019


Effect of in Vivo Deuteration on Structure of Switchgrass Lignin
journal, August 2017


Reductive lignocellulose fractionation into soluble lignin-derived phenolic monomers and dimers and processable carbohydrate pulps
journal, January 2015

  • Van den Bosch, S.; Schutyser, W.; Vanholme, R.
  • Energy & Environmental Science, Vol. 8, Issue 6
  • DOI: 10.1039/C5EE00204D

Development and field assessment of transgenic hybrid switchgrass for improved biofuel traits
journal, January 2020


A biomass pretreatment using cellulose-derived solvent Cyrene
journal, January 2020

  • Meng, Xianzhi; Pu, Yunqiao; Li, Mi
  • Green Chemistry, Vol. 22, Issue 9
  • DOI: 10.1039/D0GC00661K

P-LINCS:  A Parallel Linear Constraint Solver for Molecular Simulation
journal, December 2007

  • Hess, Berk
  • Journal of Chemical Theory and Computation, Vol. 4, Issue 1
  • DOI: 10.1021/ct700200b

Plant Biomass Characterization: Application of Solution- and Solid-State NMR Spectroscopy
book, April 2013

  • Pu, Yunqiao; Hallac, Bassem; Ragauskas, Arthur J.
  • Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals
  • DOI: 10.1002/9780470975831.ch18

A mild biomass pretreatment using γ-valerolactone for concentrated sugar production
journal, January 2016

  • Shuai, Li; Questell-Santiago, Ydna M.; Luterbacher, Jeremy S.
  • Green Chemistry, Vol. 18, Issue 4
  • DOI: 10.1039/C5GC02489G

Comparison of dilute acid and ionic liquid pretreatment of switchgrass: Biomass recalcitrance, delignification and enzymatic saccharification
journal, July 2010


The Perspective of Cooperative Hydrotropy on the Solubility in Aqueous Solutions of Cyrene
journal, September 2020

  • Abranches, Dinis O.; Benfica, Jordana; Shimizu, Seishi
  • Industrial & Engineering Chemistry Research, Vol. 59, Issue 41
  • DOI: 10.1021/acs.iecr.0c02346

Polymorphic transitions in single crystals: A new molecular dynamics method
journal, December 1981

  • Parrinello, M.; Rahman, A.
  • Journal of Applied Physics, Vol. 52, Issue 12
  • DOI: 10.1063/1.328693

The structure, function, and biosynthesis of plant cell wall pectic polysaccharides
journal, September 2009


Dihydrolevoglucosenone (Cyrene) as a bio-based alternative for dipolar aprotic solvents
journal, January 2014

  • Sherwood, James; De bruyn, Mario; Constantinou, Andri
  • Chem. Commun., Vol. 50, Issue 68
  • DOI: 10.1039/C4CC04133J

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
journal, September 2015


The Path Forward for Biofuels and Biomaterials
journal, January 2006

  • Ragauskas, Arthur J.; Williams, Charlotte K.; Davison, Brian H.
  • Science, Vol. 311, Issue 5760, p. 484-489
  • DOI: 10.1126/science.1114736

Lignin-first biomass fractionation: the advent of active stabilisation strategies
journal, January 2017

  • Renders, T.; Van den Bosch, S.; Koelewijn, S. -F.
  • Energy & Environmental Science, Vol. 10, Issue 7
  • DOI: 10.1039/C7EE01298E

Recent Trends in the Pretreatment of Lignocellulosic Biomass for Value-Added Products
journal, December 2018


Cyrene: a bio-based solvent for the Mizoroki–Heck reaction of aryl iodides
journal, January 2023

  • Stini, Naya A.; Gkizis, Petros L.; Kokotos, Christoforos G.
  • Organic & Biomolecular Chemistry, Vol. 21, Issue 2
  • DOI: 10.1039/D2OB02012B

Multiscale Molecular Simulation Strategies for Understanding the Delignification Mechanism of Biomass in Cyrene
journal, August 2022


Enhanced sampling simulation analysis of the structure of lignin in the THF–water miscibility gap
journal, January 2016

  • Smith, Micholas Dean; Petridis, Loukas; Cheng, Xiaolin
  • Physical Chemistry Chemical Physics, Vol. 18, Issue 9
  • DOI: 10.1039/C5CP07088K

Formaldehyde stabilization facilitates lignin monomer production during biomass depolymerization
journal, October 2016

  • Shuai, Li; Amiri, Masoud Talebi; Questell-Santiago, Ydna M.
  • Science, Vol. 354, Issue 6310
  • DOI: 10.1126/science.aaf7810

A molecular mechanics force field for lignin
journal, February 2009

  • Petridis, Loukas; Smith, Jeremy C.
  • Journal of Computational Chemistry, Vol. 30, Issue 3
  • DOI: 10.1002/jcc.21075

Effects of CELF Pretreatment Severity on Lignin Structure and the Lignin-Based Polyurethane Properties
journal, July 2020

  • Wang, Yun-Yan; Sengupta, Priya; Scheidemantle, Brent
  • Frontiers in Energy Research, Vol. 8
  • DOI: 10.3389/fenrg.2020.00149

Study of traits and recalcitrance reduction of field-grown COMT down-regulated switchgrass
journal, January 2017


Recent Advances in Enzymatic Conversion of Lignin to Value Added Products
book, December 2020


Polymer Chemistry Applications of Cyrene and its Derivative Cygnet 0.0 as Safer Replacements for Polar Aprotic Solvents
journal, July 2021

  • Milescu, Roxana A.; Zhenova, Anna; Vastano, Marco
  • ChemSusChem, Vol. 14, Issue 16
  • DOI: 10.1002/cssc.202101125

Lignins: Natural polymers from oxidative coupling of 4-hydroxyphenyl- propanoids
journal, January 2004