Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil
Abstract
RP11T was isolated from forest soil following enrichment with 4-hydroxybenzoic acid. Cells of RP11T are aerobic, non-sporulating, exhibit swimming motility, and are rods (0.8 µm by 1.4 µm) that often occur as diplobacillus or in short chains (3–4 cells). Optimal growth on minimal media containing 4-hydroxybenzoic acid (µ=0.216 hr–1) occurred at 30 °C, pH 6.5 or 7.0 and 0% salinity. Comparative chemotaxonomic, genomic and phylogenetic analyses revealed the isolate was distinct from its closest relative type strains identified as Paraburkholderia aspalathi LMG 27731T, Paraburkholderia fungorum LMG 16225T and Paraburkholderia caffeinilytica CF1T. Strain RP11T is genetically distinct from P. aspalathi , its closest relative, in terms of 16S rRNA gene sequence similarity (98.7%), genomic average nucleotide identity (94%) and in silico DNA–DNA hybridization (56.7 %±2.8). The composition of fatty acids and substrate utilization pattern differentiated strain RP11T from its closest relatives, including growth on phthalic acid. Strain RP11T encoded the greatest number of aromatic degradation genes of all eleven closely related type strains and uniquely encoded a phthalic acid dioxygenase and paralog of the 3-hydroxybenzoate 4-monooxygenase. Here, the only ubiquinone detected in strain RP11T was Q-8, and the major cellular fatty acids were C16 : 0, 3OH-C16 : 0, C17 :more » cyclo, C19 : 0 cyclo ω8c, and summed feature 8 (C18 : 1 ω7c/ω6c). On the basis of this polyphasic approach, it was determined that strain RP11T represents a novel species from the genus Paraburkholderia for which the name Paraburkholderia madseniana sp. nov. is proposed. The type strain is RP11T (=DSM 110123T=LMG 31517T).
- Authors:
-
[1];
[1];
[2];
- Cornell Univ., Ithaca, NY (United States)
- Lycoming College, Williamsport, PA (United States)
- Publication Date:
- Research Org.:
- Cornell Univ., Ithaca, NY (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1863908
- Grant/Contract Number:
- SC0016364
- Resource Type:
- Accepted Manuscript
- Journal Name:
- International Journal of Systematic and Evolutionary Microbiology
- Additional Journal Information:
- Journal Volume: 70; Journal Issue: 3; Journal ID: ISSN 1466-5026
- Publisher:
- International Union of Microbiological Societies
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Paraburkholderia; phenolic; 4-hydroxybenzoic acid; Burkholderiaceae; Forest soil
Citation Formats
Wilhelm, Roland C., Murphy, Sean J. L., Feriancek, Nicole M., Karasz, David C., DeRito, Christopher M., Newman, Jeffrey D., and Buckley, Daniel H. Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil. United States: N. p., 2020.
Web. doi:10.1099/ijsem.0.004029.
Wilhelm, Roland C., Murphy, Sean J. L., Feriancek, Nicole M., Karasz, David C., DeRito, Christopher M., Newman, Jeffrey D., & Buckley, Daniel H. Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil. United States. https://doi.org/10.1099/ijsem.0.004029
Wilhelm, Roland C., Murphy, Sean J. L., Feriancek, Nicole M., Karasz, David C., DeRito, Christopher M., Newman, Jeffrey D., and Buckley, Daniel H. Thu .
"Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil". United States. https://doi.org/10.1099/ijsem.0.004029. https://www.osti.gov/servlets/purl/1863908.
@article{osti_1863908,
title = {Paraburkholderia madseniana sp. nov., a phenolic acid-degrading bacterium isolated from acidic forest soil},
author = {Wilhelm, Roland C. and Murphy, Sean J. L. and Feriancek, Nicole M. and Karasz, David C. and DeRito, Christopher M. and Newman, Jeffrey D. and Buckley, Daniel H.},
abstractNote = {RP11T was isolated from forest soil following enrichment with 4-hydroxybenzoic acid. Cells of RP11T are aerobic, non-sporulating, exhibit swimming motility, and are rods (0.8 µm by 1.4 µm) that often occur as diplobacillus or in short chains (3–4 cells). Optimal growth on minimal media containing 4-hydroxybenzoic acid (µ=0.216 hr–1) occurred at 30 °C, pH 6.5 or 7.0 and 0% salinity. Comparative chemotaxonomic, genomic and phylogenetic analyses revealed the isolate was distinct from its closest relative type strains identified as Paraburkholderia aspalathi LMG 27731T, Paraburkholderia fungorum LMG 16225T and Paraburkholderia caffeinilytica CF1T. Strain RP11T is genetically distinct from P. aspalathi , its closest relative, in terms of 16S rRNA gene sequence similarity (98.7%), genomic average nucleotide identity (94%) and in silico DNA–DNA hybridization (56.7 %±2.8). The composition of fatty acids and substrate utilization pattern differentiated strain RP11T from its closest relatives, including growth on phthalic acid. Strain RP11T encoded the greatest number of aromatic degradation genes of all eleven closely related type strains and uniquely encoded a phthalic acid dioxygenase and paralog of the 3-hydroxybenzoate 4-monooxygenase. Here, the only ubiquinone detected in strain RP11T was Q-8, and the major cellular fatty acids were C16 : 0, 3OH-C16 : 0, C17 : 0 cyclo, C19 : 0 cyclo ω8c, and summed feature 8 (C18 : 1 ω7c/ω6c). On the basis of this polyphasic approach, it was determined that strain RP11T represents a novel species from the genus Paraburkholderia for which the name Paraburkholderia madseniana sp. nov. is proposed. The type strain is RP11T (=DSM 110123T=LMG 31517T).},
doi = {10.1099/ijsem.0.004029},
journal = {International Journal of Systematic and Evolutionary Microbiology},
number = 3,
volume = 70,
place = {United States},
year = {Thu Feb 06 00:00:00 EST 2020},
month = {Thu Feb 06 00:00:00 EST 2020}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Burkholderia symbiotica sp. nov., isolated from root nodules of Mimosa spp. native to north-east Brazil
journal, November 2011
- Sheu, S. -Y.; Chou, J. -H.; Bontemps, C.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 9
LC–MS method for screening unknown microbial carotenoids and isoprenoid quinones
journal, January 2012
- Kaiser, Philipp; Geyer, Roland; Surmann, Peter
- Journal of Microbiological Methods, Vol. 88, Issue 1
Degradation of Chrysene by Enriched Bacterial Consortium
journal, June 2018
- Vaidya, Sagar; Devpura, Neelam; Jain, Kunal
- Frontiers in Microbiology, Vol. 9
Burkholderia dilworthii sp. nov., isolated from Lebeckia ambigua root nodules
journal, December 2013
- De Meyer, S. E.; Cnockaert, M.; Ardley, J. K.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 4
Burkholderia dipogonis sp. nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia
journal, December 2015
- Sheu, Shih-Yi; Chen, Ming-Hui; Liu, Wendy Y. Y.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue Pt_12
Burkholderia eburnea sp. nov., isolated from peat soil
journal, April 2014
- Kang, Sang Rim; Srinivasan, Sathiyaraj; Lee, Sang Seob
- International Journal of Systematic and Evolutionary Microbiology, Vol. 64, Issue Pt_4
Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization
journal, March 2018
- Moraes, Eduardo C.; Alvarez, Thabata M.; Persinoti, Gabriela F.
- Biotechnology for Biofuels, Vol. 11, Issue 1
Identification of low molecular weight aromatic compounds by gas chromatography–mass spectrometry (GC–MS) from kraft lignin degradation by three Bacillus sp.
journal, June 2007
- Raj, Abhay; Krishna Reddy, M. M.; Chandra, Ram
- International Biodeterioration & Biodegradation, Vol. 59, Issue 4
Burkholderia acidipaludis sp. nov., aluminium-tolerant bacteria isolated from Chinese water chestnut (Eleocharis dulcis) growing in highly acidic swamps in South-East Asia
journal, October 2009
- Aizawa, T.; Bao Ve, N.; Vijarnsorn, P.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 60, Issue 9
Extractant ph and the release of phenolic compounds from soils, plant roots and leaf litter
journal, January 1981
- Whitehead, D. C.; Dibb, Hazel; Hartley, R. D.
- Soil Biology and Biochemistry, Vol. 13, Issue 5
Burkholderia kirstenboschensis sp. nov. nodulates papilionoid legumes indigenous to South Africa
journal, December 2015
- Steenkamp, Emma T.; van Zyl, Elritha; Beukes, Chrizelle W.
- Systematic and Applied Microbiology, Vol. 38, Issue 8
Burkholderia oxyphila sp. nov., a bacterium isolated from acidic forest soil that catabolizes (+)-catechin and its putative aromatic derivatives
journal, February 2011
- Otsuka, Yuichiro; Muramatsu, Yuki; Nakagawa, Yasuyoshi
- International Journal of Systematic and Evolutionary Microbiology, Vol. 61, Issue 2
Burkholderia heleia sp. nov., a nitrogen-fixing bacterium isolated from an aquatic plant, Eleocharis dulcis, that grows in highly acidic swamps in actual acid sulfate soil areas of Vietnam
journal, May 2010
- Aizawa, Tomoko; Ve, Nguyen Bao; Nakajima, Mutsuyasu
- International Journal of Systematic and Evolutionary Microbiology, Vol. 60, Issue 5
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
journal, March 2018
- Zhalnina, Kateryna; Louie, Katherine B.; Hao, Zhao
- Nature Microbiology, Vol. 3, Issue 4
Burkholderia caballeronis sp. nov., a nitrogen fixing species isolated from tomato (Lycopersicon esculentum) with the ability to effectively nodulate Phaseolus vulgaris
journal, September 2013
- Martínez-Aguilar, Lourdes; Salazar-Salazar, Corelly; Méndez, Rafael Díaz
- Antonie van Leeuwenhoek, Vol. 104, Issue 6
Burkholderia bryophila sp. nov. and Burkholderia megapolitana sp. nov., moss-associated species with antifungal and plant-growth-promoting properties
journal, October 2007
- Vandamme, Peter; Opelt, Katja; Knöchel, Nadine
- International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 10
Phenolic acids act as signaling molecules in plant-microbe symbioses
journal, April 2010
- Mandal, Santi M.; Chakraborty, Dipjyoti; Dey, Satyahari
- Plant Signaling & Behavior, Vol. 5, Issue 4
Mineral Types and Tree Species Determine the Functional and Taxonomic Structures of Forest Soil Bacterial Communities
journal, December 2016
- Colin, Y.; Nicolitch, O.; Turpault, M. -P.
- Applied and Environmental Microbiology, Vol. 83, Issue 5
Paraburkholderia caseinilytica sp. nov., isolated from the pine and broad-leaf mixed forest soil
journal, June 2018
- Gao, Zeng-hong; Zhong, Shu-fen; Lu, Zu-er
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 6
Burkholderia phenoliruptrix sp. nov., to Accommodate the 2,4,5-Trichlorophenoxyacetic Acid and Halophenol-Degrading Strain AC1100
journal, December 2004
- Coenye, Tom; Henry, Deborah; Speert, David P.
- Systematic and Applied Microbiology, Vol. 27, Issue 6
Trimmomatic: a flexible trimmer for Illumina sequence data
journal, April 2014
- Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern
- Bioinformatics, Vol. 30, Issue 15
Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato
journal, June 2017
- Beukes, Chrizelle W.; Palmer, Marike; Manyaka, Puseletso
- Frontiers in Microbiology, Vol. 8
Burkholderia denitrificans sp. nov., isolated from the soil of Dokdo Island, Korea
journal, October 2012
- Lee, Chang-Muk; Weon, Hang-Yeon; Yoon, Sang-Hong
- Journal of Microbiology, Vol. 50, Issue 5
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
journal, June 2015
- Simão, Felipe A.; Waterhouse, Robert M.; Ioannidis, Panagiotis
- Bioinformatics, Vol. 31, Issue 19
Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
journal, December 2000
- Griffiths, R. I.; Whiteley, A. S.; O'Donnell, A. G.
- Applied and Environmental Microbiology, Vol. 66, Issue 12
Biochemical investigation of kraft lignin degradation by Pandoraea sp. B-6 isolated from bamboo slips
journal, July 2013
- Shi, Yan; Chai, Liyuan; Tang, Chongjian
- Bioprocess and Biosystems Engineering, Vol. 36, Issue 12
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
journal, November 2013
- Yilmaz, Pelin; Parfrey, Laura Wegener; Yarza, Pablo
- Nucleic Acids Research, Vol. 42, Issue D1
Burkholderia tropica sp. nov., a novel nitrogen-fixing, plant-associated bacterium
journal, November 2004
- Reis, V. M.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 54, Issue 6
Prodigal: prokaryotic gene recognition and translation initiation site identification
journal, March 2010
- Hyatt, Doug; Chen, Gwo-Liang; LoCascio, Philip F.
- BMC Bioinformatics, Vol. 11, Issue 1
Taxonomic use of DNA G+C content and DNA–DNA hybridization in the genomic age
journal, February 2014
- Klenk, Hans-Peter; Meier-Kolthoff, Jan P.; Göker, Markus
- International Journal of Systematic and Evolutionary Microbiology, Vol. 64, Issue 2
Burkholderia metalliresistens sp. nov., a multiple metal-resistant and phosphate-solubilising species isolated from heavy metal-polluted soil in Southeast China
journal, April 2015
- Guo, Jun Kang; Ding, Yong Zhen; Feng, Ren Wei
- Antonie van Leeuwenhoek, Vol. 107, Issue 6
Burkholderia bannensis sp. nov., an acid-neutralizing bacterium isolated from torpedo grass (Panicum repens) growing in highly acidic swamps
journal, July 2011
- Aizawa, Tomoko; Vijarnsorn, Pisoot; Nakajima, Mutsuyasu
- International Journal of Systematic and Evolutionary Microbiology, Vol. 61, Issue 7
Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America
journal, August 2006
- Chen, W. -M.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 56, Issue 8
Paraburkholderia aromaticivorans sp. nov., an aromatic hydrocarbon-degrading bacterium, isolated from gasoline-contaminated soil
journal, April 2018
- Lee, Yunho; Jeon, Che Ok
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 4
Burkholderia tuberum sp. nov. and Burkholderia phymatum sp. nov., Nodulate the Roots of Tropical Legumes
journal, January 2002
- Vandamme, Peter; Goris, Johan; Chen, Wen-Ming
- Systematic and Applied Microbiology, Vol. 25, Issue 4
Paraburkholderia caffeinilytica sp. nov., isolated from the soil of a tea plantation
journal, October 2016
- Gao, Ziqing; Yuan, Yue; Xu, Lei
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 10
Paraburkholderia azotifigens sp. nov., a nitrogen-fixing bacterium isolated from paddy soil
journal, January 2018
- Choi, Gyu-Min; Im, Wan-Taek
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 1
Chemotaxis of Rhizobium leguminosarum biovar phaseoli towards Flavonoid Inducers of the Symbiotic Nodulation Genes
journal, October 1988
- Munoz Aguilar, J. M.; Ashby, A. M.; Richards, A. J. M.
- Microbiology, Vol. 134, Issue 10
Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology: IVET identification of B. multivorans genes induced in soil
journal, April 2010
- Nishiyama, Eri; Ohtsubo, Yoshiyuki; Nagata, Yuji
- Environmental Microbiology, Vol. 12, Issue 9
Burkholderia aspalathi sp. nov., isolated from root nodules of the South African legume Aspalathus abietina Thunb
journal, March 2014
- Mavengere, N. R.; Ellis, A. G.; Le Roux, J. J.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 64, Issue Pt 6
Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood
journal, June 2009
- Valášková, Vendula; de Boer, Wietse; Klein Gunnewiek, Paulien J. A.
- The ISME Journal, Vol. 3, Issue 10
Exploring the rhizospheric and endophytic bacterial communities of Acer pseudoplatanus growing on a TNT-contaminated soil: towards the development of a rhizocompetent TNT-detoxifying plant growth promoting consortium
journal, October 2014
- Thijs, Sofie; Van Dillewijn, Pieter; Sillen, Wouter
- Plant and Soil, Vol. 385, Issue 1-2
Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
journal, August 2018
- Estrada-de los Santos, Paulina; Palmer, Marike; Chávez-Ramírez, Belén
- Genes, Vol. 9, Issue 8
KBase: The United States Department of Energy Systems Biology Knowledgebase
journal, July 2018
- Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S.
- Nature Biotechnology, Vol. 36, Issue 7
A selective genome-guided method for environmental Burkholderia isolation
journal, January 2019
- Haeckl, F. P. Jake; Baldim, João L.; Iskakova, Dasha
- Journal of Industrial Microbiology & Biotechnology, Vol. 46, Issue 3-4
Burkholderia sediminicola sp. nov., isolated from freshwater sediment
journal, March 2008
- Lim, J. H.; Baek, S. -H.; Lee, S. -T.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 3
Burkholderia ferrariae sp. nov., isolated from an iron ore in Brazil
journal, October 2006
- Valverde, Angel; Delvasto, Pedro; Peix, Alvaro
- International Journal of Systematic and Evolutionary Microbiology, Vol. 56, Issue 10
Burkholderia susongensis sp. nov., a mineral-weathering bacterium isolated from weathered rock surface
journal, March 2015
- Gu, Jia-Yu; Zang, Sheng-Gang; Sheng, Xia-Fang
- International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue Pt_3
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
journal, May 2012
- Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry
- Journal of Computational Biology, Vol. 19, Issue 5
Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp.
journal, March 2012
- Sheu, S. -Y.; Chou, J. -H.; Bontemps, C.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
4-Hydroxybenzoate Hydroxylase from Pseudomonas Sp. CBS3. Purification, Characterization, Gene Cloning, Sequence Analysis and Assignment of Structural Features Determining the Coenzyme Specificity
journal, July 1996
- Seibold, Birgit; Matthes, Martina; Eppink, Michel H. M.
- European Journal of Biochemistry, Vol. 239, Issue 2
Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia
journal, August 2016
- Dobritsa, Anatoly P.; Samadpour, Mansour
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 8
Paraburkholderia pallidirosea sp. nov., isolated from a monsoon evergreen broad-leaved forest soil
journal, November 2016
- Lv, Ying-ying; Chen, Mei-hong; Xia, Fan
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 11
Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples
journal, May 2001
- Coenye, T.; Laevens, S.; Willems, A.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 51, Issue 3
Substitution of Arg214 at the substrate-binding site of p, -hydroxybenzoate hydroxylase from Pseudomonas fluorescens
journal, December 1992
- Berkel, Willem; Westphal, Adrie; Eschrich, Klaus
- European Journal of Biochemistry, Vol. 210, Issue 2
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
journal, November 2018
- Jain, Chirag; Rodriguez-R, Luis M.; Phillippy, Adam M.
- Nature Communications, Vol. 9, Issue 1
Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil: Impact of white-rot fungi on bacteria colonizing wood
journal, February 2008
- Folman, Larissa B.; Klein Gunnewiek, Paulien J. A.; Boddy, Lynne
- FEMS Microbiology Ecology, Vol. 63, Issue 2
Burkholderia phytofirmans sp. nov., a novel plant-associated bacterium with plant-beneficial properties
journal, May 2005
- Sessitsch, A.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 55, Issue 3
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
journal, May 2019
- Meier-Kolthoff, Jan P.; Göker, Markus
- Nature Communications, Vol. 10, Issue 1
Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov.
journal, September 2004
- Goris, Johan; De Vos, Paul; Caballero-Mellado, Jesús
- International Journal of Systematic and Evolutionary Microbiology, Vol. 54, Issue 5
The structure of legume–rhizobium interaction networks and their response to tree invasions
journal, January 2016
- Le Roux, Johannes J.; Mavengere, Natasha R.; Ellis, Allan G.
- AoB Plants, Vol. 8
Burkholderia humisilvae sp. nov., Burkholderia solisilvae sp. nov. and Burkholderia rhizosphaerae sp. nov., isolated from forest soil and rhizosphere soil
journal, September 2015
- Lee, Jae-Chan; Whang, Kyung-Sook
- International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue Pt_9
Diversity of Transconjugants that Acquired Plasmid pJP4 or pEMT1 after Inoculation of a Donor Strain in the A- and B-horizon of an Agricultural Soil and Description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov.
journal, January 2002
- Goris, Johan; Dejonghe, Winnie; Falsen, Enevold
- Systematic and Applied Microbiology, Vol. 25, Issue 3
Plant probiotic bacteria Bacillus and Paraburkholderia improve growth, yield and content of antioxidants in strawberry fruit
journal, February 2018
- Rahman, Mosaddiqur; Sabir, Abdullah As; Mukta, Julakha Akter
- Scientific Reports, Vol. 8, Issue 1
Lys42 and Ser42 variants of p-hydroxybenzoate hydroxylase from Pseudomonas fluorescens reveal that Arg42 is essential for NADPH binding
journal, April 1998
- Eppink, Michel H. M.; Schreuder, Herman A.; Van Berkel, Willem J. H.
- European Journal of Biochemistry, Vol. 253, Issue 1
Brassica napus hairy roots and rhizobacteria for phenolic compounds removal
journal, September 2012
- González, Paola S.; Ontañon, Ornella M.; Armendariz, Ana L.
- Environmental Science and Pollution Research, Vol. 20, Issue 3
Burkholderia silvatlantica sp. nov., a diazotrophic bacterium associated with sugar cane and maize
journal, August 2006
- Perin, L.; Martínez-Aguilar, L.; Paredes-Valdez, G.
- International Journal of Systematic and Evolutionary Microbiology, Vol. 56, Issue 8
Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis
journal, May 2014
- Nagata, Yuji; Senbongi, Junko; Ishibashi, Yoko
- Microbiology, Vol. 160, Issue 5
Volcanic Soils as Sources of Novel CO-Oxidizing Paraburkholderia and Burkholderia: Paraburkholderia hiiakae sp. nov., Paraburkholderia metrosideri sp. nov., Paraburkholderia paradisi sp. nov., Paraburkholderia peleae sp. nov., and Burkholderia alpina sp. nov. a Member of the Burkholderia cepacia Complex
journal, February 2017
- Weber, Carolyn F.; King, Gary M.
- Frontiers in Microbiology, Vol. 8
Volatile-Mediated Effects Predominate in Paraburkholderia phytofirmans Growth Promotion and Salt Stress Tolerance of Arabidopsis thaliana
journal, November 2016
- Ledger, Thomas; Rojas, Sandy; Timmermann, Tania
- Frontiers in Microbiology, Vol. 7
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
journal, November 2013
- Overbeek, Ross; Olson, Robert; Pusch, Gordon D.
- Nucleic Acids Research, Vol. 42, Issue D1
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
text, January 2006
- Reyes, V. L.; Marx, C. J.; Spilker, T.
- National Academy of Sciences NAS
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility
journal, October 2006
- Chain, P. S. G.; Denef, V. J.; Konstantinidis, K. T.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 42
Burkholderia rhynchosiae sp. nov., isolated from Rhynchosia ferulifolia root nodules
journal, May 2013
- De Meyer, S. E.; Cnockaert, M.; Ardley, J. K.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 11
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing
journal, September 2018
- Wilhelm, Roland C.; Singh, Rahul; Eltis, Lindsay D.
- The ISME Journal, Vol. 13, Issue 2
Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species
journal, December 2014
- Sawana, Amandeep; Adeolu, Mobolaji; Gupta, Radhey S.
- Frontiers in Genetics, Vol. 5
Burkholderia insulsa sp. nov., a facultatively chemolithotrophic bacterium isolated from an arsenic-rich shallow marine hydrothermal system
journal, January 2015
- Rusch, Antje; Islam, Shaer; Savalia, Pratixa
- International Journal of Systematic and Evolutionary Microbiology, Vol. 65, Issue Pt_1
Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.
journal, August 2018
- De Meyer, Sofie E.; Cnockaert, Margo; Moulin, Lionel
- International Journal of Systematic and Evolutionary Microbiology, Vol. 68, Issue 8
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
journal, January 2007
- Klappenbach, Joel A.; Goris, Johan; Vandamme, Peter
- International Journal of Systematic and Evolutionary Microbiology, Vol. 57, Issue 1
Burkholderia terrae sp. nov., isolated from a forest soil
journal, February 2006
- Yang, Hee-Chan; Im, Wan-Taek; Kim, Kwang Kyu
- International Journal of Systematic and Evolutionary Microbiology, Vol. 56, Issue 2
Burkholderia jirisanensis sp. nov., isolated from forest soil
journal, March 2016
- Kim, Seil; Gong, Gyeongtaek; Min Woo, Han
- International Journal of Systematic and Evolutionary Microbiology, Vol. 66, Issue 3