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Title: Structural investigation of three distinct amorphous forms of Ar hydrate

Abstract

Three amorphous forms of Ar hydrate were produced using the crystalline clathrate hydrate Ar·6.5H2O (structure II, Fd$$\bar{3}$$ with combining macron]m, a ≈ 17.1 Å) as a precursor and structurally characterized by a combination of isotope substitution (36Ar) neutron diffraction and molecular dynamics (MD) simulations. The first form followed from the pressure-induced amorphization of the precursor at 1.5 GPa at 95 K and the second from isobaric annealing at 2 GPa and subsequent cooling back to 95 K. In analogy to amorphous ice, these amorphs are termed high-density amorphous (HDA) and very-high-density amorphous (VHDA), respectively. The third amorph (recovered amorphous, RA) was obtained when recovering VHDA to ambient pressure (at 95 K). The three amorphs have distinctly different structures. In HDA the distinction of the original two crystallographically different Ar guests is maintained as differently dense Ar–water hydration structures, which expresses itself in a split first diffraction peak in the neutron structure factor function. Relaxation of the local water structure during annealing produces a homogeneous hydration environment around Ar, which is accompanied with a densification by about 3%. Upon pressure release the homogeneous amorphous structure undergoes expansion by about 21%. Both VHDA and RA can be considered frozen solutions of immiscible Ar and water in which in average 15 and 11 water molecules, respectively, coordinate Ar out to 4 Å. The local water structures of HDA and VHDA Ar hydrates show some analogy to those of the corresponding amorphous ices, featuring H2O molecules in 5- and 6-fold coordination with neighboring molecules. However, they are considerably less dense. Most similarity is seen between RA and low density amorphous ice (LDA), which both feature strictly 4-coordinated H2O networks. It is inferred that, depending on the kind of clathrate structure and occupancy of cages, amorphous states produced from clathrate hydrates display variable local water structures.

Authors:
ORCiD logo [1]; ORCiD logo [2]; ORCiD logo [2]; ORCiD logo [3];  [4];  [4]; ORCiD logo [1]; ORCiD logo [1]
  1. Department of Materials and Environmental Chemistry, Stockholm University, SE-10691 Stockholm, Sweden
  2. Department of Chemistry, Federal University of Juiz de Fora, Juiz de Fora, MG, 36036-900, Brazil
  3. Department of Physics, Umeå University, Umeå, SE-90187, Sweden
  4. Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE Office of Science (SC); Swedish Foundation for Strategic Research (SSF); Swedish National Graduate School; Swedish Research Council (SRC); Swedish Foundation for International Cooperation in Research and Higher Education (STINT); CAPES
OSTI Identifier:
1820188
Alternate Identifier(s):
OSTI ID: 1903914
Grant/Contract Number:  
AC05-00OR22725; 2018-05973; 88887.304724/2018
Resource Type:
Published Article
Journal Name:
RSC Advances
Additional Journal Information:
Journal Name: RSC Advances Journal Volume: 11 Journal Issue: 49; Journal ID: ISSN 2046-2069
Publisher:
Royal Society of Chemistry (RSC)
Country of Publication:
United Kingdom
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY

Citation Formats

Brant Carvalho, Paulo H. B., Moraes, Pedro Ivo R., Leitão, Alexandre A., Andersson, Ove, Tulk, Chris A., Molaison, Jamie, Lyubartsev, Alexander P., and Häussermann, Ulrich. Structural investigation of three distinct amorphous forms of Ar hydrate. United Kingdom: N. p., 2021. Web. doi:10.1039/D1RA05697B.
Brant Carvalho, Paulo H. B., Moraes, Pedro Ivo R., Leitão, Alexandre A., Andersson, Ove, Tulk, Chris A., Molaison, Jamie, Lyubartsev, Alexander P., & Häussermann, Ulrich. Structural investigation of three distinct amorphous forms of Ar hydrate. United Kingdom. https://doi.org/10.1039/D1RA05697B
Brant Carvalho, Paulo H. B., Moraes, Pedro Ivo R., Leitão, Alexandre A., Andersson, Ove, Tulk, Chris A., Molaison, Jamie, Lyubartsev, Alexander P., and Häussermann, Ulrich. Tue . "Structural investigation of three distinct amorphous forms of Ar hydrate". United Kingdom. https://doi.org/10.1039/D1RA05697B.
@article{osti_1820188,
title = {Structural investigation of three distinct amorphous forms of Ar hydrate},
author = {Brant Carvalho, Paulo H. B. and Moraes, Pedro Ivo R. and Leitão, Alexandre A. and Andersson, Ove and Tulk, Chris A. and Molaison, Jamie and Lyubartsev, Alexander P. and Häussermann, Ulrich},
abstractNote = {Three amorphous forms of Ar hydrate were produced using the crystalline clathrate hydrate Ar·6.5H2O (structure II, Fd$\bar{3}$ with combining macron]m, a ≈ 17.1 Å) as a precursor and structurally characterized by a combination of isotope substitution (36Ar) neutron diffraction and molecular dynamics (MD) simulations. The first form followed from the pressure-induced amorphization of the precursor at 1.5 GPa at 95 K and the second from isobaric annealing at 2 GPa and subsequent cooling back to 95 K. In analogy to amorphous ice, these amorphs are termed high-density amorphous (HDA) and very-high-density amorphous (VHDA), respectively. The third amorph (recovered amorphous, RA) was obtained when recovering VHDA to ambient pressure (at 95 K). The three amorphs have distinctly different structures. In HDA the distinction of the original two crystallographically different Ar guests is maintained as differently dense Ar–water hydration structures, which expresses itself in a split first diffraction peak in the neutron structure factor function. Relaxation of the local water structure during annealing produces a homogeneous hydration environment around Ar, which is accompanied with a densification by about 3%. Upon pressure release the homogeneous amorphous structure undergoes expansion by about 21%. Both VHDA and RA can be considered frozen solutions of immiscible Ar and water in which in average 15 and 11 water molecules, respectively, coordinate Ar out to 4 Å. The local water structures of HDA and VHDA Ar hydrates show some analogy to those of the corresponding amorphous ices, featuring H2O molecules in 5- and 6-fold coordination with neighboring molecules. However, they are considerably less dense. Most similarity is seen between RA and low density amorphous ice (LDA), which both feature strictly 4-coordinated H2O networks. It is inferred that, depending on the kind of clathrate structure and occupancy of cages, amorphous states produced from clathrate hydrates display variable local water structures.},
doi = {10.1039/D1RA05697B},
journal = {RSC Advances},
number = 49,
volume = 11,
place = {United Kingdom},
year = {Tue Sep 14 00:00:00 EDT 2021},
month = {Tue Sep 14 00:00:00 EDT 2021}
}

Journal Article:
Free Publicly Available Full Text
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https://doi.org/10.1039/D1RA05697B

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Works referenced in this record:

How many amorphous ices are there?
journal, January 2011

  • Loerting, Thomas; Winkel, Katrin; Seidl, Markus
  • Physical Chemistry Chemical Physics, Vol. 13, Issue 19
  • DOI: 10.1039/c0cp02600j

Role of Guest Molecules in the Mechanical Properties of Clathrate Hydrates
journal, October 2018


Pressure-induced amorphization of methane hydrate
journal, September 2012


‘Melting ice’ I at 77 K and 10 kbar: a new method of making amorphous solids
journal, August 1984

  • Mishima, O.; Calvert, L. D.; Whalley, E.
  • Nature, Vol. 310, Issue 5976
  • DOI: 10.1038/310393a0

Transitions in pressure-amorphized clathrate hydrates akin to those of amorphous ices
journal, July 2019

  • Andersson, Ove; Brant Carvalho, Paulo H. B.; Hsu, Ying-Jui
  • The Journal of Chemical Physics, Vol. 151, Issue 1
  • DOI: 10.1063/1.5096981

Equilibrated High-Density Amorphous Ice and Its First-Order Transition to the Low-Density Form
journal, December 2011

  • Winkel, Katrin; Mayer, Erwin; Loerting, Thomas
  • The Journal of Physical Chemistry B, Vol. 115, Issue 48
  • DOI: 10.1021/jp203985w

Mantid—Data analysis and visualization package for neutron scattering and μ SR experiments
journal, November 2014

  • Arnold, O.; Bilheux, J. C.; Borreguero, J. M.
  • Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, Vol. 764
  • DOI: 10.1016/j.nima.2014.07.029

A potential model for the study of ices and amorphous water: TIP4P/Ice
journal, June 2005

  • Abascal, J. L. F.; Sanz, E.; García Fernández, R.
  • The Journal of Chemical Physics, Vol. 122, Issue 23
  • DOI: 10.1063/1.1931662

Colloquium : Water’s controversial glass transitions
journal, February 2016


Molecular Perspectives on Structure and Dynamics in Clathrate Hydrates
journal, April 1994


Canonical sampling through velocity rescaling
journal, January 2007

  • Bussi, Giovanni; Donadio, Davide; Parrinello, Michele
  • The Journal of Chemical Physics, Vol. 126, Issue 1
  • DOI: 10.1063/1.2408420

The local and intermediate range structures of the five amorphous ices at 80K and ambient pressure: A Faber-Ziman and Bhatia-Thornton analysis
journal, November 2006

  • Bowron, D. T.; Finney, J. L.; Hallbrucker, A.
  • The Journal of Chemical Physics, Vol. 125, Issue 19
  • DOI: 10.1063/1.2378921

UFF, a full periodic table force field for molecular mechanics and molecular dynamics simulations
journal, December 1992

  • Rappe, A. K.; Casewit, C. J.; Colwell, K. S.
  • Journal of the American Chemical Society, Vol. 114, Issue 25, p. 10024-10035
  • DOI: 10.1021/ja00051a040

Structural systematics in the clathrate hydrates under pressure
journal, January 2003

  • Loveday, J. S.; Nelmes, R. J.; Klug, D. D.
  • Canadian Journal of Physics, Vol. 81, Issue 1-2
  • DOI: 10.1139/p03-040

Pressure-induced amorphization of noble gas clathrate hydrates
journal, February 2021


Pressure-amorphized cubic structure II clathrate hydrate: crystallization in slow motion
journal, January 2011

  • Bauer, Marion; Többens, Daniel M.; Mayer, Erwin
  • Phys. Chem. Chem. Phys., Vol. 13, Issue 6
  • DOI: 10.1039/C0CP01351J

A second distinct structural “state” of high-density amorphous ice at 77 K and 1 bar
journal, December 2001

  • Loerting, Thomas; Salzmann, Christoph; Kohl, Ingrid
  • Physical Chemistry Chemical Physics, Vol. 3, Issue 24
  • DOI: 10.1039/b108676f

Structural Investigations of Argon Hydrates at Pressures up to 10 kbar
journal, February 2004


Elucidation of the pressure induced amorphization of tetrahydrofuran clathrate hydrate
journal, May 2019

  • Brant Carvalho, Paulo H. B.; Mace, Amber; Bull, Craig L.
  • The Journal of Chemical Physics, Vol. 150, Issue 20
  • DOI: 10.1063/1.5083958

X-ray Scattering and O–O Pair-Distribution Functions of Amorphous Ices
journal, July 2018

  • Mariedahl, Daniel; Perakis, Fivos; Späh, Alexander
  • The Journal of Physical Chemistry B, Vol. 122, Issue 30
  • DOI: 10.1021/acs.jpcb.8b04823

GSAS-II : the genesis of a modern open-source all purpose crystallography software package
journal, March 2013


A Theory of Water and Ionic Solution, with Particular Reference to Hydrogen and Hydroxyl Ions
journal, August 1933

  • Bernal, J. D.; Fowler, R. H.
  • The Journal of Chemical Physics, Vol. 1, Issue 8
  • DOI: 10.1063/1.1749327

Pressure‐induced phase transitions in clathrate hydrates
journal, January 1991

  • Handa, Y. P.; Tse, J. S.; Klug, D. D.
  • The Journal of Chemical Physics, Vol. 94, Issue 1
  • DOI: 10.1063/1.460329

Structure and stability of an amorphous water–methane mixture produced by cold compression of methane hydrate
journal, August 2012


Polymorphic transitions in single crystals: A new molecular dynamics method
journal, December 1981

  • Parrinello, M.; Rahman, A.
  • Journal of Applied Physics, Vol. 52, Issue 12
  • DOI: 10.1063/1.328693

Structural differences between unannealed and expanded high-density amorphous ice based on isotope substitution neutron diffraction
journal, August 2019


Structures and Low-Energy Excitations of Amorphous Gas Hydrates
journal, September 2012

  • Kikuchi, Tatsuya; Inamura, Yasuhiro; Onoda-Yamamuro, Noriko
  • Journal of the Physical Society of Japan, Vol. 81, Issue 9
  • DOI: 10.1143/JPSJ.81.094604

GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers
journal, September 2015


Pressure amorphized ices – an atomistic perspective
journal, January 2012

  • Tse, John S.; Klug, Dennis D.
  • Physical Chemistry Chemical Physics, Vol. 14, Issue 23
  • DOI: 10.1039/c2cp40201g

Annealed high-density amorphous ice under pressure
journal, May 2006

  • Nelmes, Richard J.; Loveday, John S.; Strässle, Thierry
  • Nature Physics, Vol. 2, Issue 6
  • DOI: 10.1038/nphys313

The ability of small molecules to form clathrate hydrates of structure II
journal, September 1984

  • Davidson, D. W.; Handa, Y. P.; Ratcliffe, C. I.
  • Nature, Vol. 311, Issue 5982
  • DOI: 10.1038/311142a0

Neutron scattering lengths and cross sections
journal, January 1992


Neutron diffraction studies of an argon/amorphous ice co-deposit using isotopic substitution
journal, January 2000

  • Dore, J. C.; Blakey, D. M.; Chieux, P.
  • Physical Chemistry Chemical Physics, Vol. 2, Issue 8
  • DOI: 10.1039/a909319b

Transitions in Pressure Collapsed Clathrate Hydrates
journal, February 2015

  • Andersson, Ove; Nakazawa, Yasuhiro
  • The Journal of Physical Chemistry B, Vol. 119, Issue 9
  • DOI: 10.1021/jp511442r

GenIce: Hydrogen-Disordered Ice Generator
journal, October 2017

  • Matsumoto, Masakazu; Yagasaki, Takuma; Tanaka, Hideki
  • Journal of Computational Chemistry, Vol. 39, Issue 1
  • DOI: 10.1002/jcc.25077

A smooth particle mesh Ewald method
journal, November 1995

  • Essmann, Ulrich; Perera, Lalith; Berkowitz, Max L.
  • The Journal of Chemical Physics, Vol. 103, Issue 19
  • DOI: 10.1063/1.470117

Evidence of pressure-induced amorphization of tetrahydrofuran clathrate hydrate
journal, November 2004


A Second Glass Transition in Pressure Collapsed Type II Clathrate Hydrates
journal, March 2018

  • Andersson, Ove; Häussermann, Ulrich
  • The Journal of Physical Chemistry B, Vol. 122, Issue 15
  • DOI: 10.1021/acs.jpcb.8b01269

VMD: Visual molecular dynamics
journal, February 1996


High-pressure gas hydrates
journal, January 2008

  • Loveday, J. S.; Nelmes, R. J.
  • Phys. Chem. Chem. Phys., Vol. 10, Issue 7
  • DOI: 10.1039/B704740A

Dielectric properties of high-density amorphous ice under pressure
journal, November 2006


X-ray and Neutron Scattering of Water
journal, April 2016

  • Amann-Winkel, Katrin; Bellissent-Funel, Marie-Claire; Bove, Livia E.
  • Chemical Reviews, Vol. 116, Issue 13
  • DOI: 10.1021/acs.chemrev.5b00663