Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging
Abstract
Different studies in X-ray microscopy have arrived at conflicting conclusions about the dose efficiency of imaging modes involving the recording of intensity distributions in the near (Fresnel regime) or far (Fraunhofer regime) field downstream of a specimen. A numerical study is presented on the dose efficiency of near-field holography, near-field ptychography and far-field ptychography, where ptychography involves multiple overlapping finite-sized illumination positions. Unlike what has been reported for coherent diffraction imaging, which involves recording a single far-field diffraction pattern, it is found that all three methods offer similar image quality when using the same fluence on the specimen, with far-field ptychography offering slightly better spatial resolution and a lower mean error. These results support the concept that (if the experiment and image reconstruction are done properly) the sample can be near or far; wherever you are, photon fluence on the specimen sets one limit to spatial resolution.
- Publication Date:
- Research Org.:
- Argonne National Laboratory (ANL), Argonne, IL (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC); National Institutes of Health (NIH)
- OSTI Identifier:
- 1630984
- Alternate Identifier(s):
- OSTI ID: 1631584
- Grant/Contract Number:
- AC02-06CH11357
- Resource Type:
- Published Article
- Journal Name:
- Journal of Applied Crystallography (Online)
- Additional Journal Information:
- Journal Name: Journal of Applied Crystallography (Online) Journal Volume: 53 Journal Issue: 3; Journal ID: ISSN 1600-5767
- Publisher:
- International Union of Crystallography
- Country of Publication:
- Denmark
- Language:
- English
- Subject:
- 42 ENGINEERING; X-ray microscopy; holography; ptychography; radiation dose
Citation Formats
Du, Ming, Gürsoy, Dogˇa, and Jacobsen, Chris. Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging. Denmark: N. p., 2020.
Web. doi:10.1107/S1600576720005816.
Du, Ming, Gürsoy, Dogˇa, & Jacobsen, Chris. Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging. Denmark. https://doi.org/10.1107/S1600576720005816
Du, Ming, Gürsoy, Dogˇa, and Jacobsen, Chris. Wed .
"Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging". Denmark. https://doi.org/10.1107/S1600576720005816.
@article{osti_1630984,
title = {Near, far, wherever you are: simulations on the dose efficiency of holographic and ptychographic coherent imaging},
author = {Du, Ming and Gürsoy, Dogˇa and Jacobsen, Chris},
abstractNote = {Different studies in X-ray microscopy have arrived at conflicting conclusions about the dose efficiency of imaging modes involving the recording of intensity distributions in the near (Fresnel regime) or far (Fraunhofer regime) field downstream of a specimen. A numerical study is presented on the dose efficiency of near-field holography, near-field ptychography and far-field ptychography, where ptychography involves multiple overlapping finite-sized illumination positions. Unlike what has been reported for coherent diffraction imaging, which involves recording a single far-field diffraction pattern, it is found that all three methods offer similar image quality when using the same fluence on the specimen, with far-field ptychography offering slightly better spatial resolution and a lower mean error. These results support the concept that (if the experiment and image reconstruction are done properly) the sample can be near or far; wherever you are, photon fluence on the specimen sets one limit to spatial resolution.},
doi = {10.1107/S1600576720005816},
journal = {Journal of Applied Crystallography (Online)},
number = 3,
volume = 53,
place = {Denmark},
year = {Wed May 27 00:00:00 EDT 2020},
month = {Wed May 27 00:00:00 EDT 2020}
}
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https://doi.org/10.1107/S1600576720005816
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Works referenced in this record:
Phase retrieval with transverse translation diversity: a nonlinear optimization approach
journal, January 2008
- Guizar-Sicairos, Manuel; Fienup, James R.
- Optics Express, Vol. 16, Issue 10
Optimization of overlap uniformness for ptychography
journal, January 2014
- Huang, Xiaojing; Yan, Hanfei; Harder, Ross
- Optics Express, Vol. 22, Issue 10
Influence of the overlap parameter on the convergence of the ptychographical iterative engine
journal, April 2008
- Bunk, Oliver; Dierolf, Martin; Kynde, Søren
- Ultramicroscopy, Vol. 108, Issue 5
Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy
journal, January 2009
- Huang, Xiaojing; Miao, Huijie; Steinbrener, Jan
- Optics Express, Vol. 17, Issue 16
Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens
journal, July 1999
- Miao, Jianwei; Charalambous, Pambos; Kirz, Janos
- Nature, Vol. 400, Issue 6742
X-ray ptychographic and fluorescence microscopy of frozen-hydrated cells using continuous scanning
journal, March 2017
- Deng, Junjing; Vine, David J.; Chen, Si
- Scientific Reports, Vol. 7, Issue 1
Der experimentelle Nachweis der Brechung von Röntgenstrahlen
journal, December 1924
- Larsson, A.; Siegbahn, M.; Waller, I.
- The Science of Nature, Vol. 12, Issue 52
Using automatic differentiation as a general framework for ptychographic reconstruction
journal, January 2019
- Kandel, Saugat; Maddali, S.; Allain, Marc
- Optics Express, Vol. 27, Issue 13
Distributed Automatic Differentiation for Ptychography
journal, January 2017
- Nashed, Youssef S. G.; Peterka, Tom; Deng, Junjing
- Procedia Computer Science, Vol. 108
Quantitative Image Reconstruction of GaN Quantum Dots from Oversampled Diffraction Intensities Alone
journal, August 2005
- Miao, Jianwei; Nishino, Yoshinori; Kohmura, Yoshiki
- Physical Review Letters, Vol. 95, Issue 8
Movable Aperture Lensless Transmission Microscopy: A Novel Phase Retrieval Algorithm
journal, July 2004
- Faulkner, H. M. L.; Rodenburg, J. M.
- Physical Review Letters, Vol. 93, Issue 2
Phase zone plates for x rays and the extreme uv
journal, January 1974
- Kirz, Janos
- Journal of the Optical Society of America, Vol. 64, Issue 3
Phase retrieval and twin-image elimination for in-line Fresnel holograms
journal, January 1987
- Liu, G.; Scott, P. D.
- Journal of the Optical Society of America A, Vol. 4, Issue 1
Beugung im inhomogenen Primärstrahlwellenfeld. III. Amplituden- und Phasenbestimmung bei unperiodischen Objekten
journal, July 1969
- Hoppe, W.
- Acta Crystallographica Section A, Vol. 25, Issue 4
The fluence–resolution relationship in holographic and coherent diffractive imaging
journal, March 2017
- Hagemann, Johannes; Salditt, Tim
- Journal of Applied Crystallography, Vol. 50, Issue 2
Reconstruction of a complex-valued object from the modulus of its Fourier transform using a support constraint
journal, January 1987
- Fienup, J. R.
- Journal of the Optical Society of America A, Vol. 4, Issue 1
High-Resolution Scanning X-ray Diffraction Microscopy
journal, July 2008
- Thibault, P.; Dierolf, M.; Menzel, A.
- Science, Vol. 321, Issue 5887
Noise models for low counting rate coherent diffraction imaging
journal, January 2012
- Godard, Pierre; Allain, Marc; Chamard, Virginie
- Optics Express, Vol. 20, Issue 23
The potential and limitations of neutrons, electrons and X-rays for atomic resolution microscopy of unstained biological molecules
journal, May 1995
- Henderson, Richard
- Quarterly Reviews of Biophysics, Vol. 28, Issue 2
Relaxed averaged alternating reflections for diffraction imaging
journal, November 2004
- Luke, D. Russell
- Inverse Problems, Vol. 21, Issue 1
Dose requirements for resolving a given feature in an object by coherent x-ray diffraction imaging
journal, March 2010
- Schropp, Andreas; Schroer, Christian G.
- New Journal of Physics, Vol. 12, Issue 3
Nanoscale x-ray imaging of circuit features without wafer etching
journal, March 2017
- Deng, Junjing; Hong, Young Pyo; Chen, Si
- Physical Review B, Vol. 95, Issue 10
Translation position determination in ptychographic coherent diffraction imaging
journal, January 2013
- Zhang, Fucai; Peterson, Isaac; Vila-Comamala, Joan
- Optics Express, Vol. 21, Issue 11
Diffractive imaging of nonperiodic materials with future coherent X-ray sources
journal, August 2004
- Shen, Qun; Bazarov, Ivan; Thibault, Pierre
- Journal of Synchrotron Radiation, Vol. 11, Issue 5
Resolving Power in Diffraction Microscopy with Special Reference to X-Rays
journal, June 1952
- Baez, Albert V.
- Nature, Vol. 169, Issue 4310
Probe retrieval in ptychographic coherent diffractive imaging
journal, March 2009
- Thibault, Pierre; Dierolf, Martin; Bunk, Oliver
- Ultramicroscopy, Vol. 109, Issue 4
Signal-to-noise criterion for free-propagation imaging techniques at free-electron lasers and synchrotrons
journal, January 2016
- Villanueva-Perez, Pablo; Pedrini, Bill; Mokso, Rajmund
- Optics Express, Vol. 24, Issue 4
Reconstruction of a yeast cell from X-ray diffraction data
journal, June 2006
- Thibault, Pierre; Elser, Veit; Jacobsen, Chris
- Acta Crystallographica Section A Foundations of Crystallography, Vol. 62, Issue 4
Transmission microscopy of unmodified biological materials. Comparative radiation dosages with electrons and ultrasoft X-ray photons
journal, January 1976
- Sayre, D.; Kirz, J.; Feder, R.
- Ultramicroscopy, Vol. 2
Diffraction-limited storage rings – a window to the science of tomorrow
journal, August 2014
- Eriksson, Mikael; van der Veen, J. Friso; Quitmann, Christoph
- Journal of Synchrotron Radiation, Vol. 21, Issue 5
Incorrect support and missing center tolerances of phasing algorithms
journal, January 2010
- Huang, Xiaojing; Nelson, Johanna; Steinbrener, Jan
- Optics Express, Vol. 18, Issue 25
Soft X-ray microscopes and their biological applications
journal, February 1995
- Kirz, Janos; Jacobsen, Chris; Howells, Malcolm
- Quarterly Reviews of Biophysics, Vol. 28, Issue 1
An improved ptychographical phase retrieval algorithm for diffractive imaging
journal, September 2009
- Maiden, Andrew M.; Rodenburg, John M.
- Ultramicroscopy, Vol. 109, Issue 10
Simultaneous phase and amplitude extraction from a single defocused image of a homogeneous object
journal, April 2002
- Paganin, D.; Mayo, S. C.; Gureyev, T. E.
- Journal of Microscopy, Vol. 206, Issue 1
Fourier shell correlation threshold criteria
journal, September 2005
- van Heel, Marin; Schatz, Michael
- Journal of Structural Biology, Vol. 151, Issue 3
How many photons are needed to reconstruct random objects in coherent X-ray diffractive imaging?
journal, January 2017
- Jahn, T.; Wilke, R. N.; Chushkin, Y.
- Acta Crystallographica Section A Foundations and Advances, Vol. 73, Issue 1
Artifact mitigation of ptychography integrated with on-the-fly scanning probe microscopy
journal, July 2017
- Huang, Xiaojing; Yan, Hanfei; Ge, Mingyuan
- Applied Physics Letters, Vol. 111, Issue 2
Near-field ptychography: phase retrieval for inline holography using a structured illumination
journal, May 2013
- Stockmar, Marco; Cloetens, Peter; Zanette, Irene
- Scientific Reports, Vol. 3, Issue 1
Effectiveness of iterative algorithms in recovering phase in the presence of noise
journal, December 2006
- Williams, Garth; Pfeifer, Mark; Vartanyants, Ivan
- Acta Crystallographica Section A Foundations of Crystallography, Vol. 63, Issue 1
The correlation averaging of a regularly arranged bacterial cell envelope protein
journal, August 1982
- Saxton, W. O.; Baumeister, W.
- Journal of Microscopy, Vol. 127, Issue 2
X-Ray Interactions: Photoabsorption, Scattering, Transmission, and Reflection at E = 50-30,000 eV, Z = 1-92
journal, July 1993
- Henke, B. L.; Gullikson, E. M.; Davis, J. C.
- Atomic Data and Nuclear Data Tables, Vol. 54, Issue 2, p. 181-342
Three dimensions, two microscopes, one code: Automatic differentiation for x-ray nanotomography beyond the depth of focus limit
journal, March 2020
- Du, Ming; Nashed, Youssef S. G.; Kandel, Saugat
- Science Advances, Vol. 6, Issue 13
Beugung im inhomogenen Primärstrahlwellenfeld. I. Prinzip einer Phasenmessung von Elektronenbeungungsinterferenzen
journal, July 1969
- Hoppe, W.
- Acta Crystallographica Section A, Vol. 25, Issue 4
An assessment of the resolution limitation due to radiation-damage in X-ray diffraction microscopy
journal, March 2009
- Howells, M. R.; Beetz, T.; Chapman, H. N.
- Journal of Electron Spectroscopy and Related Phenomena, Vol. 170, Issue 1-3
Optimization-based image reconstruction in computed tomography by alternating direction method with ordered subsets
journal, June 2017
- Cai, Ailong; Wang, Linyuan; Li, Lei
- Journal of X-Ray Science and Technology, Vol. 25, Issue 3
On estimating signal-to-noise ratio using the sample correlation coefficient (Corresp.)
journal, January 1974
- Bershad, N.; Rockmore, A.
- IEEE Transactions on Information Theory, Vol. 20, Issue 1
Reconstruction of an object from the modulus of its Fourier transform
journal, January 1978
- Fienup, J. R.
- Optics Letters, Vol. 3, Issue 1, p. 27-29
Image contrast in high-resolution electron microscopy of biological macromolecules: TMV in ice
journal, October 1992
- Henderson, Richard
- Ultramicroscopy, Vol. 46, Issue 1-4
Potential operating region for ultrasoft x-ray microscopy of biological materials
journal, June 1977
- Sayre, D.; Kirz, J.; Feder, R.
- Science, Vol. 196, Issue 4296
Hard-X-Ray Lensless Imaging of Extended Objects
journal, January 2007
- Rodenburg, J. M.; Hurst, A. C.; Cullis, A. G.
- Physical Review Letters, Vol. 98, Issue 3
Similarity measures between images
journal, January 1987
- Van Heel, Marin
- Ultramicroscopy, Vol. 21, Issue 1
Applications of algorithmic differentiation to phase retrieval algorithms
journal, January 2014
- Jurling, Alden S.; Fienup, James R.
- Journal of the Optical Society of America A, Vol. 31, Issue 7
Signal-to-noise ratio of electron micrographs obtained by cross correlation
journal, July 1975
- Frank, J.; Al-Ali, L.
- Nature, Vol. 256, Issue 5516
X-Ray Holographic Imaging of Hydrated Biological Cells in Solution
journal, January 2015
- Bartels, M.; Krenkel, M.; Haber, J.
- Physical Review Letters, Vol. 114, Issue 4
Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials
journal, January 2018
- Du, Ming; Jacobsen, Chris
- Ultramicroscopy, Vol. 184
Holotomography: Quantitative phase tomography with micrometer resolution using hard synchrotron radiation x rays
journal, November 1999
- Cloetens, P.; Ludwig, W.; Baruchel, J.
- Applied Physics Letters, Vol. 75, Issue 19
A Study in Diffraction Microscopy with Special Reference to X-Rays
journal, January 1952
- Baez, Albert V.
- Journal of the Optical Society of America, Vol. 42, Issue 10