Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin
Abstract
Subsurface sediments of the Sonora Margin (Guaymas Basin), located in proximity of active cold seep sites were explored. The taxonomic and functional diversity of bacterial and archaeal communities were investigated from 1 to 10 meters below the seafloor. Microbial community structure and abundance and distribution of dominant populations were assessed using complementary molecular approaches (Ribosomal Intergenic Spacer Analysis, 16S rRNA libraries and quantitative PCR with an extensive primers set) and correlated to comprehensive geochemical data. Moreover the metabolic potentials and functional traits of the microbial community were also identified using the GeoChip functional gene microarray and metabolic rates. The active microbial community structure in the Sonora Margin sediments was related to deep subsurface ecosystems (Marine Benthic Groups B and D, Miscellaneous Crenarchaeotal Group, Chloroflexi and Candidate divisions) and remained relatively similar throughout the sediment section, despite defined biogeochemical gradients. However, relative abundances of bacterial and archaeal dominant lineages were significantly correlated with organic carbon quantity and origin. Consistently, metabolic pathways for the degradation and assimilation of this organic carbon as well as genetic potentials for the transformation of detrital organic matters, hydrocarbons and recalcitrant substrates were detected, suggesting that chemoorganotrophic microorganisms may dominate the microbial community of the Sonora Marginmore »
- Authors:
-
- UMR6197, ZI de la pointe du Diable, Plouzane (France). Laboratoire de Microbiologie des Environnements Extremes. Ifremer; Universite de Bretagne Occidentale, Plouzane (France). UMR6197, ZI de la pointe du Diable. Laboratoire de Microbiologie des Environnements Extreme. Centre National de la Recherche Scientifique (CNRS)
- Cardiff University (United Kingdom)
- UMR6197, ZI de la pointe du Diable, Plouzane (France). Laboratoire Etude des Environnements Profonds. Ifremer
- UMR6197, ZI de la pointe du Diable, Plouzane (France). Laboratoire de Microbiologie des Environnements Extremes. Ifremer; Universite de Bretagne Occidentale, Plouzane (France). UMR6197, ZI de la pointe du Diable. Laboratoire de Microbiologie des Environnements Extreme. Centre National de la Recherche Scientifique (CNRS); Universite de Brest, Plouzane (France). Domaines Oce´aniques IUEM. UMR6538
- ZI de la pointe du Diable, Plouzane (France). Laboratoire des Environnements Sedimentaires. Geosciences Marines. Ifremer
- University of Oklahoma, Norman, OK (United States)
- University of Oklahoma, Norman, OK (United States); Tsinghua University, Beijing (China); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER); French Research Institute for Exploitation of the Sea (IFREMER)
- OSTI Identifier:
- 1627721
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- PLoS ONE
- Additional Journal Information:
- Journal Volume: 9; Journal Issue: 8; Journal ID: ISSN 1932-6203
- Publisher:
- Public Library of Science
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; sediment; ribosomal RNA; Archaean biology; bacteria; metabolic pathways; methane; cold seeps; community structure
Citation Formats
Vigneron, Adrien, Cruaud, Perrine, Roussel, Erwan G., Pignet, Patricia, Caprais, Jean-Claude, Callac, Nolwenn, Ciobanu, Maria-Cristina, Godfroy, Anne, Cragg, Barry A., Parkes, John R., Van Nostrand, Joy D., He, Zhili, Zhou, Jizhong, and Toffin, Laurent. Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin. United States: N. p., 2014.
Web. doi:10.1371/journal.pone.0104427.
Vigneron, Adrien, Cruaud, Perrine, Roussel, Erwan G., Pignet, Patricia, Caprais, Jean-Claude, Callac, Nolwenn, Ciobanu, Maria-Cristina, Godfroy, Anne, Cragg, Barry A., Parkes, John R., Van Nostrand, Joy D., He, Zhili, Zhou, Jizhong, & Toffin, Laurent. Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin. United States. https://doi.org/10.1371/journal.pone.0104427
Vigneron, Adrien, Cruaud, Perrine, Roussel, Erwan G., Pignet, Patricia, Caprais, Jean-Claude, Callac, Nolwenn, Ciobanu, Maria-Cristina, Godfroy, Anne, Cragg, Barry A., Parkes, John R., Van Nostrand, Joy D., He, Zhili, Zhou, Jizhong, and Toffin, Laurent. Wed .
"Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin". United States. https://doi.org/10.1371/journal.pone.0104427. https://www.osti.gov/servlets/purl/1627721.
@article{osti_1627721,
title = {Phylogenetic and Functional Diversity of Microbial Communities Associated with Subsurface Sediments of the Sonora Margin, Guaymas Basin},
author = {Vigneron, Adrien and Cruaud, Perrine and Roussel, Erwan G. and Pignet, Patricia and Caprais, Jean-Claude and Callac, Nolwenn and Ciobanu, Maria-Cristina and Godfroy, Anne and Cragg, Barry A. and Parkes, John R. and Van Nostrand, Joy D. and He, Zhili and Zhou, Jizhong and Toffin, Laurent},
abstractNote = {Subsurface sediments of the Sonora Margin (Guaymas Basin), located in proximity of active cold seep sites were explored. The taxonomic and functional diversity of bacterial and archaeal communities were investigated from 1 to 10 meters below the seafloor. Microbial community structure and abundance and distribution of dominant populations were assessed using complementary molecular approaches (Ribosomal Intergenic Spacer Analysis, 16S rRNA libraries and quantitative PCR with an extensive primers set) and correlated to comprehensive geochemical data. Moreover the metabolic potentials and functional traits of the microbial community were also identified using the GeoChip functional gene microarray and metabolic rates. The active microbial community structure in the Sonora Margin sediments was related to deep subsurface ecosystems (Marine Benthic Groups B and D, Miscellaneous Crenarchaeotal Group, Chloroflexi and Candidate divisions) and remained relatively similar throughout the sediment section, despite defined biogeochemical gradients. However, relative abundances of bacterial and archaeal dominant lineages were significantly correlated with organic carbon quantity and origin. Consistently, metabolic pathways for the degradation and assimilation of this organic carbon as well as genetic potentials for the transformation of detrital organic matters, hydrocarbons and recalcitrant substrates were detected, suggesting that chemoorganotrophic microorganisms may dominate the microbial community of the Sonora Margin subsurface sediments.},
doi = {10.1371/journal.pone.0104427},
journal = {PLoS ONE},
number = 8,
volume = 9,
place = {United States},
year = {Wed Aug 06 00:00:00 EDT 2014},
month = {Wed Aug 06 00:00:00 EDT 2014}
}
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Works referenced in this record:
GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer
journal, May 2012
- Lu, Zhenmei; He, Zhili; Parisi, Victoria A.
- Environmental Science & Technology, Vol. 46, Issue 11
Paleoenvironmental imprint on subseafloor microbial communities in Western Mediterranean Sea Quaternary sediments
journal, January 2012
- Ciobanu, M. -C.; Rabineau, M.; Dorz, L.
- Biogeosciences Discussions
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
journal, July 2008
- Biddle, J. F.; Fitz-Gibbon, S.; Schuster, S. C.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 30
Distributions of Microbial Activities in Deep Subseafloor Sediments
journal, December 2004
- D'Hondt, S.
- Science, Vol. 306, Issue 5705
Significant contribution of Archaea to extant biomass in marine subsurface sediments
journal, July 2008
- Lipp, Julius S.; Morono, Yuki; Inagaki, Fumio
- Nature, Vol. 454, Issue 7207
Distribution of major elements in Atlantic surface sediments (36°N-49°S): Imprint of terrigenous input and continental weathering: ATLANTIC SURFACE SEDIMENT COMPOSITION
journal, January 2012
- Govin, Aline; Holzwarth, Ulrike; Heslop, David
- Geochemistry, Geophysics, Geosystems, Vol. 13, Issue 1
Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru
journal, February 2006
- Biddle, J. F.; Lipp, J. S.; Lever, M. A.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 10
Microbial Ecology of the Dark Ocean above, at, and below the Seafloor
journal, June 2011
- Orcutt, B. N.; Sylvan, J. B.; Knab, N. J.
- Microbiology and Molecular Biology Reviews, Vol. 75, Issue 2
Functional ecology of an Antarctic Dry Valley
journal, May 2013
- Chan, Y.; Van Nostrand, J. D.; Zhou, J.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 22
High abundance of JS-1- and Chloroflexi -related Bacteria in deeply buried marine sediments revealed by quantitative, real-time PCR
journal, May 2010
- Blazejak, Anna; Schippers, Axel
- FEMS Microbiology Ecology, Vol. 72, Issue 2
Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment
journal, March 2012
- Lomstein, Bente Aa.; Langerhuus, Alice T.; D’Hondt, Steven
- Nature, Vol. 484, Issue 7392
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
journal, November 2007
- Teske, Andreas; Sørensen, Ketil B.
- The ISME Journal, Vol. 2, Issue 1
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
journal, April 2010
- He, Zhili; Deng, Ye; Van Nostrand, Joy D.
- The ISME Journal, Vol. 4, Issue 9
The Natural History of Nitrogen Fixation
journal, March 2004
- Raymond, Jason; Siefert, Janet L.; Staples, Christopher R.
- Molecular Biology and Evolution, Vol. 21, Issue 3
The archaeal ‘TACK’ superphylum and the origin of eukaryotes
journal, December 2011
- Guy, Lionel; Ettema, Thijs J. G.
- Trends in Microbiology, Vol. 19, Issue 12
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
journal, March 2004
- Newberry, Carole J.; Webster, Gordon; Cragg, Barry A.
- Environmental Microbiology, Vol. 6, Issue 3
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi
journal, April 2012
- Loffler, F. E.; Yan, J.; Ritalahti, K. M.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 63, Issue Pt 2
Anaerobic Oxidation of Methane: Progress with an Unknown Process
journal, October 2009
- Knittel, Katrin; Boetius, Antje
- Annual Review of Microbiology, Vol. 63, Issue 1
Bacterial communities and syntrophic associations involved in anaerobic oxidation of methane process of the Sonora Margin cold seeps, Guaymas Basin: AOM involved bacteria at Sonora Margin
journal, December 2013
- Vigneron, Adrien; Cruaud, Perrine; Pignet, Patricia
- Environmental Microbiology, Vol. 16, Issue 9
Global distribution of microbial abundance and biomass in subseafloor sediment
journal, August 2012
- Kallmeyer, J.; Pockalny, R.; Adhikari, R. R.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 40
Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
journal, May 2012
- Kubo, Kyoko; Lloyd, Karen G.; F. Biddle, Jennifer
- The ISME Journal, Vol. 6, Issue 10
Late Quaternary climate change record from two long sediment cores from Guaymas Basin, Gulf of California
journal, January 2005
- Cheshire, Heather; Thurow, Jürgen; Nederbragt, Alexandra J.
- Journal of Quaternary Science, Vol. 20, Issue 5
Microbial diversity and stratification of South Pacific abyssal marine sediments: South Pacific abyssal sediment microbial communities
journal, September 2011
- Durbin, Alan M.; Teske, Andreas
- Environmental Microbiology, Vol. 13, Issue 12
Short-term variability in halocarbons in relation to phytoplankton pigments in coastal waters of the central eastern Arabian Sea
journal, July 2010
- Roy, Rajdeep
- Estuarine, Coastal and Shelf Science, Vol. 88, Issue 3
Microbial colonization of basaltic glasses in hydrothermal organic-rich sediments at Guaymas Basin
journal, January 2013
- Callac, Nolwenn; Rommevaux-Jestin, Céline; Rouxel, Olivier
- Frontiers in Microbiology, Vol. 4
Geochemical evidence of terrigenous influence in deep-sea sediments up to 8°S in the Central Indian Basin
journal, June 1989
- Nath, B. Nagender; Rao, V. Purnachandra; Becker, Klaus P.
- Marine Geology, Vol. 87, Issue 2-4
Deep-water hydrocarbon seeps in Guaymas Basin, Gulf of California
journal, January 1990
- Simoneit, B. R. T.; Lonsdale, P. F.; Edmond, J. M.
- Applied Geochemistry, Vol. 5, Issue 1-2
Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers
journal, September 2011
- Mussmann, M.; Brito, I.; Pitcher, A.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 40
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
journal, February 2010
- Meyerdierks, Anke; Kube, Michael; Kostadinov, Ivaylo
- Environmental Microbiology, Vol. 12, Issue 2
Deep sub-seafloor prokaryotes stimulated at interfaces over geological time
journal, July 2005
- Parkes, R. John; Webster, Gordon; Cragg, Barry A.
- Nature, Vol. 436, Issue 7049
Presence and diversity of anammox bacteria in cold hydrocarbon-rich seeps and hydrothermal vent sediments of the Guaymas Basin
journal, January 2013
- Russ, Lina; Kartal, Boran; op den Camp, Huub J. M.
- Frontiers in Microbiology, Vol. 4
Active Archaeal Communities at Cold Seep Sediments Populated by Siboglinidae Tubeworms from the Storegga Slide
journal, April 2010
- Lazar, Cassandre Sara; Dinasquet, Julie; Pignet, Patricia
- Microbial Ecology, Vol. 60, Issue 3
Archaeal and anaerobic methane oxidizer communities in the Sonora Margin cold seeps, Guaymas Basin (Gulf of California)
journal, February 2013
- Vigneron, Adrien; Cruaud, Perrine; Pignet, Patricia
- The ISME Journal, Vol. 7, Issue 8
Archaeal communities associated with shallow to deep subseafloor sediments of the New Caledonia Basin
journal, September 2009
- Roussel, Erwan G.; Sauvadet, Anne-Laure; Chaduteau, Carine
- Environmental Microbiology, Vol. 11, Issue 9
Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia
journal, October 2009
- Dekas, A. E.; Poretsky, R. S.; Orphan, V. J.
- Science, Vol. 326, Issue 5951
Recent studies on bacterial populations and processes in subseafloor sediments: A review
journal, March 2000
- Parkes, R. John; Cragg, Barry A.; Wellsbury, Peter
- Hydrogeology Journal, Vol. 8, Issue 1
Gene expression in the deep biosphere
journal, June 2013
- Orsi, William D.; Edgcomb, Virginia P.; Christman, Glenn D.
- Nature, Vol. 499, Issue 7457
Predominant archaea in marine sediments degrade detrital proteins
journal, March 2013
- Lloyd, Karen G.; Schreiber, Lars; Petersen, Dorthe G.
- Nature, Vol. 496, Issue 7444
Correlating microbial community profiles with geochemical data in highly stratified sediments from the Arctic Mid-Ocean Ridge
journal, October 2012
- Jorgensen, S. L.; Hannisdal, B.; Lanzen, A.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 42
Genetic and functional properties of uncultivated MCG archaea assessed by metagenome and gene expression analyses
journal, October 2013
- Meng, Jun; Xu, Jun; Qin, Dan
- The ISME Journal, Vol. 8, Issue 3
Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico Hydrocarbon Seep
journal, January 2010
- Lloyd, Karen G.; Albert, Daniel B.; Biddle, Jennifer F.
- PLoS ONE, Vol. 5, Issue 1
Deep subseafloor microbial cells on physiological standby
journal, October 2011
- Jorgensen, B. B.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 45
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
journal, February 2006
- Inagaki, F.; Nunoura, T.; Nakagawa, S.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 8
Analysis of dissolved gases by headspace sampling gas chromatography with column and detector switching. Preliminary results
journal, January 1996
- Sarradin, Pierre-Marie; Caprais, Jean-Claude
- Analytical Communications, Vol. 33, Issue 10
Extending the Sub-Sea-Floor Biosphere
journal, May 2008
- Roussel, E. G.; Bonavita, M. -A. C.; Querellou, J.
- Science, Vol. 320, Issue 5879
Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark)
journal, May 2007
- Parkes, R. John; Cragg, Barry A.; Banning, Natasha
- Environmental Microbiology, Vol. 9, Issue 5
Carbon and nitrogen assimilation in deep subseafloor microbial cells
journal, October 2011
- Morono, Y.; Terada, T.; Nishizawa, M.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 45
Anaerobic Catabolism of Aromatic Compounds: a Genetic and Genomic View
journal, March 2009
- Carmona, M.; Zamarro, M. T.; Blazquez, B.
- Microbiology and Molecular Biology Reviews, Vol. 73, Issue 1
Active Archaeal Communities at Cold Seep Sediments Populated by Siboglinidae Tubeworms from the Storegga Slide
journal, April 2010
- Lazar, Cassandre Sara; Dinasquet, Julie; Pignet, Patricia
- Microbial Ecology, Vol. 60, Issue 3
Organic geochemistry of recent sediments from Guaymas Basin, Gulf of California
journal, August 1979
- Simoneit, Bernd R. T.; Mazurek, M. A.; Brenner, S.
- Deep Sea Research Part A. Oceanographic Research Papers, Vol. 26, Issue 8
The archaeal ‘TACK’ superphylum and the origin of eukaryotes
journal, December 2011
- Guy, Lionel; Ettema, Thijs J. G.
- Trends in Microbiology, Vol. 19, Issue 12
Nucleic acid concentrations (DNA, RNA) in the continental and deep-sea sediments of the eastern Mediterranean: relationships with seasonally varying organic inputs and bacterial dynamics
journal, June 1999
- Danovaro, R.; Dell’anno, A.; Pusceddu, A.
- Deep Sea Research Part I: Oceanographic Research Papers, Vol. 46, Issue 6
GeoChip-Based Analysis of Microbial Functional Gene Diversity in a Landfill Leachate-Contaminated Aquifer
journal, May 2012
- Lu, Zhenmei; He, Zhili; Parisi, Victoria A.
- Environmental Science & Technology, Vol. 46, Issue 11
Uncultured archaea in deep marine subsurface sediments: have we caught them all?
journal, November 2007
- Teske, Andreas; Sørensen, Ketil B.
- The ISME Journal, Vol. 2, Issue 1
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
journal, April 2010
- He, Zhili; Deng, Ye; Van Nostrand, Joy D.
- The ISME Journal, Vol. 4, Issue 9
Deep sub-seafloor prokaryotes stimulated at interfaces over geological time
journal, July 2005
- Parkes, R. John; Webster, Gordon; Cragg, Barry A.
- Nature, Vol. 436, Issue 7049
Significant contribution of Archaea to extant biomass in marine subsurface sediments
journal, July 2008
- Lipp, Julius S.; Morono, Yuki; Inagaki, Fumio
- Nature, Vol. 454, Issue 7207
Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment
journal, March 2012
- Lomstein, Bente Aa.; Langerhuus, Alice T.; D’Hondt, Steven
- Nature, Vol. 484, Issue 7392
Analysis of dissolved gases by headspace sampling gas chromatography with column and detector switching. Preliminary results
journal, January 1996
- Sarradin, Pierre-Marie; Caprais, Jean-Claude
- Analytical Communications, Vol. 33, Issue 10
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
journal, February 2006
- Inagaki, F.; Nunoura, T.; Nakagawa, S.
- Proceedings of the National Academy of Sciences, Vol. 103, Issue 8
Thaumarchaeotes abundant in refinery nitrifying sludges express amoA but are not obligate autotrophic ammonia oxidizers
journal, September 2011
- Mussmann, M.; Brito, I.; Pitcher, A.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 40
Carbon and nitrogen assimilation in deep subseafloor microbial cells
journal, October 2011
- Morono, Y.; Terada, T.; Nishizawa, M.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue 45
Global distribution of microbial abundance and biomass in subseafloor sediment
journal, August 2012
- Kallmeyer, J.; Pockalny, R.; Adhikari, R. R.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 40
Tracking microbial habitats in subseafloor sediments
journal, October 2012
- Teske, Andreas P.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 42
Functional ecology of an Antarctic Dry Valley
journal, May 2013
- Chan, Y.; Van Nostrand, J. D.; Zhou, J.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 22
The Natural History of Nitrogen Fixation
journal, March 2004
- Raymond, Jason; Siefert, Janet L.; Staples, Christopher R.
- Molecular Biology and Evolution, Vol. 21, Issue 3
Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190
journal, March 2004
- Newberry, Carole J.; Webster, Gordon; Cragg, Barry A.
- Environmental Microbiology, Vol. 6, Issue 3
Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerrak, Denmark)
journal, May 2007
- Parkes, R. John; Cragg, Barry A.; Banning, Natasha
- Environmental Microbiology, Vol. 9, Issue 5
Archaeal communities associated with shallow to deep subseafloor sediments of the New Caledonia Basin
journal, September 2009
- Roussel, Erwan G.; Sauvadet, Anne-Laure; Chaduteau, Carine
- Environmental Microbiology, Vol. 11, Issue 9
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
journal, February 2010
- Meyerdierks, Anke; Kube, Michael; Kostadinov, Ivaylo
- Environmental Microbiology, Vol. 12, Issue 2
High abundance of JS-1- and Chloroflexi -related Bacteria in deeply buried marine sediments revealed by quantitative, real-time PCR
journal, May 2010
- Blazejak, Anna; Schippers, Axel
- FEMS Microbiology Ecology, Vol. 72, Issue 2
Extending the Sub-Sea-Floor Biosphere
journal, May 2008
- Roussel, E. G.; Bonavita, M. -A. C.; Querellou, J.
- Science, Vol. 320, Issue 5879
Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia
journal, October 2009
- Dekas, A. E.; Poretsky, R. S.; Orphan, V. J.
- Science, Vol. 326, Issue 5951
Dehalogenation Activities and Distribution of Reductive Dehalogenase Homologous Genes in Marine Subsurface Sediments
journal, September 2009
- Futagami, Taiki; Morono, Yuki; Terada, Takeshi
- Applied and Environmental Microbiology, Vol. 75, Issue 21
Archaeal Populations in Hypersaline Sediments Underlying Orange Microbial Mats in the Napoli Mud Volcano
journal, May 2011
- Lazar, Cassandre Sara; L'Haridon, Stéphane; Pignet, Patricia
- Applied and Environmental Microbiology, Vol. 77, Issue 9
Isolation and Characterization of a Methylotrophic Marine Methanogen, Methanococcoides methylutens gen. nov., sp. nov
journal, January 1983
- Sowers, Kevin R.; Ferry, James G.
- Applied and Environmental Microbiology, Vol. 45, Issue 2
Comparison of Nucleic Acid Hybridization and Fluorometry for Measurement of the Relationship between RNA/DNA Ratio and Growth Rate in a Marine Bacterium
journal, January 1993
- Kerkhof, L.; Ward, B. B.
- Applied and Environmental Microbiology, Vol. 59, Issue 5
Estimating the Growth Rate of Slowly Growing Marine Bacteria from RNA Content
journal, January 1993
- Kemp, P. F.; Lee, S.; LaRoche, J.
- Applied and Environmental Microbiology, Vol. 59, Issue 8
A meta cleavage pathway for 4-chlorobenzoate, an intermediate in the metabolism of 4-chlorobiphenyl by Pseudomonas cepacia P166.
journal, January 1995
- Arensdorf, J. J.; Focht, D. D.
- Applied and environmental microbiology, Vol. 61, Issue 2
DNA recovery from soils of diverse composition.
journal, January 1996
- Zhou, J.; Bruns, M. A.; Tiedje, J. M.
- Applied and environmental microbiology, Vol. 62, Issue 2
Fingerprinting Microbial Assemblages from the Oxic/Anoxic Chemocline of the Black Sea
journal, November 2003
- Vetriani, Costantino; Tran, Hiep V.; Kerkhof, Lee J.
- Applied and Environmental Microbiology, Vol. 69, Issue 11
Microbial Communities Associated with Geological
Horizons in Coastal Subseafloor Sediments from the Sea of
Okhotsk
journal, December 2003
- Inagaki, Fumio; Suzuki, Masae; Takai, Ken
- Applied and Environmental Microbiology, Vol. 69, Issue 12
Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico Hydrocarbon Seep
text, January 2010
- G., Lloyd, Karen; F., Biddle, Jennifer; B., Albert, Daniel
- The University of North Carolina at Chapel Hill University Libraries
Microbial colonization of basaltic glasses in hydrothermal organic-rich sediments at Guaymas Basin
journal, January 2013
- Callac, Nolwenn; Rommevaux-Jestin, Céline; Rouxel, Olivier
- Frontiers in Microbiology, Vol. 4
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- Li, Wei; Wang, Meng Meng; Wang, Xi Guang
- Scientific Reports, Vol. 6, Issue 1
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- Portail, Marie; Olu, Karine; Dubois, Stanislas F.
- PLOS ONE, Vol. 11, Issue 9
Microbial Communities and Organic Matter Composition in Surface and Subsurface Sediments of the Helgoland Mud Area, North Sea
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- Oni, Oluwatobi E.; Schmidt, Frauke; Miyatake, Tetsuro
- Frontiers in Microbiology, Vol. 6
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- Warren, Lesley A.; Kendra, Kathryn E.; Brady, Allyson L.
- Frontiers in Microbiology, Vol. 6
Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility
journal, April 2016
- Vigneron, Adrien; Alsop, Eric B.; Chambers, Brian
- Applied and Environmental Microbiology, Vol. 82, Issue 8
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journal, May 2016
- Li, Wei; Wang, Meng Meng; Wang, Xi Guang
- Scientific Reports, Vol. 6, Issue 1
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journal, September 2016
- Portail, Marie; Olu, Karine; Dubois, Stanislas F.
- PLOS ONE, Vol. 11, Issue 9
Sulfur Biogeochemistry of an Oil Sands Composite Tailings Deposit
journal, February 2016
- Warren, Lesley A.; Kendra, Kathryn E.; Brady, Allyson L.
- Frontiers in Microbiology, Vol. 6
A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments
journal, June 2016
- Natarajan, Vengadesh Perumal; Zhang, Xinxu; Morono, Yuki
- Frontiers in Microbiology, Vol. 07
Microbial and Isotopic Evidence for Methane Cycling in Hydrocarbon-Containing Groundwater from the Pennsylvania Region
journal, April 2017
- Vigneron, Adrien; Bishop, Andrew; Alsop, Eric B.
- Frontiers in Microbiology, Vol. 8
Molecular Ecology of Hypersaline Microbial Mats: Current Insights and New Directions
journal, January 2016
- Wong, Hon; Ahmed-Cox, Aria; Burns, Brendan
- Microorganisms, Vol. 4, Issue 1