Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria
Abstract
Estuaries are among the most productive habitats on the planet. Bacteria in estuary sediments control the turnover of organic carbon and the cycling of nitrogen and sulfur. These communities are complex and primarily made up of uncultured lineages, thus little is known about how ecological and metabolic processes are partitioned in sediments.
- Authors:
-
- Univ. of Texas, Austin, TX (United States). Marine Science Institute, Department of Marine Science; Univ. of Michigan, Ann Arbor, MI (United States). Dept. of Earth and Environmental Sciences
- Univ. of North Carolina, Chapel Hill, NC (United States). Dept. of Marine Sciences; Univ. of Bremen (Germany). Organic Geochemistry Group, MARUM Center for Marine Environmental Sciences, Department of Geosciences
- Univ. of North Carolina, Chapel Hill, NC (United States). Dept. of Marine Sciences
- Univ. of Michigan, Ann Arbor, MI (United States). Dept. of Earth and Environmental Sciences; Univ. of Michigan, Ann Arbor, MI (United States). Center for Computational Medicine and Bioinformatic
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC)
- OSTI Identifier:
- 1627044
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Microbiome
- Additional Journal Information:
- Journal Volume: 3; Journal Issue: 1; Journal ID: ISSN 2049-2618
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- Microbiology; Estuary; Sediment; Metagenome; Sulfur; Nitrogen; Carbon; Candidate phyla; Anaerobic respiration; Sulfate reduction
Citation Formats
Baker, Brett J., Lazar, Cassandre Sara, Teske, Andreas P., and Dick, Gregory J. Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. United States: N. p., 2015.
Web. doi:10.1186/s40168-015-0077-6.
Baker, Brett J., Lazar, Cassandre Sara, Teske, Andreas P., & Dick, Gregory J. Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria. United States. https://doi.org/10.1186/s40168-015-0077-6
Baker, Brett J., Lazar, Cassandre Sara, Teske, Andreas P., and Dick, Gregory J. Mon .
"Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria". United States. https://doi.org/10.1186/s40168-015-0077-6. https://www.osti.gov/servlets/purl/1627044.
@article{osti_1627044,
title = {Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria},
author = {Baker, Brett J. and Lazar, Cassandre Sara and Teske, Andreas P. and Dick, Gregory J.},
abstractNote = {Estuaries are among the most productive habitats on the planet. Bacteria in estuary sediments control the turnover of organic carbon and the cycling of nitrogen and sulfur. These communities are complex and primarily made up of uncultured lineages, thus little is known about how ecological and metabolic processes are partitioned in sediments.},
doi = {10.1186/s40168-015-0077-6},
journal = {Microbiome},
number = 1,
volume = 3,
place = {United States},
year = {Mon Apr 13 00:00:00 EDT 2015},
month = {Mon Apr 13 00:00:00 EDT 2015}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Estuarine and Coastal Ocean Carbon Paradox: CO 2 Sinks or Sites of Terrestrial Carbon Incineration?
journal, January 2011
- Cai, Wei-Jun
- Annual Review of Marine Science, Vol. 3, Issue 1
The changing carbon cycle of the coastal ocean
journal, December 2013
- Bauer, James E.; Cai, Wei-Jun; Raymond, Peter A.
- Nature, Vol. 504, Issue 7478
Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
journal, July 2008
- Biddle, J. F.; Fitz-Gibbon, S.; Schuster, S. C.
- Proceedings of the National Academy of Sciences, Vol. 105, Issue 30
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
journal, May 2011
- Miller, Christopher S.; Baker, Brett J.; Thomas, Brian C.
- Genome Biology, Vol. 12, Issue 5
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
journal, January 2013
- Hug, Laura A.; Castelle, Cindy J.; Wrighton, Kelly C.
- Microbiome, Vol. 1, Issue 1
Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill
journal, July 2012
- Beazley, Melanie J.; Martinez, Robert J.; Rajan, Suja
- PLoS ONE, Vol. 7, Issue 7
Salt marsh sediment diversity: a test of the variability of the rare biosphere among environmental replicates
journal, June 2012
- Bowen, Jennifer L.; Morrison, Hilary G.; Hobbie, John E.
- The ISME Journal, Vol. 6, Issue 11
Stratification of Archaeal communities in shallow sediments of the Pearl River Estuary, Southern China
journal, January 2011
- Jiang, Lijing; Zheng, Yanping; Chen, Jinquan
- Antonie van Leeuwenhoek, Vol. 99, Issue 4
Bacterial Community Composition of South China Sea Sediments through Pyrosequencing-Based Analysis of 16S rRNA Genes
journal, October 2013
- Zhu, Daochen; Tanabe, Shoko-Hosoi; Yang, Chong
- PLoS ONE, Vol. 8, Issue 10
Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
journal, May 2012
- Kubo, Kyoko; Lloyd, Karen G.; F. Biddle, Jennifer
- The ISME Journal, Vol. 6, Issue 10
Microbial Extracellular Enzymes and the Marine Carbon Cycle
journal, January 2011
- Arnosti, Carol
- Annual Review of Marine Science, Vol. 3, Issue 1
The carbohydrate-active enzymes database (CAZy) in 2013
journal, November 2013
- Lombard, Vincent; Golaconda Ramulu, Hemalatha; Drula, Elodie
- Nucleic Acids Research, Vol. 42, Issue D1
Phylogenetic Distribution of Potential Cellulases in Bacteria
journal, December 2012
- Berlemont, Renaud; Martiny, Adam C.
- Applied and Environmental Microbiology, Vol. 79, Issue 5
Molecular indicators of diagenetic status in marine organic matter
journal, December 1997
- Wakeham, Stuart G.; Lee, Cindy; Hedges, John I.
- Geochimica et Cosmochimica Acta, Vol. 61, Issue 24
Predominant archaea in marine sediments degrade detrital proteins
journal, March 2013
- Lloyd, Karen G.; Schreiber, Lars; Petersen, Dorthe G.
- Nature, Vol. 496, Issue 7444
Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi
journal, August 2013
- Wasmund, Kenneth; Schreiber, Lars; Lloyd, Karen G.
- The ISME Journal, Vol. 8, Issue 2
Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio
journal, November 2008
- Sekiguchi, Y.; Muramatsu, M.; Imachi, H.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 58, Issue 11
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer
journal, March 2014
- Wrighton, Kelly C.; Castelle, Cindy J.; Wilkins, Michael J.
- The ISME Journal, Vol. 8, Issue 7
Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation
journal, October 2012
- Sieber, Jessica R.; McInerney, Michael J.; Gunsalus, Robert P.
- Annual Review of Microbiology, Vol. 66, Issue 1
Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes
journal, February 2009
- Loy, Alexander; Duller, Stephan; Baranyi, Christian
- Environmental Microbiology, Vol. 11, Issue 2
A Thiosulfate Shunt in the Sulfur Cycle of Marine Sediments
journal, July 1990
- Jorgensen, B. B.
- Science, Vol. 249, Issue 4965
The narX and narL genes encoding the nitrate-sensing regulators of Escherichia coli are homologous to a family of prokaryotic two-component regulatory genes
journal, January 1989
- Nohno, Tsutomu; Noji, Sumihare; Taniguchi, Shigehiko
- Nucleic Acids Research, Vol. 17, Issue 8
Regulation of dsr genes encoding proteins responsible for the oxidation of stored sulfur in Allochromatium vinosum
journal, December 2009
- Grimm, F.; Dobler, N.; Dahl, C.
- Microbiology, Vol. 156, Issue 3
Thioalkalispira microaerophila gen. nov., sp. nov., a novel lithoautotrophic, sulfur-oxidizing bacterium from a soda lake
journal, November 2002
- Sorokin, D. Y.
- INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 52, Issue 6
Anaerobic growth of the haloalkaliphilic denitrifying sulfur-oxidizing bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocyanate
journal, July 2004
- Sorokin, D. Yu.
- Microbiology, Vol. 150, Issue 7
Environmental controls on intragroup diversity of the uncultured benthic archaea of the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA) : MCG intragroup diversity in estuary sediments
journal, January 2015
- Lazar, Cassandre Sara; Biddle, Jennifer F.; Meador, Travis B.
- Environmental Microbiology, Vol. 17, Issue 7
Nitrogen fixation and dissimilatory nitrate reduction to ammonium (DNRA) support nitrogen dynamics in Texas estuaries
journal, January 2006
- Gardner, Wayne S.; McCarthy, Mark J.; An, Soonmo
- Limnology and Oceanography, Vol. 51, Issue 1part2
Refined NrfA Phylogeny Improves PCR-Based nrfA Gene Detection
journal, January 2014
- Welsh, Allana; Chee-Sanford, Joanne C.; Connor, Lynn M.
- Applied and Environmental Microbiology, Vol. 80, Issue 7
Structure and Function of Formate-Dependent Cytochrome c Nitrite Reductase, NrfA
book, January 2011
- Einsle, Oliver
- Methods in Enzymology
Reconstruction of Extracellular Respiratory Pathways for Iron(III) Reduction in Shewanella Oneidensis Strain MR-1
journal, January 2012
- Coursolle, Dan; Gralnick, Jeffrey A.
- Frontiers in Microbiology, Vol. 3
Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals
journal, March 2013
- White, G. F.; Shi, Z.; Shi, L.
- Proceedings of the National Academy of Sciences, Vol. 110, Issue 16
The pio Operon Is Essential for Phototrophic Fe(II) Oxidation in Rhodopseudomonas palustris TIE-1
journal, December 2006
- Jiao, Y.; Newman, D. K.
- Journal of Bacteriology, Vol. 189, Issue 5
Role of the Tetraheme Cytochrome CymA in Anaerobic Electron Transport in Cells of Shewanella putrefaciens MR-1 with Normal Levels of Menaquinone
journal, January 2000
- Myers, Judith M.; Myers, Charles R.
- Journal of Bacteriology, Vol. 182, Issue 1
Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria
journal, January 2012
- Carlson, H. K.; Iavarone, A. T.; Gorur, A.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 5
Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment: Sulfur-oxidizing prokaryotes in tidal sediments
journal, December 2010
- Lenk, Sabine; Arnds, Julia; Zerjatke, Katrice
- Environmental Microbiology, Vol. 13, Issue 3
Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament
journal, September 2013
- MacGregor, Barbara J.; Biddle, Jennifer F.; Harbort, Christopher
- Marine Genomics, Vol. 11
Global distribution of nitrous oxide production and N inputs in freshwater and coastal marine ecosystems
journal, March 1998
- Seitzinger, Sybil P.; Kroeze, Carolien
- Global Biogeochemical Cycles, Vol. 12, Issue 1
Links between metabolic plasticity and functional redundancy in freshwater bacterioplankton communities
journal, January 2013
- Comte, Jérôme; Fauteux, Lisa; Giorgio, Paul A. del
- Frontiers in Microbiology, Vol. 4
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
journal, April 2012
- Peng, Y.; Leung, H. C. M.; Yiu, S. M.
- Bioinformatics, Vol. 28, Issue 11
Community-wide analysis of microbial genome sequence signatures
journal, January 2009
- Dick, Gregory J.; Andersson, Anders F.; Baker, Brett J.
- Genome Biology, Vol. 10, Issue 8
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
journal, August 2012
- Sharon, I.; Morowitz, M. J.; Thomas, B. C.
- Genome Research, Vol. 23, Issue 1
Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
journal, September 2012
- Wrighton, K. C.; Thomas, B. C.; Sharon, I.
- Science, Vol. 337, Issue 6102
IMG: the integrated microbial genomes database and comparative analysis system
journal, December 2011
- Markowitz, V. M.; Chen, I. -M. A.; Palaniappan, K.
- Nucleic Acids Research, Vol. 40, Issue D1
Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community
journal, January 2010
- Allgaier, Martin; Reddy, Amitha; Park, Joshua I.
- PLoS ONE, Vol. 5, Issue 1
Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer
journal, November 2007
- Sorek, R.; Zhu, Y.; Creevey, C. J.
- Science, Vol. 318, Issue 5855
PhyloSift: phylogenetic analysis of genomes and metagenomes
journal, January 2014
- Darling, Aaron E.; Jospin, Guillaume; Lowe, Eric
- PeerJ, Vol. 2
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
journal, August 2013
- Castelle, Cindy J.; Hug, Laura A.; Wrighton, Kelly C.
- Nature Communications, Vol. 4, Issue 1
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
journal, October 2003
- Guindon, Stéphane; Gascuel, Olivier
- Systematic Biology, Vol. 52, Issue 5
ARB: a software environment for sequence data
journal, February 2004
- Ludwig, W.
- Nucleic Acids Research, Vol. 32, Issue 4
Works referencing / citing this record:
Microbial community composition and functional potential in Bothnian Sea sediments is linked to Fe and S dynamics and the quality of organic matter
journal, January 2020
- Rasigraf, Olivia; Helmond, Niels A. G. M.; Frank, Jeroen
- Limnology and Oceanography, Vol. 65, Issue S1
Mangrove Sediment Microbiome: Adaptive Microbial Assemblages and Their Routed Biogeochemical Processes in Yunxiao Mangrove National Nature Reserve, China
journal, October 2018
- Lin, Xiaolan; Hetharua, Buce; Lin, Lian
- Microbial Ecology, Vol. 78, Issue 1
Evidence for complete nitrification in enrichment culture of tidal sediments and diversity analysis of clade a comammox Nitrospira in natural environments
journal, August 2018
- Yu, Chendi; Hou, Lijun; Zheng, Yanling
- Applied Microbiology and Biotechnology, Vol. 102, Issue 21
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction
journal, January 2016
- Seitz, Kiley W.; Lazar, Cassandre S.; Hinrichs, Kai-Uwe
- The ISME Journal, Vol. 10, Issue 7
Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments
journal, February 2016
- Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M.
- The ISME Journal, Vol. 10, Issue 8
Genomic repertoire of the Woeseiaceae/JTB255, cosmopolitan and abundant core members of microbial communities in marine sediments
journal, January 2017
- Mußmann, Marc; Pjevac, Petra; Krüger, Karen
- The ISME Journal, Vol. 11, Issue 5
Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches
journal, January 2017
- Lazar, C. S.; Baker, B. J.; Seitz, K. W.
- The ISME Journal, Vol. 11, Issue 5
RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria
journal, May 2016
- Wrighton, Kelly C.; Castelle, Cindy J.; Varaljay, Vanessa A.
- The ISME Journal, Vol. 10, Issue 11
Energy and carbon metabolisms in a deep terrestrial subsurface fluid microbial community
journal, June 2017
- Momper, Lily; Jungbluth, Sean P.; Lee, Michael D.
- The ISME Journal, Vol. 11, Issue 10
High-quality genome sequences of uncultured microbes by assembly of read clouds
journal, October 2018
- Bishara, Alex; Moss, Eli L.; Kolmogorov, Mikhail
- Nature Biotechnology, Vol. 36, Issue 11
Genome-based microbial ecology of anammox granules in a full-scale wastewater treatment system
journal, March 2016
- Speth, Daan R.; in ’t Zandt, Michiel H.; Guerrero-Cruz, Simon
- Nature Communications, Vol. 7, Issue 1
Life on N2O: deciphering the ecophysiology of N2O respiring bacterial communities in a continuous culture
journal, February 2018
- Conthe, Monica; Wittorf, Lea; Kuenen, J. Gijs
- The ISME Journal, Vol. 12, Issue 4
Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities
journal, February 2018
- Barnum, Tyler P.; Figueroa, Israel A.; Carlström, Charlotte I.
- The ISME Journal, Vol. 12, Issue 6
Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes
journal, July 2018
- Wong, Hon Lun; White, Richard Allen; Visscher, Pieter T.
- The ISME Journal, Vol. 12, Issue 11
Genome analyses of uncultured TG2/ZB3 bacteria in ‘Margulisbacteria’ specifically attached to ectosymbiotic spirochetes of protists in the termite gut
journal, October 2018
- Utami, Yuniar Devi; Kuwahara, Hirokazu; Igai, Katsura
- The ISME Journal, Vol. 13, Issue 2
Quantifying population-specific growth in benthic bacterial communities under low oxygen using H218O
journal, February 2019
- Coskun, Ömer K.; Özen, Volkan; Wankel, Scott D.
- The ISME Journal, Vol. 13, Issue 6
Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities
journal, January 2020
- Hoffmann, Katy; Bienhold, Christina; Buttigieg, Pier Luigi
- The ISME Journal, Vol. 14, Issue 4
Hydrogen-based metabolism as an ancestral trait in lineages sibling to the Cyanobacteria
journal, January 2019
- Matheus Carnevali, Paula B.; Schulz, Frederik; Castelle, Cindy J.
- Nature Communications, Vol. 10, Issue 1
Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments
journal, April 2019
- Dong, Xiyang; Greening, Chris; Rattray, Jayne E.
- Nature Communications, Vol. 10, Issue 1
Microbial diversity analysis and screening for novel xylanase enzymes from the sediment of the Lobios Hot Spring in Spain
journal, August 2019
- Knapik, Kamila; Becerra, Manuel; González-Siso, María-Isabel
- Scientific Reports, Vol. 9, Issue 1
The role of wetland microorganisms in plant-litter decomposition and soil organic matter formation: a critical review
journal, August 2018
- Yarwood, Stephanie A.
- FEMS Microbiology Ecology, Vol. 94, Issue 11
Discovered by genomics: putative reductive dehalogenases with N-terminus transmembrane helixes
journal, April 2019
- Atashgahi, Siavash
- FEMS Microbiology Ecology, Vol. 95, Issue 5
On the maverick Planctomycetes
journal, July 2018
- Wiegand, Sandra; Jogler, Mareike; Jogler, Christian
- FEMS Microbiology Reviews, Vol. 42, Issue 6
Microbial metabolism and adaptations in Atribacteria-dominated methane hydrate sediments
journal, June 2021
- Glass, Jennifer B.; Ranjan, Piyush; Kretz, Cecilia B.
- Environmental Microbiology
Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments: Genomic content of uncultured benthic Bathyarchaeota
journal, January 2016
- Lazar, Cassandre Sara; Baker, Brett J.; Seitz, Kiley
- Environmental Microbiology, Vol. 18, Issue 4
Genome-centric resolution of microbial diversity, metabolism and interactions in anaerobic digestion: Genome-centric resolution through deep metagenomics
journal, July 2016
- Vanwonterghem, Inka; Jensen, Paul D.; Rabaey, Korneel
- Environmental Microbiology, Vol. 18, Issue 9
Permeability shapes bacterial communities in sublittoral surface sediments: Permeability shapes benthic bacterial communities
journal, February 2017
- Probandt, D.; Knittel, K.; Tegetmeyer, H. E.
- Environmental Microbiology, Vol. 19, Issue 4
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond: Unveiling interactions in microbial mats
journal, May 2017
- Saghaï, Aurélien; Gutiérrez-Preciado, Ana; Deschamps, Philippe
- Environmental Microbiology, Vol. 19, Issue 6
A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles: A year in the life of a thrombolite
journal, December 2017
- Louyakis, Artemis S.; Gourlé, Hadrien; Casaburi, Giorgio
- Environmental Microbiology, Vol. 20, Issue 2
Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments
journal, July 2018
- Spring, Stefan; Bunk, Boyke; Spröer, Cathrin
- Environmental Microbiology, Vol. 20, Issue 7
Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses: Chemosynthetic bacteria on iron-sulfur deposits
journal, January 2019
- Meier, Dimitri V.; Pjevac, Petra; Bach, Wolfgang
- Environmental Microbiology, Vol. 21, Issue 2
The life sulfuric: microbial ecology of sulfur cycling in marine sediments: Microbial sulfur cycling in marine sediments
journal, May 2017
- Wasmund, Kenneth; Mußmann, Marc; Loy, Alexander
- Environmental Microbiology Reports, Vol. 9, Issue 4
Diversity and ecology of and biomineralization by magnetotactic bacteria: Diversity of magnetotactic bacteria
journal, June 2017
- Lin, Wei; Pan, Yongxin; Bazylinski, Dennis A.
- Environmental Microbiology Reports, Vol. 9, Issue 4
Insights into microbial community structure and function from a shallow, simulated CO 2 ‐leakage aquifer demonstrate microbial selection and adaptation
journal, August 2018
- Gulliver, Djuna; Lipus, Daniel; Ross, Daniel
- Environmental Microbiology Reports, Vol. 11, Issue 3
Effects of microbial products and extra carbon on water quality and bacterial community in a fish polyculture system
journal, February 2019
- Zheng, Xiafei; Wang, Yan; Zhang, Dongdong
- Aquaculture Research, Vol. 50, Issue 4
Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments
journal, May 2016
- Tully, Benjamin J.; Heidelberg, John F.
- Applied and Environmental Microbiology, Vol. 82, Issue 14
Microbial Organic Matter Degradation Potential in Baltic Sea Sediments Is Influenced by Depositional Conditions and In Situ Geochemistry
journal, November 2018
- Zinke, Laura A.; Glombitza, Clemens; Bird, Jordan T.
- Applied and Environmental Microbiology, Vol. 85, Issue 4
Homoacetogenesis in Deep-Sea Chloroflexi , as Inferred by Single-Cell Genomics, Provides a Link to Reductive Dehalogenation in Terrestrial Dehalococcoidetes
journal, December 2017
- Sewell, Holly L.; Kaster, Anne-Kristin; Spormann, Alfred M.
- mBio, Vol. 8, Issue 6
Determining Microbial Roles in Ecosystem Function: Redefining Microbial Food Webs and Transcending Kingdom Barriers
journal, June 2019
- Handley, Kim M.
- mSystems, Vol. 4, Issue 3
Recovering complete and draft population genomes from metagenome datasets
journal, March 2016
- Sangwan, Naseer; Xia, Fangfang; Gilbert, Jack A.
- Microbiome, Vol. 4, Issue 1
Post-translational modifications are enriched within protein functional groups important to bacterial adaptation within a deep-sea hydrothermal vent environment
journal, September 2016
- Zhang, Weipeng; Sun, Jin; Cao, Huiluo
- Microbiome, Vol. 4, Issue 1
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
journal, August 2017
- Dombrowski, Nina; Seitz, Kiley W.; Teske, Andreas P.
- Microbiome, Vol. 5, Issue 1
Predominance and high diversity of genes associated to denitrification in metagenomes of subantarctic coastal sediments exposed to urban pollution
journal, November 2018
- Calderoli, Priscila A.; Espínola, Fernando J.; Dionisi, Hebe M.
- PLOS ONE, Vol. 13, Issue 11
Geomicrobiology of a seawater-influenced active sulfuric acid cave
journal, August 2019
- D’Angeli, Ilenia M.; Ghezzi, Daniele; Leuko, Stefan
- PLOS ONE, Vol. 14, Issue 8
Microbial metabolisms in an abyssal ferromanganese crust from the Takuyo-Daigo Seamount as revealed by metagenomics
journal, November 2019
- Kato, Shingo; Hirai, Miho; Ohkuma, Moriya
- PLOS ONE, Vol. 14, Issue 11
Coral-Associated Bacterial Diversity Is Conserved across Two Deep-Sea Anthothela Species
journal, April 2016
- Lawler, Stephanie N.; Kellogg, Christina A.; France, Scott C.
- Frontiers in Microbiology, Vol. 7
Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-Sea Bacteria in Guaymas Basin Hydrothermal Plumes
journal, July 2016
- Li, Meng; Jain, Sunit; Dick, Gregory J.
- Frontiers in Microbiology, Vol. 7
Polycyclic Aromatic Hydrocarbon-Induced Changes in Bacterial Community Structure under Anoxic Nitrate Reducing Conditions
journal, November 2016
- Martirani-Von Abercron, Sophie-Marie; Pacheco, Daniel; Benito-Santano, Patricia
- Frontiers in Microbiology, Vol. 7
Position-Specific Metabolic Probing and Metagenomics of Microbial Communities Reveal Conserved Central Carbon Metabolic Network Activities at High Temperatures
journal, July 2019
- Thomas, Scott C.; Tamadonfar, Kevin O.; Seymour, Cale O.
- Frontiers in Microbiology, Vol. 10
Tree Species Shape Soil Bacterial Community Structure and Function in Temperate Deciduous Forests
journal, July 2019
- Dukunde, Amélie; Schneider, Dominik; Schmidt, Marcus
- Frontiers in Microbiology, Vol. 10
Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone
journal, January 2016
- Lüke, Claudia; Speth, Daan R.; Kox, Martine A. R.
- PeerJ, Vol. 4