FoXS: a web server for rapid computation and fitting of SAXS profiles
Abstract
Small angle X-ray scattering (SAXS) is an increasingly common technique for low-resolution structural characterization of molecules in solution. SAXS experiment determines the scattering intensity of a molecule as a function of spatial frequency, termed SAXS profile. SAXS profiles can contribute to many applications, such as comparing a conformation in solution with the corresponding X-ray structure, modeling a flexible or multi-modular protein, and assembling a macromolecular complex from its subunits. These applications require rapid computation of a SAXS profile from a molecular structure. FoXS (Fast X-Ray Scattering) is a rapid method for computing a SAXS profile of a given structure and for matching of the computed and experimental profiles. Here, we describe the interface and capabilities of the FoXS web server (http://salilab.org/foxs).
- Authors:
-
- Univ. of California, San Francisco, CA (United States)
- Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division
- OSTI Identifier:
- 1625483
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nucleic Acids Research
- Additional Journal Information:
- Journal Volume: 38; Journal Issue: Web Server; Journal ID: ISSN 0305-1048
- Publisher:
- Oxford University Press
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Biochemistry & Molecular Biology
Citation Formats
Schneidman-Duhovny, D., Hammel, M., and Sali, A. FoXS: a web server for rapid computation and fitting of SAXS profiles. United States: N. p., 2010.
Web. doi:10.1093/nar/gkq461.
Schneidman-Duhovny, D., Hammel, M., & Sali, A. FoXS: a web server for rapid computation and fitting of SAXS profiles. United States. https://doi.org/10.1093/nar/gkq461
Schneidman-Duhovny, D., Hammel, M., and Sali, A. Thu .
"FoXS: a web server for rapid computation and fitting of SAXS profiles". United States. https://doi.org/10.1093/nar/gkq461. https://www.osti.gov/servlets/purl/1625483.
@article{osti_1625483,
title = {FoXS: a web server for rapid computation and fitting of SAXS profiles},
author = {Schneidman-Duhovny, D. and Hammel, M. and Sali, A.},
abstractNote = {Small angle X-ray scattering (SAXS) is an increasingly common technique for low-resolution structural characterization of molecules in solution. SAXS experiment determines the scattering intensity of a molecule as a function of spatial frequency, termed SAXS profile. SAXS profiles can contribute to many applications, such as comparing a conformation in solution with the corresponding X-ray structure, modeling a flexible or multi-modular protein, and assembling a macromolecular complex from its subunits. These applications require rapid computation of a SAXS profile from a molecular structure. FoXS (Fast X-Ray Scattering) is a rapid method for computing a SAXS profile of a given structure and for matching of the computed and experimental profiles. Here, we describe the interface and capabilities of the FoXS web server (http://salilab.org/foxs).},
doi = {10.1093/nar/gkq461},
journal = {Nucleic Acids Research},
number = Web Server,
volume = 38,
place = {United States},
year = {Thu May 27 00:00:00 EDT 2010},
month = {Thu May 27 00:00:00 EDT 2010}
}
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