DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: A simplified parameterization of isoprene-epoxydiol-derived secondary organic aerosol (IEPOX-SOA) for global chemistry and climate models: a case study with GEOS-Chem v11-02-rc

Abstract

Secondary organic aerosol derived from isoprene epoxydiols (IEPOX-SOA) is thought to contribute the dominant fraction of total isoprene SOA, but the current volatility-based lumped SOA parameterizations are not appropriate to represent the reactive uptake of IEPOX onto acidified aerosols. A full explicit modeling of this chemistry is however computationally expensive owing to the many species and reactions tracked, which makes it difficult to include it in chemistry–climate models for long-term studies. Here we present three simplified parameterizations (version 1.0) for IEPOX-SOA simulation, based on an approximate analytical/fitting solution of the IEPOX-SOA yield and formation timescale. The yield and timescale can then be directly calculated using the global model fields of oxidants, NO, aerosol pH and other key properties, and dry deposition rates. The advantage of the proposed parameterizations is that they do not require the simulation of the intermediates while retaining the key physicochemical dependencies. We have implemented the new parameterizations into the GEOS-Chem v11-02-rc chemical transport model, which has two empirical treatments for isoprene SOA (the volatility-basis-set, VBS, approach and a fixed 3% yield parameterization), and compared all of them to the case with detailed fully explicit chemistry. The best parameterization (PAR3) captures the global tropospheric burden of IEPOX-SOA andmore » its spatiotemporal distribution (R2=0.94) vs. those simulated by the full chemistry, while being more computationally efficient (~5 times faster), and accurately captures the response to changes in NOx and SO2 emissions. On the other hand, the constant 3 % yield that is now the default in GEOS-Chem deviates strongly (R2=0.66), as does the VBS (R2=0.47, 49% underestimation), with neither parameterization capturing the response to emission changes. With the advent of new mass spectrometry instrumentation, many detailed SOA mechanisms are being developed, which will challenge global and especially climate models with their computational cost. The methods developed in this study can be applied to other SOA pathways, which can allow including accurate SOA simulations in climate and global modeling studies in the future.« less

Authors:
ORCiD logo; ; ORCiD logo; ORCiD logo; ORCiD logo; ORCiD logo; ; ORCiD logo; ORCiD logo
Publication Date:
Research Org.:
Univ. of Colorado, Boulder, CO (United States)
Sponsoring Org.:
USDOE Office of Science (SC)
OSTI Identifier:
1542516
Alternate Identifier(s):
OSTI ID: 1612642
Grant/Contract Number:  
SC0016559
Resource Type:
Published Article
Journal Name:
Geoscientific Model Development (Online)
Additional Journal Information:
Journal Name: Geoscientific Model Development (Online) Journal Volume: 12 Journal Issue: 7; Journal ID: ISSN 1991-9603
Publisher:
Copernicus Publications, EGU
Country of Publication:
Germany
Language:
English
Subject:
58 GEOSCIENCES; Geology

Citation Formats

Jo, Duseong S., Hodzic, Alma, Emmons, Louisa K., Marais, Eloise A., Peng, Zhe, Nault, Benjamin A., Hu, Weiwei, Campuzano-Jost, Pedro, and Jimenez, Jose L. A simplified parameterization of isoprene-epoxydiol-derived secondary organic aerosol (IEPOX-SOA) for global chemistry and climate models: a case study with GEOS-Chem v11-02-rc. Germany: N. p., 2019. Web. doi:10.5194/gmd-12-2983-2019.
Jo, Duseong S., Hodzic, Alma, Emmons, Louisa K., Marais, Eloise A., Peng, Zhe, Nault, Benjamin A., Hu, Weiwei, Campuzano-Jost, Pedro, & Jimenez, Jose L. A simplified parameterization of isoprene-epoxydiol-derived secondary organic aerosol (IEPOX-SOA) for global chemistry and climate models: a case study with GEOS-Chem v11-02-rc. Germany. https://doi.org/10.5194/gmd-12-2983-2019
Jo, Duseong S., Hodzic, Alma, Emmons, Louisa K., Marais, Eloise A., Peng, Zhe, Nault, Benjamin A., Hu, Weiwei, Campuzano-Jost, Pedro, and Jimenez, Jose L. Mon . "A simplified parameterization of isoprene-epoxydiol-derived secondary organic aerosol (IEPOX-SOA) for global chemistry and climate models: a case study with GEOS-Chem v11-02-rc". Germany. https://doi.org/10.5194/gmd-12-2983-2019.
@article{osti_1542516,
title = {A simplified parameterization of isoprene-epoxydiol-derived secondary organic aerosol (IEPOX-SOA) for global chemistry and climate models: a case study with GEOS-Chem v11-02-rc},
author = {Jo, Duseong S. and Hodzic, Alma and Emmons, Louisa K. and Marais, Eloise A. and Peng, Zhe and Nault, Benjamin A. and Hu, Weiwei and Campuzano-Jost, Pedro and Jimenez, Jose L.},
abstractNote = {Secondary organic aerosol derived from isoprene epoxydiols (IEPOX-SOA) is thought to contribute the dominant fraction of total isoprene SOA, but the current volatility-based lumped SOA parameterizations are not appropriate to represent the reactive uptake of IEPOX onto acidified aerosols. A full explicit modeling of this chemistry is however computationally expensive owing to the many species and reactions tracked, which makes it difficult to include it in chemistry–climate models for long-term studies. Here we present three simplified parameterizations (version 1.0) for IEPOX-SOA simulation, based on an approximate analytical/fitting solution of the IEPOX-SOA yield and formation timescale. The yield and timescale can then be directly calculated using the global model fields of oxidants, NO, aerosol pH and other key properties, and dry deposition rates. The advantage of the proposed parameterizations is that they do not require the simulation of the intermediates while retaining the key physicochemical dependencies. We have implemented the new parameterizations into the GEOS-Chem v11-02-rc chemical transport model, which has two empirical treatments for isoprene SOA (the volatility-basis-set, VBS, approach and a fixed 3% yield parameterization), and compared all of them to the case with detailed fully explicit chemistry. The best parameterization (PAR3) captures the global tropospheric burden of IEPOX-SOA and its spatiotemporal distribution (R2=0.94) vs. those simulated by the full chemistry, while being more computationally efficient (~5 times faster), and accurately captures the response to changes in NOx and SO2 emissions. On the other hand, the constant 3 % yield that is now the default in GEOS-Chem deviates strongly (R2=0.66), as does the VBS (R2=0.47, 49% underestimation), with neither parameterization capturing the response to emission changes. With the advent of new mass spectrometry instrumentation, many detailed SOA mechanisms are being developed, which will challenge global and especially climate models with their computational cost. The methods developed in this study can be applied to other SOA pathways, which can allow including accurate SOA simulations in climate and global modeling studies in the future.},
doi = {10.5194/gmd-12-2983-2019},
journal = {Geoscientific Model Development (Online)},
number = 7,
volume = 12,
place = {Germany},
year = {Mon Jul 15 00:00:00 EDT 2019},
month = {Mon Jul 15 00:00:00 EDT 2019}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.5194/gmd-12-2983-2019

Citation Metrics:
Cited by: 20 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Simulating Aqueous-Phase Isoprene-Epoxydiol (IEPOX) Secondary Organic Aerosol Production During the 2013 Southern Oxidant and Aerosol Study (SOAS)
journal, April 2017

  • Budisulistiorini, Sri Hapsari; Nenes, Athanasios; Carlton, Annmarie G.
  • Environmental Science & Technology, Vol. 51, Issue 9
  • DOI: 10.1021/acs.est.6b05750

Formation of Low Volatility Organic Compounds and Secondary Organic Aerosol from Isoprene Hydroxyhydroperoxide Low-NO Oxidation
journal, July 2015

  • Krechmer, Jordan E.; Coggon, Matthew M.; Massoli, Paola
  • Environmental Science & Technology, Vol. 49, Issue 17
  • DOI: 10.1021/acs.est.5b02031

Southeast Atmosphere Studies: learning from model-observation syntheses
journal, January 2018

  • Mao, Jingqiu; Carlton, Annmarie; Cohen, Ronald C.
  • Atmospheric Chemistry and Physics, Vol. 18, Issue 4
  • DOI: 10.5194/acp-18-2615-2018

Global data set of biogenic VOC emissions calculated by the MEGAN model over the last 30 years
journal, January 2014

  • Sindelarova, K.; Granier, C.; Bouarar, I.
  • Atmospheric Chemistry and Physics, Vol. 14, Issue 17
  • DOI: 10.5194/acp-14-9317-2014

The AeroCom evaluation and intercomparison of organic aerosol in global models
journal, January 2014

  • Tsigaridis, K.; Daskalakis, N.; Kanakidou, M.
  • Atmospheric Chemistry and Physics, Vol. 14, Issue 19
  • DOI: 10.5194/acp-14-10845-2014

Global modeling of organic aerosol: the importance of reactive nitrogen (NO x and NO 3 )
journal, January 2010

  • Pye, H. O. T.; Chan, A. W. H.; Barkley, M. P.
  • Atmospheric Chemistry and Physics, Vol. 10, Issue 22
  • DOI: 10.5194/acp-10-11261-2010

An Overview of CMIP5 and the Experiment Design
journal, April 2012

  • Taylor, Karl E.; Stouffer, Ronald J.; Meehl, Gerald A.
  • Bulletin of the American Meteorological Society, Vol. 93, Issue 4
  • DOI: 10.1175/BAMS-D-11-00094.1

Efficient Isoprene Secondary Organic Aerosol Formation from a Non-IEPOX Pathway
journal, September 2016

  • Liu, Jiumeng; D’Ambro, Emma L.; Lee, Ben H.
  • Environmental Science & Technology, Vol. 50, Issue 18
  • DOI: 10.1021/acs.est.6b01872

Modeling anthropogenically controlled secondary organic aerosols in a megacity: a simplified framework for global and climate models
journal, January 2011


A review of Secondary Organic Aerosol (SOA) formation from isoprene
journal, January 2009

  • Carlton, A. G.; Wiedinmyer, C.; Kroll, J. H.
  • Atmospheric Chemistry and Physics, Vol. 9, Issue 14
  • DOI: 10.5194/acp-9-4987-2009

Historical (1850–2000) gridded anthropogenic and biomass burning emissions of reactive gases and aerosols: methodology and application
journal, January 2010

  • Lamarque, J. -F.; Bond, T. C.; Eyring, V.
  • Atmospheric Chemistry and Physics, Vol. 10, Issue 15
  • DOI: 10.5194/acp-10-7017-2010

Real-Time Measurement of Correlated Size and Composition Profiles of Individual Atmospheric Aerosol Particles
journal, January 1996

  • Noble, Christopher A.; Prather, Kimberly A.
  • Environmental Science & Technology, Vol. 30, Issue 9
  • DOI: 10.1021/es950669j

Volatility and lifetime against OH heterogeneous reaction of ambient isoprene-epoxydiols-derived secondary organic aerosol (IEPOX-SOA)
journal, January 2016

  • Hu, Weiwei; Palm, Brett B.; Day, Douglas A.
  • Atmospheric Chemistry and Physics, Vol. 16, Issue 18
  • DOI: 10.5194/acp-16-11563-2016

KinSim: A Research-Grade, User-Friendly, Visual Kinetics Simulator for Chemical-Kinetics and Environmental-Chemistry Teaching
journal, February 2019


Global budgets of atmospheric glyoxal and methylglyoxal, and implications for formation of secondary organic aerosols
journal, January 2008

  • Fu, Tzung-May; Jacob, Daniel J.; Wittrock, Folkard
  • Journal of Geophysical Research, Vol. 113, Issue D15
  • DOI: 10.1029/2007JD009505

The distribution of sea-salt aerosol in the global troposphere
journal, January 2019

  • Murphy, Daniel M.; Froyd, Karl D.; Bian, Huisheng
  • Atmospheric Chemistry and Physics, Vol. 19, Issue 6
  • DOI: 10.5194/acp-19-4093-2019

Sensitivity of chemistry-transport model simulations to the duration of chemical and transport operators: a case study with GEOS-Chem v10-01
journal, January 2016

  • Philip, Sajeev; Martin, Randall V.; Keller, Christoph A.
  • Geoscientific Model Development, Vol. 9, Issue 5
  • DOI: 10.5194/gmd-9-1683-2016

Gas Phase Production and Loss of Isoprene Epoxydiols
journal, February 2014

  • Bates, Kelvin H.; Crounse, John D.; St. Clair, Jason M.
  • The Journal of Physical Chemistry A, Vol. 118, Issue 7
  • DOI: 10.1021/jp4107958

The diverse chemical mixing state of aerosol particles in the southeastern United States
journal, January 2018

  • Bondy, Amy L.; Bonanno, Daniel; Moffet, Ryan C.
  • Atmospheric Chemistry and Physics, Vol. 18, Issue 16
  • DOI: 10.5194/acp-18-12595-2018

A comparison of particle mass spectrometers during the 1999 Atlanta Supersite Project
journal, January 2003


Reactive uptake of N 2 O 5 to internally mixed inorganic and organic particles: the role of organic carbon oxidation state and inferred organic phase separations
journal, January 2014

  • Gaston, C. J.; Thornton, J. A.; Ng, N. L.
  • Atmospheric Chemistry and Physics, Vol. 14, Issue 11
  • DOI: 10.5194/acp-14-5693-2014

Effect of changes in climate and emissions on future sulfate-nitrate-ammonium aerosol levels in the United States: FUTURE INORGANIC AEROSOLS IN THE U.S.
journal, January 2009

  • Pye, H. O. T.; Liao, H.; Wu, S.
  • Journal of Geophysical Research: Atmospheres, Vol. 114, Issue D1
  • DOI: 10.1029/2008JD010701

Sources of carbonaceous aerosols over the United States and implications for natural visibility
journal, January 2003


Kinetics and Products of the Reaction of the First-Generation Isoprene Hydroxy Hydroperoxide (ISOPOOH) with OH
journal, September 2015

  • St. Clair, Jason M.; Rivera-Rios, Jean C.; Crounse, John D.
  • The Journal of Physical Chemistry A, Vol. 120, Issue 9
  • DOI: 10.1021/acs.jpca.5b06532

Reactive intermediates revealed in secondary organic aerosol formation from isoprene
journal, December 2009

  • Surratt, J. D.; Chan, A. W. H.; Eddingsaas, N. C.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 15
  • DOI: 10.1073/pnas.0911114107

Characterization of a real-time tracer for isoprene epoxydiols-derived secondary organic aerosol (IEPOX-SOA) from aerosol mass spectrometer measurements
journal, January 2015

  • Hu, W. W.; Campuzano-Jost, P.; Palm, B. B.
  • Atmospheric Chemistry and Physics, Vol. 15, Issue 20
  • DOI: 10.5194/acp-15-11807-2015

Evolution of Organic Aerosols in the Atmosphere
journal, December 2009


Simulation of semi-explicit mechanisms of SOA formation from glyoxal in aerosol in a 3-D model
journal, January 2014

  • Knote, C.; Hodzic, A.; Jimenez, J. L.
  • Atmospheric Chemistry and Physics, Vol. 14, Issue 12
  • DOI: 10.5194/acp-14-6213-2014

Rapid deposition of oxidized biogenic compounds to a temperate forest
journal, January 2015

  • Nguyen, Tran B.; Crounse, John D.; Teng, Alex P.
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 5
  • DOI: 10.1073/pnas.1418702112

Modeling organic aerosols in a megacity: comparison of simple and complex representations of the volatility basis set approach
journal, January 2011

  • Shrivastava, M.; Fast, J.; Easter, R.
  • Atmospheric Chemistry and Physics, Vol. 11, Issue 13
  • DOI: 10.5194/acp-11-6639-2011

The Present and Future of Secondary Organic Aerosol Direct Forcing on Climate
journal, March 2018


Isoprene-derived secondary organic aerosol in the global aerosol–chemistry–climate model ECHAM6.3.0–HAM2.3–MOZ1.0
journal, January 2018

  • Stadtler, Scarlet; Kühn, Thomas; Schröder, Sabine
  • Geoscientific Model Development, Vol. 11, Issue 8
  • DOI: 10.5194/gmd-11-3235-2018

Reactive Uptake of an Isoprene-Derived Epoxydiol to Submicron Aerosol Particles
journal, September 2014

  • Gaston, Cassandra J.; Riedel, Theran P.; Zhang, Zhenfa
  • Environmental Science & Technology, Vol. 48, Issue 19
  • DOI: 10.1021/es5034266

1.5-Dimensional volatility basis set approach for modeling organic aerosol in CAMx and CMAQ
journal, October 2014


Effect of the Aerosol-Phase State on Secondary Organic Aerosol Formation from the Reactive Uptake of Isoprene-Derived Epoxydiols (IEPOX)
journal, February 2018

  • Zhang, Yue; Chen, Yuzhi; Lambe, Andrew T.
  • Environmental Science & Technology Letters, Vol. 5, Issue 3
  • DOI: 10.1021/acs.estlett.8b00044

Evidence of 1991–2013 decrease of biogenic secondary organic aerosol in response to SO 2 emission controls
journal, May 2017

  • Marais, Eloise A.; Jacob, Daniel J.; Turner, Jay R.
  • Environmental Research Letters, Vol. 12, Issue 5
  • DOI: 10.1088/1748-9326/aa69c8

Global distribution of sea salt aerosols: new constraints from in situ and remote sensing observations
journal, January 2011

  • Jaeglé, L.; Quinn, P. K.; Bates, T. S.
  • Atmospheric Chemistry and Physics, Vol. 11, Issue 7
  • DOI: 10.5194/acp-11-3137-2011

Global modeling of tropospheric chemistry with assimilated meteorology: Model description and evaluation
journal, October 2001

  • Bey, Isabelle; Jacob, Daniel J.; Yantosca, Robert M.
  • Journal of Geophysical Research: Atmospheres, Vol. 106, Issue D19
  • DOI: 10.1029/2001JD000807

Synthesis of the Southeast Atmosphere Studies: Investigating Fundamental Atmospheric Chemistry Questions
journal, March 2018

  • Carlton, Annmarie G.; de Gouw, Joost; Jimenez, Jose L.
  • Bulletin of the American Meteorological Society, Vol. 99, Issue 3
  • DOI: 10.1175/BAMS-D-16-0048.1

The impact of transpacific transport of mineral dust in the United States
journal, February 2007


Aqueous-phase mechanism for secondary organic aerosol formation from isoprene: application to the southeast United States and co-benefit of SO 2 emission controls
journal, January 2016

  • Marais, E. A.; Jacob, D. J.; Jimenez, J. L.
  • Atmospheric Chemistry and Physics, Vol. 16, Issue 3
  • DOI: 10.5194/acp-16-1603-2016

Climate Change 2013 – The Physical Science Basis
book, March 2014


An absorption model of the gas/aerosol partitioning involved in the formation of secondary organic aerosol
journal, January 1994


Measurements of Isoprene-Derived Organosulfates in Ambient Aerosols by Aerosol Time-of-Flight Mass Spectrometry - Part 1: Single Particle Atmospheric Observations in Atlanta
journal, June 2011

  • Hatch, Lindsay E.; Creamean, Jessie M.; Ault, Andrew P.
  • Environmental Science & Technology, Vol. 45, Issue 12
  • DOI: 10.1021/es103944a

Fine particle pH and the partitioning of nitric acid during winter in the northeastern United States: PARTICLE PH AND NITRIC ACID PARTITIONING
journal, September 2016

  • Guo, Hongyu; Sullivan, Amy P.; Campuzano-Jost, Pedro
  • Journal of Geophysical Research: Atmospheres, Vol. 121, Issue 17
  • DOI: 10.1002/2016JD025311

Unexpected Epoxide Formation in the Gas-Phase Photooxidation of Isoprene
journal, August 2009