DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Mathematical model of broadly reactive plasma cell production

Abstract

Strain-specific plasma cells are capable of producing neutralizing antibodies that are essential for clearance of challenging pathogens. These neutralizing antibodies also function as a main defense against disease establishment in a host. However, when a rapidly mutating pathogen infects a host, successful control of the invasion requires shifting the production of plasma cells from strain-specific to broadly reactive. In this study, we develop a mathematical model of germinal center dynamics and use it to predict the events that lead to improved breadth of the plasma cell response. We examine scenarios that lead to germinal centers that are composed of B-cells that come from a single strain-specific clone, a single broadly reactive clone or both clones. We find that the initial B-cell clonal composition, T-follicular helper cell signaling, increased rounds of productive somatic hypermutation, and B-cell selection strength are among the mechanisms differentiating between strain-specific and broadly reactive plasma cell production during infections. Understanding the contribution of these factors to emergence of breadth may assist in boosting broadly reactive plasma cells production.

Authors:
 [1];  [2];  [2]
  1. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  2. Virginia Polytechnic Inst. and State Univ. (Virginia Tech), Blacksburg, VA (United States)
Publication Date:
Research Org.:
Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE; National Science Foundation (NSF); Simons Collaboration
OSTI Identifier:
1606751
Grant/Contract Number:  
AC05-00OR22725; 1813011; 524390; 1853495
Resource Type:
Accepted Manuscript
Journal Name:
Scientific Reports
Additional Journal Information:
Journal Volume: 10; Journal Issue: 1; Journal ID: ISSN 2045-2322
Publisher:
Nature Publishing Group
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; Immunology; Mathematics and computing

Citation Formats

Erwin, Samantha, Childs, Lauren M., and Ciupe, Stanca M. Mathematical model of broadly reactive plasma cell production. United States: N. p., 2020. Web. doi:10.1038/s41598-020-60316-8.
Erwin, Samantha, Childs, Lauren M., & Ciupe, Stanca M. Mathematical model of broadly reactive plasma cell production. United States. https://doi.org/10.1038/s41598-020-60316-8
Erwin, Samantha, Childs, Lauren M., and Ciupe, Stanca M. Tue . "Mathematical model of broadly reactive plasma cell production". United States. https://doi.org/10.1038/s41598-020-60316-8. https://www.osti.gov/servlets/purl/1606751.
@article{osti_1606751,
title = {Mathematical model of broadly reactive plasma cell production},
author = {Erwin, Samantha and Childs, Lauren M. and Ciupe, Stanca M.},
abstractNote = {Strain-specific plasma cells are capable of producing neutralizing antibodies that are essential for clearance of challenging pathogens. These neutralizing antibodies also function as a main defense against disease establishment in a host. However, when a rapidly mutating pathogen infects a host, successful control of the invasion requires shifting the production of plasma cells from strain-specific to broadly reactive. In this study, we develop a mathematical model of germinal center dynamics and use it to predict the events that lead to improved breadth of the plasma cell response. We examine scenarios that lead to germinal centers that are composed of B-cells that come from a single strain-specific clone, a single broadly reactive clone or both clones. We find that the initial B-cell clonal composition, T-follicular helper cell signaling, increased rounds of productive somatic hypermutation, and B-cell selection strength are among the mechanisms differentiating between strain-specific and broadly reactive plasma cell production during infections. Understanding the contribution of these factors to emergence of breadth may assist in boosting broadly reactive plasma cells production.},
doi = {10.1038/s41598-020-60316-8},
journal = {Scientific Reports},
number = 1,
volume = 10,
place = {United States},
year = {Tue Mar 03 00:00:00 EST 2020},
month = {Tue Mar 03 00:00:00 EST 2020}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 2 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

A dynamic T cell–limited checkpoint regulates affinity-dependent B cell entry into the germinal center
journal, May 2011

  • Schwickert, Tanja A.; Victora, Gabriel D.; Fooksman, David R.
  • Journal of Experimental Medicine, Vol. 208, Issue 6
  • DOI: 10.1084/jem.20102477

Immune control of an SIV challenge by a T-cell-based vaccine in rhesus monkeys
journal, November 2008

  • Liu, Jinyan; O’Brien, Kara L.; Lynch, Diana M.
  • Nature, Vol. 457, Issue 7225
  • DOI: 10.1038/nature07469

Vaccine Induction of Lymph Node–Resident Simian Immunodeficiency Virus Env-Specific T Follicular Helper Cells in Rhesus Macaques
journal, January 2016

  • Vargas-Inchaustegui, Diego A.; Demers, Andrew; Shaw, Julia M.
  • The Journal of Immunology, Vol. 196, Issue 4
  • DOI: 10.4049/jimmunol.1502137

Control of TFH cell numbers: why and how?
journal, November 2013

  • Pratama, Alvin; Vinuesa, Carola G.
  • Immunology and Cell Biology, Vol. 92, Issue 1
  • DOI: 10.1038/icb.2013.69

Germinal Centers
journal, April 2012


Immune perturbations in HIV-1–infected individuals who make broadly neutralizing antibodies
journal, June 2016

  • Moody, M. Anthony; Pedroza-Pacheco, Isabela; Vandergrift, Nathan A.
  • Science Immunology, Vol. 1, Issue 1
  • DOI: 10.1126/sciimmunol.aag0851

An analysis of B cell selection mechanisms in germinal centers
journal, September 2006

  • Meyer-Hermann, Michael E.; Maini, Philip K.; Iber, Dagmar
  • Mathematical Medicine and Biology: A Journal of the IMA, Vol. 23, Issue 3
  • DOI: 10.1093/imammb/dql012

Germinal Centers
journal, April 1994


Clonal selection in the germinal centre by regulated proliferation and hypermutation
journal, May 2014

  • Gitlin, Alexander D.; Shulman, Ziv; Nussenzweig, Michel C.
  • Nature, Vol. 509, Issue 7502
  • DOI: 10.1038/nature13300

Simulation of B Cell Affinity Maturation Explains Enhanced Antibody Cross-Reactivity Induced by the Polyvalent Malaria Vaccine AMA1
journal, July 2014

  • Chaudhury, Sidhartha; Reifman, Jaques; Wallqvist, Anders
  • The Journal of Immunology, Vol. 193, Issue 5
  • DOI: 10.4049/jimmunol.1401054

Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys
journal, February 2010

  • Santra, Sampa; Liao, Hua-Xin; Zhang, Ruijin
  • Nature Medicine, Vol. 16, Issue 3, p. 324-328
  • DOI: 10.1038/nm.2108

Paradoxical suppression of poly-specific broadly neutralizing antibodies in the presence of strain-specific neutralizing antibodies following HIV infection
journal, May 2011

  • Ciupe, Stanca M.; De Leenheer, Patrick; Kepler, Thomas B.
  • Journal of Theoretical Biology, Vol. 277, Issue 1
  • DOI: 10.1016/j.jtbi.2011.01.050

T cells that promote B-Cell maturation in systemic autoimmunity: T-helper cells in autoimmunity
journal, April 2012


Visualizing antibody affinity maturation in germinal centers
journal, February 2016


PD-1 regulates germinal center B cell survival and the formation and affinity of long-lived plasma cells
journal, May 2010

  • Good-Jacobson, Kim L.; Szumilas, Courtney G.; Chen, Lieping
  • Nature Immunology, Vol. 11, Issue 6
  • DOI: 10.1038/ni.1877

Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys
journal, February 2010

  • Barouch, Dan H.; O'Brien, Kara L.; Simmons, Nathaniel L.
  • Nature Medicine, Vol. 16, Issue 3, p. 319-323
  • DOI: 10.1038/nm.2089

Mapping the Antigenic and Genetic Evolution of Influenza Virus
journal, July 2004


Quality and quantity of T FH cells are critical for broad antibody development in SHIV AD8 infection
journal, July 2015


Competitive exclusion by autologous antibodies can prevent broad HIV-1 antibodies from arising
journal, August 2015

  • Luo, Shishi; Perelson, Alan S.
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 37
  • DOI: 10.1073/pnas.1505207112

A Population Dynamics Model for Clonal Diversity in a Germinal Center
journal, September 2017


T Follicular Helper Cell Dynamics in Germinal Centers
journal, July 2013


Germinal center dynamics during acute and chronic infection
journal, January 2017

  • Erwin, Samantha; M. Ciupe, Stanca
  • Mathematical Biosciences and Engineering, Vol. 14, Issue 3
  • DOI: 10.3934/mbe.2017037

Dysregulation of germinal centres in autoimmune disease
journal, December 2009

  • Vinuesa, Carola G.; Sanz, Iñaki; Cook, Matthew C.
  • Nature Reviews Immunology, Vol. 9, Issue 12
  • DOI: 10.1038/nri2637

A Theory of Germinal Center B Cell Selection, Division, and Exit
journal, July 2012


Tracing B cell development in human germinal centres by molecular analysis of single cells picked from histological sections.
journal, December 1993


Regulation of the Germinal Center Reaction by Foxp3 + Follicular Regulatory T Cells
journal, October 2011

  • Wollenberg, Ivonne; Agua-Doce, Ana; Hernández, Andrea
  • The Journal of Immunology, Vol. 187, Issue 9
  • DOI: 10.4049/jimmunol.1101328

Germinal Center Dynamics Revealed by Multiphoton Microscopy with a Photoactivatable Fluorescent Reporter
journal, November 2010


Modeling Plasma Virus Concentration during Primary HIV Infection
journal, April 2000

  • Stafford, Max A.; Corey, Lawrence; Cao, Yunzhen
  • Journal of Theoretical Biology, Vol. 203, Issue 3
  • DOI: 10.1006/jtbi.2000.1076

Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing
journal, August 2011


T cell exhaustion during persistent viral infections
journal, May 2015


Optimality of Mutation and Selection in Germinal Centers
journal, June 2010


T Cell Subsets in the Germinal Center: Lessons from the Macaque Model
journal, February 2018


Dynamics of One-pass Germinal Center Models: Implications for Affinity Maturation
journal, January 2000


Germinal centers develop oligoclonally
journal, January 1987

  • Kroese, Frans G. M.; Wubbena, Auk S.; Seijen, Hendrik G.
  • European Journal of Immunology, Vol. 17, Issue 7
  • DOI: 10.1002/eji.1830170726

Tracing B cell development in human germinal centres by molecular analysis of single cells picked from histological sections.
journal, December 1993


Dynamics of One-pass Germinal Center Models: Implications for Affinity Maturation
journal, January 2000


Modeling Plasma Virus Concentration during Primary HIV Infection
journal, April 2000

  • Stafford, Max A.; Corey, Lawrence; Cao, Yunzhen
  • Journal of Theoretical Biology, Vol. 203, Issue 3
  • DOI: 10.1006/jtbi.2000.1076

Germinal Center Dynamics Revealed by Multiphoton Microscopy with a Photoactivatable Fluorescent Reporter
journal, November 2010


A Theory of Germinal Center B Cell Selection, Division, and Exit
journal, July 2012


Human Circulating PD-1+CXCR3−CXCR5+ Memory Tfh Cells Are Highly Functional and Correlate with Broadly Neutralizing HIV Antibody Responses
journal, October 2013


Germinal Center B Cell Dynamics
journal, September 2016


A spatial model of germinal center reactions: cellular adhesion based sorting of B cells results in efficient affinity maturation
journal, May 2003


Control of TFH cell numbers: why and how?
journal, November 2013

  • Pratama, Alvin; Vinuesa, Carola G.
  • Immunology and Cell Biology, Vol. 92, Issue 1
  • DOI: 10.1038/icb.2013.69

Immune control of an SIV challenge by a T-cell-based vaccine in rhesus monkeys
journal, November 2008

  • Liu, Jinyan; O’Brien, Kara L.; Lynch, Diana M.
  • Nature, Vol. 457, Issue 7225
  • DOI: 10.1038/nature07469

Clonal selection in the germinal centre by regulated proliferation and hypermutation
journal, May 2014

  • Gitlin, Alexander D.; Shulman, Ziv; Nussenzweig, Michel C.
  • Nature, Vol. 509, Issue 7502
  • DOI: 10.1038/nature13300

PD-1 regulates germinal center B cell survival and the formation and affinity of long-lived plasma cells
journal, May 2010

  • Good-Jacobson, Kim L.; Szumilas, Courtney G.; Chen, Lieping
  • Nature Immunology, Vol. 11, Issue 6
  • DOI: 10.1038/ni.1877

Mosaic HIV-1 vaccines expand the breadth and depth of cellular immune responses in rhesus monkeys
journal, February 2010

  • Barouch, Dan H.; O'Brien, Kara L.; Simmons, Nathaniel L.
  • Nature Medicine, Vol. 16, Issue 3, p. 319-323
  • DOI: 10.1038/nm.2089

Mosaic vaccines elicit CD8+ T lymphocyte responses that confer enhanced immune coverage of diverse HIV strains in monkeys
journal, February 2010

  • Santra, Sampa; Liao, Hua-Xin; Zhang, Ruijin
  • Nature Medicine, Vol. 16, Issue 3, p. 324-328
  • DOI: 10.1038/nm.2108

Dysregulation of germinal centres in autoimmune disease
journal, December 2009

  • Vinuesa, Carola G.; Sanz, Iñaki; Cook, Matthew C.
  • Nature Reviews Immunology, Vol. 9, Issue 12
  • DOI: 10.1038/nri2637

Competitive exclusion by autologous antibodies can prevent broad HIV-1 antibodies from arising
journal, August 2015

  • Luo, Shishi; Perelson, Alan S.
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 37
  • DOI: 10.1073/pnas.1505207112

A dynamic T cell–limited checkpoint regulates affinity-dependent B cell entry into the germinal center
journal, May 2011

  • Schwickert, Tanja A.; Victora, Gabriel D.; Fooksman, David R.
  • Journal of Experimental Medicine, Vol. 208, Issue 6
  • DOI: 10.1084/jem.20102477

An analysis of B cell selection mechanisms in germinal centers
journal, September 2006

  • Meyer-Hermann, Michael E.; Maini, Philip K.; Iber, Dagmar
  • Mathematical Medicine and Biology: A Journal of the IMA, Vol. 23, Issue 3
  • DOI: 10.1093/imammb/dql012

Mapping the Antigenic and Genetic Evolution of Influenza Virus
journal, July 2004


T Follicular Helper Cell Dynamics in Germinal Centers
journal, July 2013


Immune perturbations in HIV-1–infected individuals who make broadly neutralizing antibodies
journal, June 2016

  • Moody, M. Anthony; Pedroza-Pacheco, Isabela; Vandergrift, Nathan A.
  • Science Immunology, Vol. 1, Issue 1
  • DOI: 10.1126/sciimmunol.aag0851

Quality and quantity of T FH cells are critical for broad antibody development in SHIV AD8 infection
journal, July 2015


How Germinal Centers Evolve Broadly Neutralizing Antibodies: the Breadth of the Follicular Helper T Cell Response
journal, September 2017

  • De Boer, Rob J.; Perelson, Alan S.
  • Journal of Virology, Vol. 91, Issue 22
  • DOI: 10.1128/jvi.00983-17

Germinal Centers
journal, April 1994


T Cell Subsets in the Germinal Center: Lessons from the Macaque Model
journal, February 2018


A Population Dynamics Model for Clonal Diversity in a Germinal Center
journal, September 2017


Germinal center dynamics during acute and chronic infection
journal, January 2017

  • Erwin, Samantha; M. Ciupe, Stanca
  • Mathematical Biosciences and Engineering, Vol. 14, Issue 3
  • DOI: 10.3934/mbe.2017037

Simulation of B Cell Affinity Maturation Explains Enhanced Antibody Cross-Reactivity Induced by the Polyvalent Malaria Vaccine AMA1
journal, July 2014

  • Chaudhury, Sidhartha; Reifman, Jaques; Wallqvist, Anders
  • The Journal of Immunology, Vol. 193, Issue 5
  • DOI: 10.4049/jimmunol.1401054

Reconciling Repertoire Shift with Affinity Maturation: The Role of Deleterious Mutations
journal, April 1999


Optimality of mutation and selection in germinal centers
text, January 2010