DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Functional lipid pairs as building blocks of phase-separated membranes

Abstract

Biological membranes exhibit a great deal of compositional and phase heterogeneity due to hundreds of chemically distinct components. As a result, phase separation processes in cell membranes are extremely difficult to study, especially at the molecular level. It is currently believed that the lateral membrane heterogeneity and the formation of domains, or rafts, are driven by lipid–lipid and lipid–protein interactions. Nevertheless, the underlying mechanisms regulating membrane heterogeneity remain poorly understood. In the present work, we combine inelastic X-ray scattering with molecular dynamics simulations to provide direct evidence for the existence of strongly coupled transient lipid pairs. These lipid pairs manifest themselves experimentally through optical vibrational (a.k.a. phononic) modes observed in binary (1,2-dipalmitoyl- sn -glycero-3-phosphocholine [DPPC]–cholesterol) and ternary (DPPC–1,2-dioleoyl- sn -glycero-3-phosphocholine/1-palmitoyl-2-oleoyl-glycero-3-phosphocholine [DOPC/POPC]–cholesterol) systems. The existence of a phononic gap in these vibrational modes is a direct result of the finite size of patches formed by these lipid pairs. The observation of lipid pairs provides a spatial (subnanometer) and temporal (subnanosecond) window into the lipid–lipid interactions in complex mixtures of saturated/unsaturated lipids and cholesterol. Our findings represent a step toward understanding the lateral organization and dynamics of membrane domains using a well-validated probe with a high spatial and temporal resolution.

Authors:
; ; ; ; ; ; ; ; ORCiD logo
Publication Date:
Research Org.:
Brookhaven National Laboratory (BNL), Upton, NY (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1600087
Alternate Identifier(s):
OSTI ID: 1607979
Report Number(s):
BNL-213789-2020-JAAM
Journal ID: ISSN 0027-8424
Grant/Contract Number:  
SC0012704; 7394; AC05- 00OR22725; AC05-00OR22725
Resource Type:
Published Article
Journal Name:
Proceedings of the National Academy of Sciences of the United States of America
Additional Journal Information:
Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Volume: 117 Journal Issue: 9; Journal ID: ISSN 0027-8424
Publisher:
National Academy of Sciences
Country of Publication:
United States
Language:
English
Subject:
60 APPLIED LIFE SCIENCES; lipid nanoclusters; phononic gaps; optical phonons; picosecond membranes dynamics; lipid pairs

Citation Formats

Soloviov, Dmytro, Cai, Yong Q., Bolmatov, Dima, Suvorov, Alexey, Zhernenkov, Kirill, Zav’yalov, Dmitry, Bosak, Alexey, Uchiyama, Hiroshi, and Zhernenkov, Mikhail. Functional lipid pairs as building blocks of phase-separated membranes. United States: N. p., 2020. Web. doi:10.1073/pnas.1919264117.
Soloviov, Dmytro, Cai, Yong Q., Bolmatov, Dima, Suvorov, Alexey, Zhernenkov, Kirill, Zav’yalov, Dmitry, Bosak, Alexey, Uchiyama, Hiroshi, & Zhernenkov, Mikhail. Functional lipid pairs as building blocks of phase-separated membranes. United States. https://doi.org/10.1073/pnas.1919264117
Soloviov, Dmytro, Cai, Yong Q., Bolmatov, Dima, Suvorov, Alexey, Zhernenkov, Kirill, Zav’yalov, Dmitry, Bosak, Alexey, Uchiyama, Hiroshi, and Zhernenkov, Mikhail. Tue . "Functional lipid pairs as building blocks of phase-separated membranes". United States. https://doi.org/10.1073/pnas.1919264117.
@article{osti_1600087,
title = {Functional lipid pairs as building blocks of phase-separated membranes},
author = {Soloviov, Dmytro and Cai, Yong Q. and Bolmatov, Dima and Suvorov, Alexey and Zhernenkov, Kirill and Zav’yalov, Dmitry and Bosak, Alexey and Uchiyama, Hiroshi and Zhernenkov, Mikhail},
abstractNote = {Biological membranes exhibit a great deal of compositional and phase heterogeneity due to hundreds of chemically distinct components. As a result, phase separation processes in cell membranes are extremely difficult to study, especially at the molecular level. It is currently believed that the lateral membrane heterogeneity and the formation of domains, or rafts, are driven by lipid–lipid and lipid–protein interactions. Nevertheless, the underlying mechanisms regulating membrane heterogeneity remain poorly understood. In the present work, we combine inelastic X-ray scattering with molecular dynamics simulations to provide direct evidence for the existence of strongly coupled transient lipid pairs. These lipid pairs manifest themselves experimentally through optical vibrational (a.k.a. phononic) modes observed in binary (1,2-dipalmitoyl- sn -glycero-3-phosphocholine [DPPC]–cholesterol) and ternary (DPPC–1,2-dioleoyl- sn -glycero-3-phosphocholine/1-palmitoyl-2-oleoyl-glycero-3-phosphocholine [DOPC/POPC]–cholesterol) systems. The existence of a phononic gap in these vibrational modes is a direct result of the finite size of patches formed by these lipid pairs. The observation of lipid pairs provides a spatial (subnanometer) and temporal (subnanosecond) window into the lipid–lipid interactions in complex mixtures of saturated/unsaturated lipids and cholesterol. Our findings represent a step toward understanding the lateral organization and dynamics of membrane domains using a well-validated probe with a high spatial and temporal resolution.},
doi = {10.1073/pnas.1919264117},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
number = 9,
volume = 117,
place = {United States},
year = {Tue Feb 18 00:00:00 EST 2020},
month = {Tue Feb 18 00:00:00 EST 2020}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1073/pnas.1919264117

Citation Metrics:
Cited by: 16 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Protein area occupancy at the center of the red blood cell membrane
journal, February 2008

  • Dupuy, A. D.; Engelman, D. M.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 8
  • DOI: 10.1073/pnas.0712379105

GPI-anchored proteins are organized in submicron domains at the cell surface
journal, August 1998

  • Varma, Rajat; Mayor, Satyajit
  • Nature, Vol. 394, Issue 6695
  • DOI: 10.1038/29563

Biophysical properties of lipids and dynamic membranes
journal, October 2006


Crossover from picosecond collective to single particle dynamics defines the mechanism of lateral lipid diffusion
journal, November 2018

  • Bolmatov, Dima; Cai, Yong Q.; Zav’yalov, Dmitry
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1860, Issue 11
  • DOI: 10.1016/j.bbamem.2018.07.004

Principles of the Theory of Solids
book, January 1972


Phase equilibria in the phosphatidylcholine-cholesterol system
journal, November 1987

  • Hjort Ipsen, J.; Karlström, G.; Mourtisen, O. G.
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 905, Issue 1
  • DOI: 10.1016/0005-2736(87)90020-4

A Microscopic Interaction Model of Maximum Solubility of Cholesterol in Lipid Bilayers
journal, April 1999


Crystallization around solid-like nanosized docks can explain the specificity, diversity, and stability of membrane microdomains
journal, March 2014


Water Adsorption Isotherms of Lipids
journal, December 2011


Preparation of Solid-Supported Lipid Bilayers by Spin-Coating
journal, October 2002


Ultrafast Vibrational Dynamics of Membrane-Bound Peptides at the Lipid Bilayer/Water Interface
journal, September 2017

  • Tan, Junjun; Zhang, Baixiong; Luo, Yi
  • Angewandte Chemie International Edition, Vol. 56, Issue 42
  • DOI: 10.1002/anie.201706996

Cholesterol-Phospholipid Interactions: New Insights from Surface X-Ray Scattering Data
journal, March 2010


The Continuing Mystery of Lipid Rafts
journal, December 2016


Structure of gel phase saturated lecithin bilayers: temperature and chain length dependence
journal, August 1996


Plasma membranes are poised for activation of raft phase coalescence at physiological temperature
journal, July 2008

  • Lingwood, D.; Ries, J.; Schwille, P.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 29
  • DOI: 10.1073/pnas.0804374105

FLIM-FRET and FRAP reveal association of influenza virus haemagglutinin with membrane rafts
journal, January 2010

  • Engel, Stephanie; Scolari, Silvia; Thaa, Bastian
  • Biochemical Journal, Vol. 425, Issue 3
  • DOI: 10.1042/BJ20091388

Biological Membrane Organization and Cellular Signaling
journal, January 2019


An X-ray scattering beamline for studying dynamics
journal, March 2000


Membrane lipids: where they are and how they behave
journal, February 2008

  • van Meer, Gerrit; Voelker, Dennis R.; Feigenson, Gerald W.
  • Nature Reviews Molecular Cell Biology, Vol. 9, Issue 2
  • DOI: 10.1038/nrm2330

Simulation of the l o −l d Phase Boundary in DSPC/DOPC/Cholesterol Ternary Mixtures Using Pairwise Interactions
journal, February 2011

  • Dai, Jian; Alwarawrah, Mohammad; Ali, Md Rejwan
  • The Journal of Physical Chemistry B, Vol. 115, Issue 7
  • DOI: 10.1021/jp110243v

Multiple Interacting Collective Modes and Phonon Gap in Phospholipid Membranes
journal, July 2018

  • D’Angelo, Giovanna; Nibali, Valeria Conti; Wanderlingh, Ulderico
  • The Journal of Physical Chemistry Letters, Vol. 9, Issue 15
  • DOI: 10.1021/acs.jpclett.8b01658

Terasonic Excitations in 2D Gold Nanoparticle Arrays in a Water Matrix as Revealed by Atomistic Simulations
journal, August 2016

  • Bolmatov, Dima; Zhernenkov, Mikhail; Zav’yalov, Dmitry
  • The Journal of Physical Chemistry C, Vol. 120, Issue 35
  • DOI: 10.1021/acs.jpcc.6b08250

Ras trafficking, localization and compartmentalized signalling
journal, April 2012


Molecular dynamics simulation of short-wavelength collective dynamics of phospholipid membranes
journal, May 2014


Emergent Optical Phononic Modes upon Nanoscale Mesogenic Phase Transitions
journal, May 2017


Condensed Complexes of Cholesterol and Phospholipids
journal, September 1999


Dynamic clustered distribution of hemagglutinin resolved at 40 nm in living cell membranes discriminates between raft theories
journal, October 2007

  • Hess, S. T.; Gould, T. J.; Gudheti, M. V.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 44
  • DOI: 10.1073/pnas.0708066104

Line Tensions, Correlation Lengths, and Critical Exponents in Lipid Membranes Near Critical Points
journal, July 2008

  • Honerkamp-Smith, Aurelia R.; Cicuta, Pietro; Collins, Marcus D.
  • Biophysical Journal, Vol. 95, Issue 1
  • DOI: 10.1529/biophysj.107.128421

Sorting of sphingolipids in epithelial (Madin-Darby canine kidney) cells.
journal, October 1987

  • van Meer, G.; Stelzer, E. H.; Wijnaendts-van-Resandt, R. W.
  • The Journal of Cell Biology, Vol. 105, Issue 4
  • DOI: 10.1083/jcb.105.4.1623

Push–Pull Mechanism for Lipid Raft Formation
journal, March 2014

  • Krause, Martin R.; Daly, Trevor A.; Almeida, Paulo F.
  • Langmuir, Vol. 30, Issue 12
  • DOI: 10.1021/la500510s

Condensed complexes of cholesterol and phospholipids
journal, March 2003

  • McConnell, Harden M.; Radhakrishnan, Arun
  • Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1610, Issue 2
  • DOI: 10.1016/S0005-2736(03)00015-4

Revealing the mechanism of passive transport in lipid bilayers via phonon-mediated nanometre-scale density fluctuations
journal, May 2016

  • Zhernenkov, Mikhail; Bolmatov, Dima; Soloviov, Dmitry
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms11575

Phase Separation in Lipid Membranes
journal, March 2011


Revealing the Mechanism of the Viscous-to-Elastic Crossover in Liquids
journal, July 2015

  • Bolmatov, Dima; Zhernenkov, Mikhail; Zav’yalov, Dmitry
  • The Journal of Physical Chemistry Letters, Vol. 6, Issue 15
  • DOI: 10.1021/acs.jpclett.5b01338

The mystery of membrane organization: composition, regulation and roles of lipid rafts
journal, March 2017

  • Sezgin, Erdinc; Levental, Ilya; Mayor, Satyajit
  • Nature Reviews Molecular Cell Biology, Vol. 18, Issue 6
  • DOI: 10.1038/nrm.2017.16

Collective Dynamics in Fully Hydrated Phospholipid Bilayers Studied by Inelastic X-Ray Scattering
journal, January 2001


Thermodynamics of lipid interactions in complex bilayers
journal, January 2009


Perspective on the Martini model
journal, January 2013

  • Marrink, Siewert J.; Tieleman, D. Peter
  • Chemical Society Reviews, Vol. 42, Issue 16
  • DOI: 10.1039/c3cs60093a

Order and disorder in fully hydrated unoriented bilayers of gel-phase dipalmitoylphosphatidylcholine
journal, May 1994


The Molecular Structure of the Liquid-Ordered Phase of Lipid Bilayers
journal, January 2014

  • Sodt, Alexander J.; Sandar, Michael Logan; Gawrisch, Klaus
  • Journal of the American Chemical Society, Vol. 136, Issue 2
  • DOI: 10.1021/ja4105667

Ultrafast energy relaxation dynamics of amide I vibrations coupled with protein-bound water molecules
journal, March 2019


Polyunsaturated Lipids Regulate Membrane Domain Stability by Tuning Membrane Order
journal, April 2016


Push and Pull Forces in Lipid Raft Formation: The Push Can Be as Important as the Pull
journal, January 2015

  • Wang, Chang; Krause, Martin R.; Regen, Steven L.
  • Journal of the American Chemical Society, Vol. 137, Issue 2
  • DOI: 10.1021/ja5115437

Unified phonon-based approach to the thermodynamics of solid, liquid and gas states
journal, December 2015


Universal disorder-induced broadening of phonon bands: from disordered lattices to glasses
journal, July 2018


Soft Matter in Lipid–Protein Interactions
journal, May 2017


Lipid Raft Formation: Key Role of Polyunsaturated Phospholipids
journal, January 2017

  • Wang, Chang; Yu, Yuming; Regen, Steven L.
  • Angewandte Chemie International Edition, Vol. 56, Issue 6
  • DOI: 10.1002/anie.201611367

Direct observation of the nanoscale dynamics of membrane lipids in a living cell
journal, December 2008

  • Eggeling, Christian; Ringemann, Christian; Medda, Rebecca
  • Nature, Vol. 457, Issue 7233
  • DOI: 10.1038/nature07596

Critical fluctuations in domain-forming lipid mixtures
journal, October 2007

  • Veatch, S. L.; Soubias, O.; Keller, S. L.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 45
  • DOI: 10.1073/pnas.0703513104

Miscibility Phase Diagrams of Giant Vesicles Containing Sphingomyelin
journal, April 2005


Large-scale fluid/fluid phase separation of proteins and lipids in giant plasma membrane vesicles
journal, February 2007

  • Baumgart, T.; Hammond, A. T.; Sengupta, P.
  • Proceedings of the National Academy of Sciences, Vol. 104, Issue 9
  • DOI: 10.1073/pnas.0611357104

Areas of Molecules in Membranes Consisting of Mixtures
journal, September 2005


Lipid lateral diffusion and membrane heterogeneity
journal, January 2009


Thermally triggered phononic gaps in liquids at THz scale
journal, January 2016

  • Bolmatov, Dima; Zhernenkov, Mikhail; Zav’yalov, Dmitry
  • Scientific Reports, Vol. 6, Issue 1
  • DOI: 10.1038/srep19469

Functional rafts in cell membranes
journal, June 1997

  • Simons, Kai; Ikonen, Elina
  • Nature, Vol. 387, Issue 6633
  • DOI: 10.1038/42408

Proving Lipid Rafts Exist: Membrane Domains in the Prokaryote Borrelia burgdorferi Have the Same Properties as Eukaryotic Lipid Rafts
journal, May 2013


Allosteric regulation of G protein–coupled receptor activity by phospholipids
journal, November 2015

  • Dawaliby, Rosie; Trubbia, Cataldo; Delporte, Cédric
  • Nature Chemical Biology, Vol. 12, Issue 1
  • DOI: 10.1038/nchembio.1960

The Observation of Highly Ordered Domains in Membranes with Cholesterol
journal, June 2013


Selective solubilization of proteins and phospholipids from red blood cell membranes by nonionic detergents
journal, January 1973

  • Yu, John; Fischman, Donald A.; Steck, Theodore L.
  • Journal of Supramolecular Structure, Vol. 1, Issue 3
  • DOI: 10.1002/jss.400010308

Collective Chain Dynamics in Lipid Bilayers by Inelastic X-Ray Scattering
journal, June 2003


Membrane Lipid Nanodomains
journal, October 2018


Minimal Model of Plasma Membrane Heterogeneity Requires Coupling Cortical Actin to Criticality
journal, April 2011

  • Machta, Benjamin B.; Papanikolaou, Stefanos; Sethna, James P.
  • Biophysical Journal, Vol. 100, Issue 7
  • DOI: 10.1016/j.bpj.2011.02.029

Crowding-Induced Mixing Behavior of Lipid Bilayers: Examination of Mixing Energy, Phase, Packing Geometry, and Reversibility
journal, April 2016


The Condensing Effect of Cholesterol in Lipid Bilayers
journal, June 2007