Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
Abstract
The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.
- Authors:
-
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- Monash Univ. Melbourne (Australia)
- Kyoto Univ., Kyoto (Japan)
- Kindai Univ., Wakayama (Japan)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States); HudsonAlpha Institute of Biotechnology, Huntsville, AL (United States)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Kobe Univ., Kobe (Japan)
- Research Organization of Information and Systems, Mishima (Japan)
- Austrian Academy of Sciences, Vienna Biocenter (VBC), Vienna (Austria)
- Nara Institute of Science and Technology, Nara (Japan)
- Univ. of Osnabrück, Osnabrück (Germany)
- Univ. Veracruzana, Veracruz (Mexico)
- Monash Univ., Melbourne (Australia)
- Univ. of Cambridge, Cambridge (United Kingdom)
- National Lab. of Genomics for Biodiversity, Guanajuato (Mexico)
- Univ. of Oxford, Oxford (United Kingdom)
- Univ. of Tennessee, Knoxville, TN (United States)
- The New Zealand Institute for Plant & Food Research Ltd., Palmerston North (New Zealand)
- Nara Inst. of Science and Technology, Nara (Japan)
- Monash Univ., Melbourne (Australia); Univ. of Osnabrück, Osnabrück (Germany)
- Monash Univ., Melbourne (Australia); Uppsala Univ., Uppsala (Sweden)
- National Inst. of Genetics, Mishima (Japan)
- Vienna Biocenter Core Facilities (VBCF), Vienna (Austria)
- Univ. de Montpellier, Montpellier (France)
- Univ.of Zurich, Zürich (Switzerland)
- The Univ. of Tokyo, Tokyo (Japan)
- Monash Univ., Melbourne (Australia); Nagoya Univ., Nagoya (Japan); Gakushuin Univ., Tokyo (Japan)
- Okayama Univ., Okayama (Japan)
- Nagoya Univ., Nagoya (Japan)
- National Inst. for Basic Biology, Okazaki (Japan); The Univ. of Tokyo, Tokyo (Japan)
- Tohoku Univ., Sendai (Japan)
- Austrian Academy of Sciences, Vienna (Austria); Univ. of Kentucky, Lexington, KY (United States)
- Gakushuin Univ., Tokyo (Japan); Nagoya Univ., Chikusa, Nagoya (Japan)
- Tokyo Univ. of Agriculture, Tokyo (Japan)
- Uppsala Univ., Uppsala (Sweden)
- National Taiwan Univ., Taipei (Taiwan)
- Inst. de Ecología, Veracruz (Mexico)
- Cold Spring Harbor Lab., Spring Harbor, NY (United States)
- Univ. Autónoma de Madrid, Madrid (Spain)
- The Univ. of Arizona, Tucson, AZ (United States)
- National Institute of Genetics, Mishima (Japan); Kazusa DNA Research Inst., Chiba (Japan)
- RIKEN Center for Sustainable Resource Science, Yokohama (Japan); Max Planck Inst. for Plant Breeding Research, Cologne (Germany)
- Tokyo Metropolitan Univ., Tokyo (Japan)
- Univ. of Minnesota, St. Paul, MN (United States)
- Univ. of Zurich, Zürich (Switzerland)
- Kumamoto Univ., Kumamoto (Japan)
- Univ. of Zurich, Zurich (Switzerland)
- The Univ. of Tokyo, Chiba (Japan)
- Kyoto Univ., Gokasho (Japan)
- Univ. Ulm, Ulm (Germany)
- Saitama Univ., Saitama (Japan)
- National Inst. for Basic Biology, Okazaki (Japan)
- Kyoto Univ., Uji (Japan)
- RIKEN Center for Sustainable Resource Science, Yokohama (Japan)
- Publication Date:
- Research Org.:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States). National Energy Research Scientific Computing Center (NERSC); Univ. of California, Oakland, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER)
- OSTI Identifier:
- 1543518
- Alternate Identifier(s):
- OSTI ID: 1572782
- Grant/Contract Number:
- AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Cell
- Additional Journal Information:
- Journal Volume: 171; Journal Issue: 2; Journal ID: ISSN 0092-8674
- Publisher:
- Elsevier
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; Biochemistry & Molecular Biology; Cell Biology; Marchantia polymorpha; land plant evolution; auxin; sex chromosome; charophycean algae
Citation Formats
Bowman, John L., Kohchi, Takayuki, Yamato, Katsuyuki T., Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A., Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R., Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M., Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E., Eklund, D. Magnus, Florent, Stevie N., Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J., Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N., Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih -Shun, Lindquist, Erika, Lipzen, Anna M., Lu, Chia -Wei, De Luna, Efraín, Martienssen, Robert A., Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W., Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M., Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, and Schmutz, Jeremy. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. United States: N. p., 2017.
Web. doi:10.1016/j.cell.2017.09.030.
Bowman, John L., Kohchi, Takayuki, Yamato, Katsuyuki T., Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A., Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R., Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M., Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E., Eklund, D. Magnus, Florent, Stevie N., Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J., Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N., Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih -Shun, Lindquist, Erika, Lipzen, Anna M., Lu, Chia -Wei, De Luna, Efraín, Martienssen, Robert A., Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W., Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M., Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, & Schmutz, Jeremy. Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome. United States. https://doi.org/10.1016/j.cell.2017.09.030
Bowman, John L., Kohchi, Takayuki, Yamato, Katsuyuki T., Jenkins, Jerry, Shu, Shengqiang, Ishizaki, Kimitsune, Yamaoka, Shohei, Nishihama, Ryuichi, Nakamura, Yasukazu, Berger, Frédéric, Adam, Catherine, Aki, Shiori Sugamata, Althoff, Felix, Araki, Takashi, Arteaga-Vazquez, Mario A., Balasubrmanian, Sureshkumar, Barry, Kerrie, Bauer, Diane, Boehm, Christian R., Briginshaw, Liam, Caballero-Perez, Juan, Catarino, Bruno, Chen, Feng, Chiyoda, Shota, Chovatia, Mansi, Davies, Kevin M., Delmans, Mihails, Demura, Taku, Dierschke, Tom, Dolan, Liam, Dorantes-Acosta, Ana E., Eklund, D. Magnus, Florent, Stevie N., Flores-Sandoval, Eduardo, Fujiyama, Asao, Fukuzawa, Hideya, Galik, Bence, Grimanelli, Daniel, Grimwood, Jane, Grossniklaus, Ueli, Hamada, Takahiro, Haseloff, Jim, Hetherington, Alexander J., Higo, Asuka, Hirakawa, Yuki, Hundley, Hope N., Ikeda, Yoko, Inoue, Keisuke, Inoue, Shin-ichiro, Ishida, Sakiko, Jia, Qidong, Kakita, Mitsuru, Kanazawa, Takehiko, Kawai, Yosuke, Kawashima, Tomokazu, Kennedy, Megan, Kinose, Keita, Kinoshita, Toshinori, Kohara, Yuji, Koide, Eri, Komatsu, Kenji, Kopischke, Sarah, Kubo, Minoru, Kyozuka, Junko, Lagercrantz, Ulf, Lin, Shih -Shun, Lindquist, Erika, Lipzen, Anna M., Lu, Chia -Wei, De Luna, Efraín, Martienssen, Robert A., Minamino, Naoki, Mizutani, Masaharu, Mizutani, Miya, Mochizuki, Nobuyoshi, Monte, Isabel, Mosher, Rebecca, Nagasaki, Hideki, Nakagami, Hirofumi, Naramoto, Satoshi, Nishitani, Kazuhiko, Ohtani, Misato, Okamoto, Takashi, Okumura, Masaki, Phillips, Jeremy, Pollak, Bernardo, Reinders, Anke, Rövekamp, Moritz, Sano, Ryosuke, Sawa, Shinichiro, Schmid, Marc W., Shirakawa, Makoto, Solano, Roberto, Spunde, Alexander, Suetsugu, Noriyuki, Sugano, Sumio, Sugiyama, Akifumi, Sun, Rui, Suzuki, Yutaka, Takenaka, Mizuki, Takezawa, Daisuke, Tomogane, Hirokazu, Tsuzuki, Masayuki, Ueda, Takashi, Umeda, Masaaki, Ward, John M., Watanabe, Yuichiro, Yazaki, Kazufumi, Yokoyama, Ryusuke, Yoshitake, Yoshihiro, Yotsui, Izumi, Zachgo, Sabine, and Schmutz, Jeremy. Thu .
"Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome". United States. https://doi.org/10.1016/j.cell.2017.09.030. https://www.osti.gov/servlets/purl/1543518.
@article{osti_1543518,
title = {Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome},
author = {Bowman, John L. and Kohchi, Takayuki and Yamato, Katsuyuki T. and Jenkins, Jerry and Shu, Shengqiang and Ishizaki, Kimitsune and Yamaoka, Shohei and Nishihama, Ryuichi and Nakamura, Yasukazu and Berger, Frédéric and Adam, Catherine and Aki, Shiori Sugamata and Althoff, Felix and Araki, Takashi and Arteaga-Vazquez, Mario A. and Balasubrmanian, Sureshkumar and Barry, Kerrie and Bauer, Diane and Boehm, Christian R. and Briginshaw, Liam and Caballero-Perez, Juan and Catarino, Bruno and Chen, Feng and Chiyoda, Shota and Chovatia, Mansi and Davies, Kevin M. and Delmans, Mihails and Demura, Taku and Dierschke, Tom and Dolan, Liam and Dorantes-Acosta, Ana E. and Eklund, D. Magnus and Florent, Stevie N. and Flores-Sandoval, Eduardo and Fujiyama, Asao and Fukuzawa, Hideya and Galik, Bence and Grimanelli, Daniel and Grimwood, Jane and Grossniklaus, Ueli and Hamada, Takahiro and Haseloff, Jim and Hetherington, Alexander J. and Higo, Asuka and Hirakawa, Yuki and Hundley, Hope N. and Ikeda, Yoko and Inoue, Keisuke and Inoue, Shin-ichiro and Ishida, Sakiko and Jia, Qidong and Kakita, Mitsuru and Kanazawa, Takehiko and Kawai, Yosuke and Kawashima, Tomokazu and Kennedy, Megan and Kinose, Keita and Kinoshita, Toshinori and Kohara, Yuji and Koide, Eri and Komatsu, Kenji and Kopischke, Sarah and Kubo, Minoru and Kyozuka, Junko and Lagercrantz, Ulf and Lin, Shih -Shun and Lindquist, Erika and Lipzen, Anna M. and Lu, Chia -Wei and De Luna, Efraín and Martienssen, Robert A. and Minamino, Naoki and Mizutani, Masaharu and Mizutani, Miya and Mochizuki, Nobuyoshi and Monte, Isabel and Mosher, Rebecca and Nagasaki, Hideki and Nakagami, Hirofumi and Naramoto, Satoshi and Nishitani, Kazuhiko and Ohtani, Misato and Okamoto, Takashi and Okumura, Masaki and Phillips, Jeremy and Pollak, Bernardo and Reinders, Anke and Rövekamp, Moritz and Sano, Ryosuke and Sawa, Shinichiro and Schmid, Marc W. and Shirakawa, Makoto and Solano, Roberto and Spunde, Alexander and Suetsugu, Noriyuki and Sugano, Sumio and Sugiyama, Akifumi and Sun, Rui and Suzuki, Yutaka and Takenaka, Mizuki and Takezawa, Daisuke and Tomogane, Hirokazu and Tsuzuki, Masayuki and Ueda, Takashi and Umeda, Masaaki and Ward, John M. and Watanabe, Yuichiro and Yazaki, Kazufumi and Yokoyama, Ryusuke and Yoshitake, Yoshihiro and Yotsui, Izumi and Zachgo, Sabine and Schmutz, Jeremy},
abstractNote = {The evolution of land flora transformed the terrestrial environment. Land plants evolved from an ancestral charophycean alga from which they inherited developmental, biochemical, and cell biological attributes. Additional biochemical and physiological adaptations to land, and a life cycle with an alternation between multicellular haploid and diploid generations that facilitated efficient dispersal of desiccation tolerant spores, evolved in the ancestral land plant. We analyzed the genome of the liverwort Marchantia polymorpha, a member of a basal land plant lineage. Relative to charophycean algae, land plant genomes are characterized by genes encoding novel biochemical pathways, new phytohormone signaling pathways (notably auxin), expanded repertoires of signaling pathways, and increased diversity in some transcription factor families. Compared with other sequenced land plants, M. polymorpha exhibits low genetic redundancy in most regulatory pathways, with this portion of its genome resembling that predicted for the ancestral land plant. PAPERCLIP.},
doi = {10.1016/j.cell.2017.09.030},
journal = {Cell},
number = 2,
volume = 171,
place = {United States},
year = {Thu Oct 05 00:00:00 EDT 2017},
month = {Thu Oct 05 00:00:00 EDT 2017}
}
Web of Science
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A Method for Evaluating Three-Dimensional Morphological Features: A Case Study Using Marchantia polymorpha
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Aux/IAA Gene Family in Plants: Molecular Structure, Regulation, and Function
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Evolutionary History of the Glycoside Hydrolase 3 (GH3) Family Based on the Sequenced Genomes of 48 Plants and Identification of Jasmonic Acid-Related GH3 Proteins in Solanum tuberosum
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- International Journal of Molecular Sciences, Vol. 19, Issue 7
Jasmonates: News on Occurrence, Biosynthesis, Metabolism and Action of an Ancient Group of Signaling Compounds
journal, August 2018
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AHK3-Mediated Cytokinin Signaling Is Required for the Delayed Leaf Senescence Induced by SSPP
journal, April 2019
- Wang, Yanan; Zhang, Xiyu; Cui, Yanjiao
- International Journal of Molecular Sciences, Vol. 20, Issue 8
OsbZIP81, A Homologue of Arabidopsis VIP1, May Positively Regulate JA Levels by Directly Targetting the Genes in JA Signaling and Metabolism Pathway in Rice
journal, May 2019
- Liu, Defang; Shi, Shaopeng; Hao, Zhijun
- International Journal of Molecular Sciences, Vol. 20, Issue 9
Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants
journal, July 2019
- Liu, Ming-Ming; Wang, Mang-Mang; Yang, Jin
- International Journal of Molecular Sciences, Vol. 20, Issue 14
Evolutionary Analysis of JAZ Proteins in Plants: An Approach in Search of the Ancestral Sequence
journal, October 2019
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The Roles of Auxin Biosynthesis YUCCA Gene Family in Plants
journal, December 2019
- Cao, Xu; Yang, Honglei; Shang, Chunqiong
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Recent Advances in Plant Chemical Biology of Jasmonates
journal, February 2020
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Deciphering the Evolution and Development of the Cuticle by Studying Lipid Transfer Proteins in Mosses and Liverworts
journal, January 2018
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Valuable Fatty Acids in Bryophytes—Production, Biosynthesis, Analysis and Applications
journal, November 2019
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Biological roles and an evolutionary sketch of the GRF-GIF transcriptional complex in plants
journal, April 2019
- Kim, Jeong Hoe
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