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Title: Labeling of Phosphatidylinositol Lipid Products in Cells through Metabolic Engineering by Using a Clickable myo-Inositol Probe

Abstract

Phosphatidylinositol (PI) lipids control critical biological processes, so aberrant biosynthesis often leads to disease. As a result, the capability to track the production and localization of these compounds in cells is vital for elucidating their complex roles. In this paper, we report the design, synthesis, and application of clickable myo-inositol probe 1 a for bioorthogonal labeling of PI products. To validate this platform, we initially conducted PI synthase assays to show that 1 a inhibits PI production in vitro. Fluorescence microscopy experiments next showed probe-dependent imaging in T-24 human bladder cancer and Candida albicans cells. Growth studies in the latter showed that replacement of myo-inositol with probe 1 a led to an enhancement in cell growth. Lastly, fluorescence-based TLC analysis and mass spectrometry experiments support the labeling of PI lipids. This approach provides a promising means for tracking the complex biosynthesis and trafficking of these lipids in cells.

Authors:
 [1];  [1];  [1];  [1];  [1];  [1];  [1];  [1]; ORCiD logo [2];  [1];  [1]; ORCiD logo [1]
  1. Univ. of Tennessee, Knoxville, TN (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
USDOE
OSTI Identifier:
1494897
Grant/Contract Number:  
AC05-00OR22725
Resource Type:
Accepted Manuscript
Journal Name:
ChemBioChem: a European journal of chemical biology
Additional Journal Information:
Journal Volume: 20; Journal Issue: 2; Journal ID: ISSN 1439-4227
Publisher:
ChemPubSoc Europe
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; click chemistry; fluorescent probes; lipids; metabolic labeling; phospholipids

Citation Formats

Ricks, Tanei, Cassilly, Chelsi D., Carr, Adam J., Alves, Daiane S., Alam, Shahrina, Tscherch, Kathrin, Yokley, Timothy W., Workman, Cameron E., Morrell-Falvey, Jennifer L., Barrera, Francisco N., Reynolds, Todd B., and Best, Michael D. Labeling of Phosphatidylinositol Lipid Products in Cells through Metabolic Engineering by Using a Clickable myo-Inositol Probe. United States: N. p., 2018. Web. doi:10.1002/cbic.201800248.
Ricks, Tanei, Cassilly, Chelsi D., Carr, Adam J., Alves, Daiane S., Alam, Shahrina, Tscherch, Kathrin, Yokley, Timothy W., Workman, Cameron E., Morrell-Falvey, Jennifer L., Barrera, Francisco N., Reynolds, Todd B., & Best, Michael D. Labeling of Phosphatidylinositol Lipid Products in Cells through Metabolic Engineering by Using a Clickable myo-Inositol Probe. United States. https://doi.org/10.1002/cbic.201800248
Ricks, Tanei, Cassilly, Chelsi D., Carr, Adam J., Alves, Daiane S., Alam, Shahrina, Tscherch, Kathrin, Yokley, Timothy W., Workman, Cameron E., Morrell-Falvey, Jennifer L., Barrera, Francisco N., Reynolds, Todd B., and Best, Michael D. Sat . "Labeling of Phosphatidylinositol Lipid Products in Cells through Metabolic Engineering by Using a Clickable myo-Inositol Probe". United States. https://doi.org/10.1002/cbic.201800248. https://www.osti.gov/servlets/purl/1494897.
@article{osti_1494897,
title = {Labeling of Phosphatidylinositol Lipid Products in Cells through Metabolic Engineering by Using a Clickable myo-Inositol Probe},
author = {Ricks, Tanei and Cassilly, Chelsi D. and Carr, Adam J. and Alves, Daiane S. and Alam, Shahrina and Tscherch, Kathrin and Yokley, Timothy W. and Workman, Cameron E. and Morrell-Falvey, Jennifer L. and Barrera, Francisco N. and Reynolds, Todd B. and Best, Michael D.},
abstractNote = {Phosphatidylinositol (PI) lipids control critical biological processes, so aberrant biosynthesis often leads to disease. As a result, the capability to track the production and localization of these compounds in cells is vital for elucidating their complex roles. In this paper, we report the design, synthesis, and application of clickable myo-inositol probe 1 a for bioorthogonal labeling of PI products. To validate this platform, we initially conducted PI synthase assays to show that 1 a inhibits PI production in vitro. Fluorescence microscopy experiments next showed probe-dependent imaging in T-24 human bladder cancer and Candida albicans cells. Growth studies in the latter showed that replacement of myo-inositol with probe 1 a led to an enhancement in cell growth. Lastly, fluorescence-based TLC analysis and mass spectrometry experiments support the labeling of PI lipids. This approach provides a promising means for tracking the complex biosynthesis and trafficking of these lipids in cells.},
doi = {10.1002/cbic.201800248},
journal = {ChemBioChem: a European journal of chemical biology},
number = 2,
volume = 20,
place = {United States},
year = {Sat Aug 11 00:00:00 EDT 2018},
month = {Sat Aug 11 00:00:00 EDT 2018}
}

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Works referenced in this record:

The versatility and universality of calcium signalling
journal, October 2000

  • Berridge, Michael J.; Lipp, Peter; Bootman, Martin D.
  • Nature Reviews Molecular Cell Biology, Vol. 1, Issue 1
  • DOI: 10.1038/35036035

Labeling Cell Surface GPIs and GPI-Anchored Proteins through Metabolic Engineering with Artificial Inositol Derivatives
journal, June 2015


Asymmetrical Distribution of Choline Phospholipids Revealed by Click Chemistry and Freeze-Fracture Electron Microscopy
journal, August 2014

  • Iyoshi, Shohei; Cheng, Jinglei; Tatematsu, Tsuyako
  • ACS Chemical Biology, Vol. 9, Issue 10
  • DOI: 10.1021/cb500558n

Selective oxidative debenzylation of mono- and oligosaccharides in the presence of azides
journal, January 2011

  • Niemietz, Mathäus; Perkams, Lukas; Hoffman, Joanna
  • Chemical Communications, Vol. 47, Issue 37
  • DOI: 10.1039/c1cc13884g

Khafrefungin, a Novel Inhibitor of Sphingolipid Synthesis
journal, December 1997

  • Mandala, Suzanne M.; Thornton, Rosemary A.; Rosenbach, Mark
  • Journal of Biological Chemistry, Vol. 272, Issue 51
  • DOI: 10.1074/jbc.272.51.32709

Sphingolipid Synthesis as a Target for Antifungal Drugs: COMPLEMENTATION OF THE INOSITOL PHOSPHORYLCERAMIDE SYNTHASE DEFECT IN A MUTANT STRAIN OF
journal, April 1997

  • Nagiec, M. Marek; Nagiec, Elzbieta E.; Baltisberger, Julie A.
  • Journal of Biological Chemistry, Vol. 272, Issue 15
  • DOI: 10.1074/jbc.272.15.9809

Metabolic labeling and direct imaging of choline phospholipids in vivo
journal, August 2009

  • Jao, C. Y.; Roth, M.; Welti, R.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 36
  • DOI: 10.1073/pnas.0907864106

Phosphatidylserine synthase and phosphatidylserine decarboxylase are essential for cell wall integrity and virulence in Candida albicans
journal, March 2010


A Chemoenzymatic Strategy for Imaging Cellular Phosphatidic Acid Synthesis
journal, October 2016


Synthesis of the Aminocyclitol Units of (−)-Hygromycin A and Methoxyhygromycin from myo -Inositol
journal, June 2012

  • Gurale, Bharat P.; Shashidhar, Mysore S.; Gonnade, Rajesh G.
  • The Journal of Organic Chemistry, Vol. 77, Issue 13
  • DOI: 10.1021/jo300444b

Bioorthogonale Chemie - oder: in einem Meer aus Funktionalität nach Selektivität fischen
journal, September 2009

  • Sletten, Ellen M.; Bertozzi, Carolyn R.
  • Angewandte Chemie, Vol. 121, Issue 38
  • DOI: 10.1002/ange.200900942

Role of phosphatidylserine synthase in shaping the phospholipidome of Candida albicans
journal, February 2017

  • Cassilly, Chelsi D.; Farmer, Abigail T.; Montedonico, Anthony E.
  • FEMS Yeast Research, Vol. 17, Issue 2
  • DOI: 10.1093/femsyr/fox007

Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling
journal, December 2010

  • Villa-García, Manuel J.; Choi, Myung Sun; Hinz, Flora I.
  • Molecular Genetics and Genomics, Vol. 285, Issue 2
  • DOI: 10.1007/s00438-010-0592-x

Clickable Substrate Mimics Enable Imaging of Phospholipase D Activity
journal, September 2017


The response to inositol: Regulation of glycerolipid metabolism and stress response signaling in yeast
journal, May 2014


Phosphoinositide phosphatases and disease
journal, November 2008


Click Chemistry in Complex Mixtures: Bioorthogonal Bioconjugation
journal, September 2014


Inositol phosphates and cell signalling
journal, September 1989

  • Berridge, Michael J.; Irvine, Robin F.
  • Nature, Vol. 341, Issue 6239
  • DOI: 10.1038/341197a0

Cell Surface Engineering by a Modified Staudinger Reaction
journal, March 2000


Targeted metabolic labeling of yeast N-glycans with unnatural sugars
journal, February 2010

  • Breidenbach, M. A.; Gallagher, J. E. G.; King, D. S.
  • Proceedings of the National Academy of Sciences, Vol. 107, Issue 9
  • DOI: 10.1073/pnas.0911247107

Genome-wide Analysis Reveals Inositol, Not Choline, as the Major Effector of Ino2p-Ino4p and Unfolded Protein Response Target Gene Expression in Yeast
journal, December 2004

  • Jesch, S. A.; Zhao, X.; Wells, M. T.
  • Journal of Biological Chemistry, Vol. 280, Issue 10
  • DOI: 10.1074/jbc.M411770200

Determination of content and fatty acid composition of unlabeled phosphoinositide species by thin-layer chromatography and gas chromatography
journal, July 2008

  • König, Sabine; Hoffmann, Mareike; Mosblech, Alina
  • Analytical Biochemistry, Vol. 378, Issue 2
  • DOI: 10.1016/j.ab.2008.03.052

D-Chiro-Inositol – Its Functional Role in Insulin Action and its Deficit in Insulin Resistance
journal, January 2002

  • Larner, Joseph
  • International Journal of Experimental Diabetes Research, Vol. 3, Issue 1
  • DOI: 10.1080/15604280212528

Yeast sphingolipids: Recent developments in understanding biosynthesis, regulation, and function
journal, March 2007

  • Cowart, L. Ashley; Obeid, Lina M.
  • Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids, Vol. 1771, Issue 3
  • DOI: 10.1016/j.bbalip.2006.08.005

Microdetermination of phosphoinositides in a single extract
journal, January 1985


Protection Against Cancer by Dietary IP 6 and Inositol
journal, July 2006


Labeling Cell Surface GPIs and GPI-Anchored Proteins through Metabolic Engineering with Artificial Inositol Derivatives
journal, June 2015

  • Lu, Lili; Gao, Jian; Guo, Zhongwu
  • Angewandte Chemie International Edition, Vol. 54, Issue 33
  • DOI: 10.1002/anie.201503814

Cu-free click cycloaddition reactions in chemical biology
journal, January 2010

  • Jewett, John C.; Bertozzi, Carolyn R.
  • Chemical Society Reviews, Vol. 39, Issue 4
  • DOI: 10.1039/b901970g

β-2-Glycoprotein 1-dependent Macrophage Uptake of Apoptotic Cells: BINDING TO LIPOPROTEIN RECEPTOR-RELATED PROTEIN RECEPTOR FAMILY MEMBERS
journal, December 2007

  • Maiti, Sourindra N.; Balasubramanian, Krishnakumar; Ramoth, Johanna A.
  • Journal of Biological Chemistry, Vol. 283, Issue 7
  • DOI: 10.1074/jbc.M704990200

Biosynthetic Labeling and Two-Color Imaging of Phospholipids in Cells
journal, January 2015


A Chemoenzymatic Strategy for Imaging Cellular Phosphatidic Acid Synthesis
journal, October 2016

  • Bumpus, Timothy W.; Baskin, Jeremy M.
  • Angewandte Chemie International Edition, Vol. 55, Issue 42
  • DOI: 10.1002/anie.201607443

GENETICS: Yeast as a Model Organism
journal, August 1997


Yeast sphingolipids
journal, January 1999

  • Dickson, Robert C.; Lester, Robert L.
  • Biochimica et Biophysica Acta (BBA) - General Subjects, Vol. 1426, Issue 2
  • DOI: 10.1016/S0304-4165(98)00135-4

Desymmetrization of 4,6-diprotected myo-inositol
journal, January 2013

  • Lauber, Markus B.; Daniliuc, Constantin-Gabriel; Paradies, Jan
  • Chemical Communications, Vol. 49, Issue 67
  • DOI: 10.1039/c3cc43663b

Bioorthogonal Chemistry: Fishing for Selectivity in a Sea of Functionality
journal, September 2009

  • Sletten, Ellen M.; Bertozzi, Carolyn R.
  • Angewandte Chemie International Edition, Vol. 48, Issue 38, p. 6974-6998
  • DOI: 10.1002/anie.200900942

Release of Ca2+ from a nonmitochondrial intracellular store in pancreatic acinar cells by inositol-1,4,5-trisphosphate
journal, November 1983

  • Streb, H.; Irvine, R. F.; Berridge, M. J.
  • Nature, Vol. 306, Issue 5938
  • DOI: 10.1038/306067a0

Synthesis of mono- and unsymmetrical bis-orthoesters of scyllo-inositol
journal, November 1985

  • Lee, Hyo Won; Kishi, Yoshito
  • The Journal of Organic Chemistry, Vol. 50, Issue 22
  • DOI: 10.1021/jo00222a046

Phosphoinositides in cell regulation and membrane dynamics
journal, October 2006


Inositol transport proteins
journal, March 2015


Translocation of molecules into cells by pH-dependent insertion of a transmembrane helix
journal, April 2006

  • Reshetnyak, Y. K.; Andreev, O. A.; Lehnert, U.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 17
  • DOI: 10.1073/pnas.0601463103

Concise Synthesis of Ether Analogues of Lysobisphosphatidic Acid
journal, September 2005

  • Jiang, Guowei; Xu, Yong; Falguières, Thomas
  • Organic Letters, Vol. 7, Issue 18
  • DOI: 10.1021/ol051194w

Preparation of azide biosynthetic surrogates of myo-inositol
journal, May 2015


Selective oxidative debenzylation of mono- and oligosaccharides in the presence of azides
text, January 2011


Works referencing / citing this record:

Click Chemistry as a Tool for Cell Engineering and Drug Delivery
journal, January 2019