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Title: Large Uptake of Atmospheric OCS Observed at a Moist Old Growth Forest: Controls and Implications for Carbon Cycle Applications

Abstract

Diurnal and vertical patterns of carbonyl sulfide (OCS) and CO2 mixing ratios above and within a 60–m–tall old–growth temperate forest are presented. Canopy air from four different heights was sampled in situ using a continuous integrated cavity output spectroscopy analyzer during August–September 2014. Measurements revealed large vertical gradients in OCS, from which we inferred ecosystem fluxes. The diurnal cycle of OCS mixing ratios at all heights exhibited a typical pattern characterized by nighttime drawdown, an early morning minimum, and a maximum of OCS around midday. Daytime increase in the upper canopy is attributed to entrainment of planetary boundary layer air into the canopy. The ecosystem was found to be a large daytime sink of OCS (mean maximum daytime flux ~ –75 pmol · m–2 · s–1). Mean leaf relative uptake (concentration normalized uptake of OCS flux to CO2 uptake) was found to be 6.9. We discuss this high leaf relative uptake in the context of the presence and distribution of epiphytes at the site. While epiphytic uptake of OCS has been studied before, we show for the first time that this may contribute significantly to ecosystem fluxes under humid or moist conditions. We test this theory using a chamber experimentmore » measuring epiphytic fluxes for two species of lichen and one moss species (in situ and in a laboratory). Lastly, we suggest that the role of epiphytes should be explicitly considered when using OCS as a tracer of ecosystem–scale photosynthesis in forest ecosystems with abundant epiphytic cover and biomass.« less

Authors:
ORCiD logo [1]; ORCiD logo [2];  [3]; ORCiD logo [4];  [5];  [6];  [6]; ORCiD logo [1]; ORCiD logo [1]
  1. Oregon State Univ., Corvallis, OR (United States)
  2. Univ. of Illinois at Chicago, Chicago IL (United States)
  3. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
  4. Carnegie Institution for Science Stanford, CA (United States)
  5. Michigan State Univ., East Lansing, MI (United States)
  6. ABB – Los Gatos Research Orchard, CA (United States)
Publication Date:
Research Org.:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Sponsoring Org.:
USDOE National Nuclear Security Administration (NNSA)
OSTI Identifier:
1489460
Alternate Identifier(s):
OSTI ID: 1480881
Report Number(s):
LLNL-JRNL-759507
Journal ID: ISSN 2169-8953; 947551
Grant/Contract Number:  
AC52-07NA27344; SC0006449
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Geophysical Research. Biogeosciences
Additional Journal Information:
Journal Volume: 123; Journal Issue: 11; Journal ID: ISSN 2169-8953
Publisher:
American Geophysical Union
Country of Publication:
United States
Language:
English
Subject:
54 ENVIRONMENTAL SCIENCES; carbonyl sulfide; old growth forests; GPP; canopy coupling; epiphytes

Citation Formats

Rastogi, Bharat, Berkelhammer, Max, Wharton, Sonia, Whelan, Mary E., Itter, Malcolm S., Leen, J. Brian, Gupta, Manish X., Noone, David, and Still, Christopher J. Large Uptake of Atmospheric OCS Observed at a Moist Old Growth Forest: Controls and Implications for Carbon Cycle Applications. United States: N. p., 2018. Web. doi:10.1029/2018JG004430.
Rastogi, Bharat, Berkelhammer, Max, Wharton, Sonia, Whelan, Mary E., Itter, Malcolm S., Leen, J. Brian, Gupta, Manish X., Noone, David, & Still, Christopher J. Large Uptake of Atmospheric OCS Observed at a Moist Old Growth Forest: Controls and Implications for Carbon Cycle Applications. United States. https://doi.org/10.1029/2018JG004430
Rastogi, Bharat, Berkelhammer, Max, Wharton, Sonia, Whelan, Mary E., Itter, Malcolm S., Leen, J. Brian, Gupta, Manish X., Noone, David, and Still, Christopher J. Sun . "Large Uptake of Atmospheric OCS Observed at a Moist Old Growth Forest: Controls and Implications for Carbon Cycle Applications". United States. https://doi.org/10.1029/2018JG004430. https://www.osti.gov/servlets/purl/1489460.
@article{osti_1489460,
title = {Large Uptake of Atmospheric OCS Observed at a Moist Old Growth Forest: Controls and Implications for Carbon Cycle Applications},
author = {Rastogi, Bharat and Berkelhammer, Max and Wharton, Sonia and Whelan, Mary E. and Itter, Malcolm S. and Leen, J. Brian and Gupta, Manish X. and Noone, David and Still, Christopher J.},
abstractNote = {Diurnal and vertical patterns of carbonyl sulfide (OCS) and CO2 mixing ratios above and within a 60–m–tall old–growth temperate forest are presented. Canopy air from four different heights was sampled in situ using a continuous integrated cavity output spectroscopy analyzer during August–September 2014. Measurements revealed large vertical gradients in OCS, from which we inferred ecosystem fluxes. The diurnal cycle of OCS mixing ratios at all heights exhibited a typical pattern characterized by nighttime drawdown, an early morning minimum, and a maximum of OCS around midday. Daytime increase in the upper canopy is attributed to entrainment of planetary boundary layer air into the canopy. The ecosystem was found to be a large daytime sink of OCS (mean maximum daytime flux ~ –75 pmol · m–2 · s–1). Mean leaf relative uptake (concentration normalized uptake of OCS flux to CO2 uptake) was found to be 6.9. We discuss this high leaf relative uptake in the context of the presence and distribution of epiphytes at the site. While epiphytic uptake of OCS has been studied before, we show for the first time that this may contribute significantly to ecosystem fluxes under humid or moist conditions. We test this theory using a chamber experiment measuring epiphytic fluxes for two species of lichen and one moss species (in situ and in a laboratory). Lastly, we suggest that the role of epiphytes should be explicitly considered when using OCS as a tracer of ecosystem–scale photosynthesis in forest ecosystems with abundant epiphytic cover and biomass.},
doi = {10.1029/2018JG004430},
journal = {Journal of Geophysical Research. Biogeosciences},
number = 11,
volume = 123,
place = {United States},
year = {Sun Sep 23 00:00:00 EDT 2018},
month = {Sun Sep 23 00:00:00 EDT 2018}
}

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Cited by: 14 works
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Figures / Tables:

Fig. 1 Fig. 1: LAI profile from Parker [1997] (a), along with mean diurnal cycles of air temperature (b), relative humidity (c), wind speed (d), and carbon fluxes (e). Measurements were made at 70m (above canopy) and 2m (near surface). Carbon fluxes were only measured at 70m. Vertical bars represent standard errors.more » Dotted black vertical lines indicate time of sunrise and sunset. All times are Pacific Standard time (GMT – 7).« less

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Works referenced in this record:

Degradation and emission of carbonyl sulfide, an atmospheric trace gas, by fungi isolated from forest soil
journal, August 2016

  • Masaki, Yoshihito; Ozawa, Rie; Kageyama, Kei
  • FEMS Microbiology Letters, Vol. 363, Issue 18
  • DOI: 10.1093/femsle/fnw197

Relationships between carbonyl sulfide (COS) and CO2 during leaf gas exchange
journal, March 2010


Exchange of reduced sulfur gases between lichens and the atmosphere
journal, February 1994

  • Gries, C.; Nash, T. H.; Kesselmeier, J.
  • Biogeochemistry, Vol. 26, Issue 1
  • DOI: 10.1007/BF02180402

An Evaluation of Two Models for Estimation of the Roughness Height for Heat Transfer between the Land Surface and the Atmosphere
journal, November 2001


A model study of kBH−1 for vegetated surfaces using ‘localized near-field’ Lagrangian theory
journal, September 1999


A top-down approach of surface carbonyl sulfide exchange by a Mediterranean oak forest ecosystem in southern France
journal, January 2016

  • Belviso, Sauveur; Reiter, Ilja Marco; Loubet, Benjamin
  • Atmospheric Chemistry and Physics, Vol. 16, Issue 23
  • DOI: 10.5194/acp-16-14909-2016

Discrimination against C 18 O 16 O during photosynthesis and the oxygen isotope ratio of respired CO 2 in boreal forest ecosystems
journal, March 1997

  • Flanagan, Lawrence B.; Brooks, J. Renee; Varney, Gregory T.
  • Global Biogeochemical Cycles, Vol. 11, Issue 1
  • DOI: 10.1029/96GB03941

Enzymatic Pathways for the Consumption of Carbonyl Sulphide (COS) by Higher Plants*
journal, June 1992


The Missing Link in COS Metabolism: A Model Study on the Reactivation of Carbonic Anhydrase from its Hydrosulfide Analogue
journal, March 2007

  • Notni, Johannes; Schenk, Stephan; Protoschill-Krebs, Gabi
  • ChemBioChem, Vol. 8, Issue 5
  • DOI: 10.1002/cbic.200600436

A kinetic analysis of leaf uptake of COS and its relation to transpiration, photosynthesis and carbon isotope fractionation
journal, January 2010

  • Seibt, U.; Kesselmeier, J.; Sandoval-Soto, L.
  • Biogeosciences, Vol. 7, Issue 1
  • DOI: 10.5194/bg-7-333-2010

Atmospheric carbonyl sulfide sources from anthropogenic activity: Implications for carbon cycle constraints: Atmospheric OCS sources
journal, April 2015

  • Campbell, J. E.; Whelan, M. E.; Seibt, U.
  • Geophysical Research Letters, Vol. 42, Issue 8
  • DOI: 10.1002/2015GL063445

A modified micrometeorological gradient method for estimating O 3 dry depositions over a forest canopy
journal, January 2015


Uptake of COS by growing vegetation: A major tropospheric sink
journal, January 1988

  • Goldan, Paul D.; Fall, Ray; Kuster, William C.
  • Journal of Geophysical Research, Vol. 93, Issue D11
  • DOI: 10.1029/JD093iD11p14186

Climate indices strongly influence old-growth forest carbon exchange
journal, April 2016


Environmental variables controlling the uptake of carbonyl sulfide by lichens
journal, November 2000

  • Kuhn, U.; Kesselmeier, J.
  • Journal of Geophysical Research: Atmospheres, Vol. 105, Issue D22
  • DOI: 10.1029/2000JD900436

Comparing CO2 Storage and Advection Conditions at Night at Different Carboeuroflux Sites
journal, July 2005


Midday dew - an overlooked factor enhancing photosynthetic activity of corticolous epiphytes in a wet tropical rain forest
journal, January 2012


Long term carbon dioxide exchange above a mixed forest in the Belgian Ardennes
journal, July 2001


Components and Controls of Water Flux in an Old-growth Douglas-fir?Western Hemlock Ecosystem
journal, May 2004


Reviews and syntheses: Carbonyl sulfide as a multi-scale tracer for carbon and water cycles
journal, January 2018

  • Whelan, Mary E.; Lennartz, Sinikka T.; Gimeno, Teresa E.
  • Biogeosciences, Vol. 15, Issue 12
  • DOI: 10.5194/bg-15-3625-2018

Dynamics of canopy stomatal conductance, transpiration, and evaporation in a temperate deciduous forest, validated by carbonyl sulfide uptake
journal, January 2017

  • Wehr, Richard; Commane, Róisín; Munger, J. William
  • Biogeosciences, Vol. 14, Issue 2
  • DOI: 10.5194/bg-14-389-2017

Ecosystem photosynthesis inferred from measurements of carbonyl sulphide flux
journal, February 2013

  • Asaf, David; Rotenberg, Eyal; Tatarinov, Fyodor
  • Nature Geoscience, Vol. 6, Issue 3
  • DOI: 10.1038/ngeo1730

Exchange of carbonyl sulfide (OCS) between soils and atmosphere under various CO 2 concentrations : Carbonyl Sulfide and Soils
journal, June 2017

  • Bunk, Rüdiger; Behrendt, Thomas; Yi, Zhigang
  • Journal of Geophysical Research: Biogeosciences, Vol. 122, Issue 6
  • DOI: 10.1002/2016JG003678

δ 18 O of water vapour, evapotranspiration and the sites of leaf water evaporation in a soybean canopy
journal, September 2008


Carbonyl sulfide exchange in soils for better estimates of ecosystem carbon uptake
journal, January 2016

  • Whelan, Mary E.; Hilton, Timothy W.; Berry, Joseph A.
  • Atmospheric Chemistry and Physics, Vol. 16, Issue 6
  • DOI: 10.5194/acp-16-3711-2016

Comparing net ecosystem exchange of carbon dioxide between an old-growth and mature forest in the upper Midwest, USA
journal, January 2005


Seasonal fluxes of carbonyl sulfide in a midlatitude forest
journal, November 2015

  • Commane, Róisín; Meredith, Laura K.; Baker, Ian T.
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 46
  • DOI: 10.1073/pnas.1504131112

Directional wind shear within an old-growth temperate rainforest: observations and model results
journal, September 2004


Litter dominates surface fluxes of carbonyl sulfide in a Californian oak woodland: SURFACE COS FLUXES IN AN OAK WOODLAND
journal, February 2016

  • Sun, Wu; Maseyk, Kadmiel; Lett, Céline
  • Journal of Geophysical Research: Biogeosciences, Vol. 121, Issue 2
  • DOI: 10.1002/2015JG003149

Constraining surface carbon fluxes using in situ measurements of carbonyl sulfide and carbon dioxide
journal, February 2014

  • Berkelhammer, M.; Asaf, D.; Still, C.
  • Global Biogeochemical Cycles, Vol. 28, Issue 2
  • DOI: 10.1002/2013GB004644

Carbon storage and fluxes in ponderosa pine forests at different developmental stages
journal, October 2001


The potential of carbonyl sulfide as a proxy for gross primary production at flux tower sites
journal, January 2011

  • Blonquist, J. M.; Montzka, S. A.; Munger, J. W.
  • Journal of Geophysical Research, Vol. 116, Issue G4
  • DOI: 10.1029/2011JG001723

Carbonic anhydrase(s) associated with lichens: in vivo activities, possible locations and putative roles
journal, April 1996


Carbon Dioxide Exchange between an Undisturbed Old-Growth Temperate Forest and the Atmosphere
journal, January 1994

  • Hollinger, D. Y.; Kelliher, F. M.; Byers, J. N.
  • Ecology, Vol. 75, Issue 1
  • DOI: 10.2307/1939390

On the global distribution, seasonality, and budget of atmospheric carbonyl sulfide (COS) and some similarities to CO 2
journal, January 2007

  • Montzka, S. A.; Calvert, P.; Hall, B. D.
  • Journal of Geophysical Research, Vol. 112, Issue D9
  • DOI: 10.1029/2006JD007665

Flux partitioning in an old-growth forest: seasonal and interannual dynamics
journal, April 2008


Sources and sinks of carbonyl sulfide in an agricultural field in the Southern Great Plains
journal, June 2014

  • Maseyk, K.; Berry, J. A.; Billesbach, D.
  • Proceedings of the National Academy of Sciences, Vol. 111, Issue 25
  • DOI: 10.1073/pnas.1319132111

Global budget of atmospheric carbonyl sulfide: Temporal and spatial variations of the dominant sources and sinks
journal, January 2002


Consumption of carbonyl sulphide (COS) by higher plant carbonic anhydrase (CA)
journal, September 1996


A four-layer model for the heat budget of homogeneous land surfaces
journal, January 1988

  • Choudhury, B. J.; Monteith, J. L.
  • Quarterly Journal of the Royal Meteorological Society, Vol. 114, Issue 480
  • DOI: 10.1002/qj.49711448006

An investigation of hydraulic limitation and compensation in large, old Douglas-fir trees
journal, August 2002


Measuring Biosphere-Atmosphere Exchanges of Biologically Related Gases with Micrometeorological Methods
journal, October 1988

  • Baldocchi, Dennis D.; Hincks, Bruce B.; Meyers, Tilden P.
  • Ecology, Vol. 69, Issue 5
  • DOI: 10.2307/1941631

Controlling variables for the uptake of atmospheric carbonyl sulfide by soil
journal, May 1999

  • Kesselmeier, J.; Teusch, N.; Kuhn, U.
  • Journal of Geophysical Research: Atmospheres, Vol. 104, Issue D9
  • DOI: 10.1029/1999JD900090

Hydration‐dependent photosynthetic production of lichens: what do laboratory studies tell us about field performance?
journal, October 2001

  • Lange, Otto L.; Green, T. G. Allan; Heber, Ulrich
  • Journal of Experimental Botany, Vol. 52, Issue 363
  • DOI: 10.1093/jexbot/52.363.2033

Old-growth forests as global carbon sinks
journal, September 2008

  • Luyssaert, Sebastiaan; Schulze, E. -Detlef; Börner, Annett
  • Nature, Vol. 455, Issue 7210
  • DOI: 10.1038/nature07276

Field measurements on the exchange of carbonyl sulfide between lichens and the atmosphere
journal, January 2000


Ecological Setting of the Wind River Old-growth Forest
journal, May 2004


On the separation of net ecosystem exchange into assimilation and ecosystem respiration: review and improved algorithm
journal, September 2005


Canopy uptake dominates nighttime carbonyl sulfide fluxes in a boreal forest
journal, January 2017

  • Kooijmans, Linda M. J.; Maseyk, Kadmiel; Seibt, Ulli
  • Atmospheric Chemistry and Physics, Vol. 17, Issue 18
  • DOI: 10.5194/acp-17-11453-2017

Growing-season microclimate variability within an old-growth Douglas-fir forest
journal, January 1997


Flux-Profile Relationships in the Atmospheric Surface Layer
journal, March 1971


Carbonyl sulfide and carbon dioxide as new substrates, and carbon disulfide as a new inhibitor, of nitrogenase
journal, April 1995

  • Seefeldt, Lance C.; Rasche, Madeline E.; Ensign, Scott A.
  • Biochemistry, Vol. 34, Issue 16
  • DOI: 10.1021/bi00016a009

Photosynthetic Control of Atmospheric Carbonyl Sulfide During the Growing Season
journal, November 2008


Biophysical controls of carbon flows in three successional Douglas-fir stands based on eddy-covariance measurements
journal, February 2002


Old-growth CO2 flux measurements reveal high sensitivity to climate anomalies across seasonal, annual and decadal time scales
journal, August 2012


Factors controlling CO 2 exchange on timescales from hourly to decadal at Harvard Forest
journal, January 2007

  • Urbanski, S.; Barford, C.; Wofsy, S.
  • Journal of Geophysical Research, Vol. 112, Issue G2
  • DOI: 10.1029/2006JG000293

Impacts of tree height on leaf hydraulic architecture and stomatal control in Douglas-fir
journal, May 2007


Plant Uptake of Atmospheric Carbonyl Sulfide in Coast Redwood Forests: Carbonyl Sulfide Sink in Coast Redwoods
journal, December 2017

  • Campbell, J. E.; Whelan, M. E.; Berry, J. A.
  • Journal of Geophysical Research: Biogeosciences, Vol. 122, Issue 12
  • DOI: 10.1002/2016JG003703

A coupled model of the global cycles of carbonyl sulfide and CO 2 : A possible new window on the carbon cycle : CARBONYL SULFIDE AS A GLOBAL CARBON CYCLE TRACER
journal, June 2013

  • Berry, Joe; Wolf, Adam; Campbell, J. Elliott
  • Journal of Geophysical Research: Biogeosciences, Vol. 118, Issue 2
  • DOI: 10.1002/jgrg.20068

Temporal variation in ?13C of ecosystem respiration in the Pacific Northwest: links to moisture stress
journal, June 2003


Canopy Soils of Sitka Spruce and Bigleaf Maple in the Queets River Watershed, Washington
journal, January 2014

  • Haristoy, Camila Tejo; Zabowski, Darlene; Nadkarni, Nalini
  • Soil Science Society of America Journal, Vol. 78, Issue S1
  • DOI: 10.2136/sssaj2013.07.0300nafsc

Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light
journal, May 2017

  • Gimeno, Teresa E.; Ogée, Jérôme; Royles, Jessica
  • New Phytologist, Vol. 215, Issue 3
  • DOI: 10.1111/nph.14584

Carbonyl sulfide: an alternate substrate for but not an activator of ribulose-1,5-bisphosphate carboxylase
journal, February 1989


A kinetic analysis of leaf uptake of COS and its relation to transpiration, photosynthesis and carbon isotope fractionation
journal, January 2009

  • Seibt, U.; Kesselmeier, J.; Sandoval-Soto, L.
  • Biogeosciences Discussions, Vol. 6, Issue 5
  • DOI: 10.5194/bgd-6-9279-2009

Comparing CO2 storage and advection conditions at night at different carboeuroflux sites
text, January 2005


Works referencing / citing this record:

Trends and controls on water-use efficiency of an old-growth coniferous forest in the Pacific Northwest
journal, July 2019

  • Jiang, Yueyang; Still, Christopher J.; Rastogi, Bharat
  • Environmental Research Letters, Vol. 14, Issue 7
  • DOI: 10.1088/1748-9326/ab2612

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