DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Toward engineering E. coli with an autoregulatory system for lignin valorization

Abstract

Efficient lignin valorization could add more than 10-fold the value gained from burning it for energy and is critical for economic viability of future biorefineries. However, lignin-derived aromatics from biomass pretreatment are known to be potent fermentation inhibitors in microbial production of fuels and other value-added chemicals. In addition, isopropyl-β-d-1-thiogalactopyranoside and other inducers are routinely added into fermentation broth to induce the expression of pathway enzymes, which further adds to the overall process cost. An autoregulatory system that can diminish the aromatics’ toxicity as well as be substrate-inducible can be the key for successful integration of lignin valorization into future lignocellulosic biorefineries. Toward that goal, in this study an autoregulatory system is demonstrated that alleviates the toxicity issue and eliminates the cost of an external inducer. Specifically, this system is composed of a catechol biosynthesis pathway coexpressed with an active aromatic transporter CouP under induction by a vanillin self-inducible promoter, ADH7, to effectively convert the lignin-derived aromatics into value-added chemicals using Escherichia coli as a host. The constructed autoregulatory system can efficiently transport vanillin across the cell membrane and convert it to catechol. Compared with the system without CouP expression, the expression of catechol biosynthesis pathway with transporter CouP significantlymore » improved the catechol yields about 30% and 40% under promoter pTrc and ADH7, respectively. Furthermore, this study demonstrated an aromatic-induced autoregulatory system that enabled conversion of lignin-derived aromatics into catechol without the addition of any costly, external inducers, providing a promising and economically viable route for lignin valorization.« less

Authors:
 [1];  [1];  [2]
  1. Biomass Science &, Conversion Technologies Department, Sandia National Laboratories, Livermore, CA 94550,
  2. Biomass Science &, Conversion Technologies Department, Sandia National Laboratories, Livermore, CA 94550,, Joint BioEnergy Institute, Emeryville, CA 94608,, Department of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, MN 55108
Publication Date:
Research Org.:
Sandia National Lab. (SNL-CA), Livermore, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1423513
Alternate Identifier(s):
OSTI ID: 1473955
Report Number(s):
SAND-2018-9920J
Journal ID: ISSN 0027-8424
Grant/Contract Number:  
16-0758; AC02-05CH11231; AC04-94AL85000
Resource Type:
Published Article
Journal Name:
Proceedings of the National Academy of Sciences of the United States of America
Additional Journal Information:
Journal Name: Proceedings of the National Academy of Sciences of the United States of America Journal Volume: 115 Journal Issue: 12; Journal ID: ISSN 0027-8424
Publisher:
Proceedings of the National Academy of Sciences
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; lignin valorization; vanillin-inducible promoter; aromatics transporter; autoregulatory; catechol

Citation Formats

Wu, Weihua, Liu, Fang, and Singh, Seema. Toward engineering E. coli with an autoregulatory system for lignin valorization. United States: N. p., 2018. Web. doi:10.1073/pnas.1720129115.
Wu, Weihua, Liu, Fang, & Singh, Seema. Toward engineering E. coli with an autoregulatory system for lignin valorization. United States. https://doi.org/10.1073/pnas.1720129115
Wu, Weihua, Liu, Fang, and Singh, Seema. Fri . "Toward engineering E. coli with an autoregulatory system for lignin valorization". United States. https://doi.org/10.1073/pnas.1720129115.
@article{osti_1423513,
title = {Toward engineering E. coli with an autoregulatory system for lignin valorization},
author = {Wu, Weihua and Liu, Fang and Singh, Seema},
abstractNote = {Efficient lignin valorization could add more than 10-fold the value gained from burning it for energy and is critical for economic viability of future biorefineries. However, lignin-derived aromatics from biomass pretreatment are known to be potent fermentation inhibitors in microbial production of fuels and other value-added chemicals. In addition, isopropyl-β-d-1-thiogalactopyranoside and other inducers are routinely added into fermentation broth to induce the expression of pathway enzymes, which further adds to the overall process cost. An autoregulatory system that can diminish the aromatics’ toxicity as well as be substrate-inducible can be the key for successful integration of lignin valorization into future lignocellulosic biorefineries. Toward that goal, in this study an autoregulatory system is demonstrated that alleviates the toxicity issue and eliminates the cost of an external inducer. Specifically, this system is composed of a catechol biosynthesis pathway coexpressed with an active aromatic transporter CouP under induction by a vanillin self-inducible promoter, ADH7, to effectively convert the lignin-derived aromatics into value-added chemicals using Escherichia coli as a host. The constructed autoregulatory system can efficiently transport vanillin across the cell membrane and convert it to catechol. Compared with the system without CouP expression, the expression of catechol biosynthesis pathway with transporter CouP significantly improved the catechol yields about 30% and 40% under promoter pTrc and ADH7, respectively. Furthermore, this study demonstrated an aromatic-induced autoregulatory system that enabled conversion of lignin-derived aromatics into catechol without the addition of any costly, external inducers, providing a promising and economically viable route for lignin valorization.},
doi = {10.1073/pnas.1720129115},
journal = {Proceedings of the National Academy of Sciences of the United States of America},
number = 12,
volume = 115,
place = {United States},
year = {Fri Mar 02 00:00:00 EST 2018},
month = {Fri Mar 02 00:00:00 EST 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1073/pnas.1720129115

Citation Metrics:
Cited by: 60 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Lignin Valorization: Improving Lignin Processing in the Biorefinery
journal, May 2014

  • Ragauskas, A. J.; Beckham, G. T.; Biddy, M. J.
  • Science, Vol. 344, Issue 6185, p. 1246843-1246843
  • DOI: 10.1126/science.1246843

Exploring bacterial lignin degradation
journal, April 2014


Production of natural value-added compounds: an insight into the eugenol biotransformation pathway
journal, March 2013

  • Mishra, Shashank; Sachan, Ashish; Sachan, Shashwati Ghosh
  • Journal of Industrial Microbiology & Biotechnology, Vol. 40, Issue 6
  • DOI: 10.1007/s10295-013-1255-9

Highly selective generation of vanillin by anodic degradation of lignin: a combined approach of electrochemistry and product isolation by adsorption
journal, January 2015

  • Schmitt, Dominik; Regenbrecht, Carolin; Hartmer, Marius
  • Beilstein Journal of Organic Chemistry, Vol. 11, p. 473-480
  • DOI: 10.3762/bjoc.11.53

Valorization of Biomass: Deriving More Value from Waste
journal, August 2012


Survey of renewable chemicals produced from lignocellulosic biomass during ionic liquid pretreatment
journal, January 2013

  • Varanasi, Patanjali; Singh, Priyanka; Auer, Manfred
  • Biotechnology for Biofuels, Vol. 6, Issue 1
  • DOI: 10.1186/1754-6834-6-14

Lignin bioengineering
journal, April 2014


Engineering Plant Biomass Lignin Content and Composition for Biofuels and Bioproducts
journal, July 2015

  • Welker, Cassie; Balasubramanian, Vimal; Petti, Carloalberto
  • Energies, Vol. 8, Issue 8
  • DOI: 10.3390/en8087654

Enhanced arsenate uptake in Saccharomyces cerevisiae overexpressing the Pho84 phosphate transporter
journal, May 2012

  • Shen, Michael W. Y.; Shah, Dhawal; Chen, Wilfred
  • Biotechnology Progress, Vol. 28, Issue 3
  • DOI: 10.1002/btpr.1531

Enhancement of protocatechuate decarboxylase activity for the effective production of muconate from lignin-related aromatic compounds
journal, December 2014


Effect of lignocellulose-derived inhibitors on the growth and d-lactic acid production of Sporolactobacillus inulinus YBS1-5
journal, July 2015

  • Bai, Zhongzhong; Gao, Zhen; He, Bingfang
  • Bioprocess and Biosystems Engineering, Vol. 38, Issue 10
  • DOI: 10.1007/s00449-015-1440-5

Lignin Depolymerization and Conversion A Review of Thermochemical Methods
journal, November 2010

  • Pandey, M. P.; Kim, C. S.
  • Chemical Engineering & Technology, Vol. 34, Issue 1, p. 29-41
  • DOI: 10.1002/ceat.201000270

Engineering Escherichia coli coculture systems for the production of biochemical products
journal, June 2015

  • Zhang, Haoran; Pereira, Brian; Li, Zhengjun
  • Proceedings of the National Academy of Sciences, Vol. 112, Issue 27
  • DOI: 10.1073/pnas.1506781112

The Catalytic Valorization of Lignin for the Production of Renewable Chemicals
journal, June 2010

  • Zakzeski, Joseph; Bruijnincx, Pieter C. A.; Jongerius, Anna L.
  • Chemical Reviews, Vol. 110, Issue 6, p. 3552-3599
  • DOI: 10.1021/cr900354u

Characterization of ligV Essential for Catabolism of Vanillin by Sphingomonas paucimobilis SYK-6
journal, October 2007

  • Masai, Eiji; Yamamoto, Yuko; Inoue, Tomohiko
  • Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 10
  • DOI: 10.1271/bbb.70267

Adipic acid production from lignin
journal, January 2015

  • Vardon, Derek R.; Franden, Mary Ann; Johnson, Christopher W.
  • Energy & Environmental Science, Vol. 8, Issue 2
  • DOI: 10.1039/C4EE03230F

Breaking Down Lignin to High-Value Chemicals: The Conversion of Lignocellulose to Vanillin in a Gene Deletion Mutant of Rhodococcus jostii RHA1
journal, August 2013

  • Sainsbury, Paul D.; Hardiman, Elizabeth M.; Ahmad, Mark
  • ACS Chemical Biology, Vol. 8, Issue 10
  • DOI: 10.1021/cb400505a

Metabolic engineering of muconic acid production in Saccharomyces cerevisiae
journal, January 2013


Copper(II)-catalyzed oxidation of catechol by molecular oxygen in aqueous solution
journal, January 1992

  • Balla, Jozsef; Kiss, Tamas; Jameson, Reginald F.
  • Inorganic Chemistry, Vol. 31, Issue 1
  • DOI: 10.1021/ic00027a012

Rapid room temperature solubilization and depolymerization of polymeric lignin at high loadings
journal, January 2016

  • Sun, Jian; Dutta, Tanmoy; Parthasarathi, Ramakrishnan
  • Green Chemistry, Vol. 18, Issue 22
  • DOI: 10.1039/C6GC02258H

Tailoring strain construction strategies for muconic acid production in S. cerevisiae and E. coli
journal, December 2014


Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway
journal, December 2015


Isolation of a benzoate-utilizing Pseudomonas strain from soil and production of catechol from benzoate by transpositional mutants
journal, January 2001

  • Wang, Chuan L. u.; Takcnaka, Shinji; Murakami, Shuichiro
  • Microbiological Research, Vol. 156, Issue 2
  • DOI: 10.1078/0944-5013-00096

The ADH7 Promoter of Saccharomyces cerevisiae is Vanillin-Inducible and Enables mRNA Translation Under Severe Vanillin Stress
journal, December 2015


Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation
journal, June 2008

  • Hearn, E. M.; Patel, D. R.; van den Berg, B.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 25
  • DOI: 10.1073/pnas.0801264105

Genetic and Biochemical Investigations on Bacterial Catabolic Pathways for Lignin-Derived Aromatic Compounds
journal, January 2007

  • Masai, Eiji; Katayama, Yoshihiro; Fukuda, Masao
  • Bioscience, Biotechnology, and Biochemistry, Vol. 71, Issue 1
  • DOI: 10.1271/bbb.60437

Biodegradation of Lignin by White Rot Fungi
journal, July 1999

  • Leonowicz, Andrzej; Matuszewska, Anna; Luterek, Jolanta
  • Fungal Genetics and Biology, Vol. 27, Issue 2-3
  • DOI: 10.1006/fgbi.1999.1150

Lignin Valorization: Two Hybrid Biochemical Routes for the Conversion of Polymeric Lignin into Value-added Chemicals
journal, August 2017