DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals

Abstract

High-resolution Bragg diffraction from aerosolized single granulovirus nanocrystals using an X-ray free-electron laser is demonstrated. The outer dimensions of the in-vacuum aerosol injector components are identical to conventional liquid-microjet nozzles used in serial diffraction experiments, which allows the injector to be utilized with standard mountings. As compared with liquid-jet injection, the X-ray scattering background is reduced by several orders of magnitude by the use of helium carrier gas rather than liquid. Such reduction is required for diffraction measurements of small macromolecular nanocrystals and single particles. High particle speeds are achieved, making the approach suitable for use at upcoming high-repetition-rate facilities.

Authors:
ORCiD logo; ; ORCiD logo; ; ; ; ; ; ; ; ; ; ORCiD logo; ; ; ; ; ; ; more »; ; ; ; ORCiD logo; ORCiD logo « less
Publication Date:
Research Org.:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Institutes of Health (NIH); European Union (EU); National Science Foundation (NSF); German Research Foundation (DFG)
OSTI Identifier:
1418182
Alternate Identifier(s):
OSTI ID: 1425348
Grant/Contract Number:  
AC02-76SF00515; P41GM103393; P41RR001209; ERC-Kupper-614507; 1231306
Resource Type:
Published Article
Journal Name:
Journal of Applied Crystallography (Online)
Additional Journal Information:
Journal Name: Journal of Applied Crystallography (Online) Journal Volume: 51 Journal Issue: 1; Journal ID: ISSN 1600-5767
Publisher:
International Union of Crystallography (IUCr)
Country of Publication:
Denmark
Language:
English
Subject:
36 MATERIALS SCIENCE; 77 NANOSCIENCE AND NANOTECHNOLOGY

Citation Formats

Awel, Salah, Kirian, Richard A., Wiedorn, Max O., Beyerlein, Kenneth R., Roth, Nils, Horke, Daniel A., Oberthür, Dominik, Knoska, Juraj, Mariani, Valerio, Morgan, Andrew, Adriano, Luigi, Tolstikova, Alexandra, Xavier, P. Lourdu, Yefanov, Oleksandr, Aquila, Andrew, Barty, Anton, Roy-Chowdhury, Shatabdi, Hunter, Mark S., James, Daniel, Robinson, Joseph S., Weierstall, Uwe, Rode, Andrei V., Bajt, Saša, Küpper, Jochen, and Chapman, Henry N. Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals. Denmark: N. p., 2018. Web. doi:10.1107/S1600576717018131.
Awel, Salah, Kirian, Richard A., Wiedorn, Max O., Beyerlein, Kenneth R., Roth, Nils, Horke, Daniel A., Oberthür, Dominik, Knoska, Juraj, Mariani, Valerio, Morgan, Andrew, Adriano, Luigi, Tolstikova, Alexandra, Xavier, P. Lourdu, Yefanov, Oleksandr, Aquila, Andrew, Barty, Anton, Roy-Chowdhury, Shatabdi, Hunter, Mark S., James, Daniel, Robinson, Joseph S., Weierstall, Uwe, Rode, Andrei V., Bajt, Saša, Küpper, Jochen, & Chapman, Henry N. Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals. Denmark. https://doi.org/10.1107/S1600576717018131
Awel, Salah, Kirian, Richard A., Wiedorn, Max O., Beyerlein, Kenneth R., Roth, Nils, Horke, Daniel A., Oberthür, Dominik, Knoska, Juraj, Mariani, Valerio, Morgan, Andrew, Adriano, Luigi, Tolstikova, Alexandra, Xavier, P. Lourdu, Yefanov, Oleksandr, Aquila, Andrew, Barty, Anton, Roy-Chowdhury, Shatabdi, Hunter, Mark S., James, Daniel, Robinson, Joseph S., Weierstall, Uwe, Rode, Andrei V., Bajt, Saša, Küpper, Jochen, and Chapman, Henry N. Thu . "Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals". Denmark. https://doi.org/10.1107/S1600576717018131.
@article{osti_1418182,
title = {Femtosecond X-ray diffraction from an aerosolized beam of protein nanocrystals},
author = {Awel, Salah and Kirian, Richard A. and Wiedorn, Max O. and Beyerlein, Kenneth R. and Roth, Nils and Horke, Daniel A. and Oberthür, Dominik and Knoska, Juraj and Mariani, Valerio and Morgan, Andrew and Adriano, Luigi and Tolstikova, Alexandra and Xavier, P. Lourdu and Yefanov, Oleksandr and Aquila, Andrew and Barty, Anton and Roy-Chowdhury, Shatabdi and Hunter, Mark S. and James, Daniel and Robinson, Joseph S. and Weierstall, Uwe and Rode, Andrei V. and Bajt, Saša and Küpper, Jochen and Chapman, Henry N.},
abstractNote = {High-resolution Bragg diffraction from aerosolized single granulovirus nanocrystals using an X-ray free-electron laser is demonstrated. The outer dimensions of the in-vacuum aerosol injector components are identical to conventional liquid-microjet nozzles used in serial diffraction experiments, which allows the injector to be utilized with standard mountings. As compared with liquid-jet injection, the X-ray scattering background is reduced by several orders of magnitude by the use of helium carrier gas rather than liquid. Such reduction is required for diffraction measurements of small macromolecular nanocrystals and single particles. High particle speeds are achieved, making the approach suitable for use at upcoming high-repetition-rate facilities.},
doi = {10.1107/S1600576717018131},
journal = {Journal of Applied Crystallography (Online)},
number = 1,
volume = 51,
place = {Denmark},
year = {Thu Feb 01 00:00:00 EST 2018},
month = {Thu Feb 01 00:00:00 EST 2018}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record
https://doi.org/10.1107/S1600576717018131

Citation Metrics:
Cited by: 15 works
Citation information provided by
Web of Science

Figures / Tables:

Figure 1 Figure 1: CNAI assembly and its operation during the CXI experiment. (a) Sketch of the basic aerosol generation and transportation setup. (b) The aerosol nozzle mounted on the nozzle rod. (c) Timeintegrated image of a laser-illuminated stream of GV particles exiting the CNAI, recorded using the inline microscope at themore » CXI instrument. This image was formed by averaging over 3.7 min, with a running median background subtracted from each frame. The CNAI tip is seen in the left portion of the image, and the approximate X-ray focal point is indicated by the star.« less

Save / Share:

Works referenced in this record:

Single mimivirus particles intercepted and imaged with an X-ray laser
journal, February 2011

  • Seibert, M. Marvin; Ekeberg, Tomas; Maia, Filipe R. N. C.
  • Nature, Vol. 470, Issue 7332
  • DOI: 10.1038/nature09748

Improving diffraction by humidity control: a novel device compatible with X-ray beamlines
journal, November 2009

  • Sanchez-Weatherby, Juan; Bowler, Matthew W.; Huet, Julien
  • Acta Crystallographica Section D Biological Crystallography, Vol. 65, Issue 12
  • DOI: 10.1107/S0907444909037822

Molecular Imaging Using X-Ray Free-Electron Lasers
journal, April 2013


CrystFEL : a software suite for snapshot serial crystallography
journal, March 2012

  • White, Thomas A.; Kirian, Richard A.; Martin, Andrew V.
  • Journal of Applied Crystallography, Vol. 45, Issue 2
  • DOI: 10.1107/S0021889812002312

Emerging opportunities in structural biology with X-ray free-electron lasers
journal, October 2012


Electrospray ion source. Another variation on the free-jet theme
journal, September 1984

  • Yamashita, Masamichi; Fenn, John B.
  • The Journal of Physical Chemistry, Vol. 88, Issue 20
  • DOI: 10.1021/j150664a002

Molecular identification and phylogenetic analysis of baculoviruses from Lepidoptera
journal, March 2006


Single-particle coherent diffractive imaging with a soft x-ray free electron laser: towards soot aerosol morphology
journal, September 2010

  • Bogan, Michael J.; Starodub, Dmitri; Hampton, Christina Y.
  • Journal of Physics B: Atomic, Molecular and Optical Physics, Vol. 43, Issue 19
  • DOI: 10.1088/0953-4075/43/19/194013

Simple convergent-nozzle aerosol injector for single-particle diffractive imaging with X-ray free-electron lasers
journal, June 2015

  • Kirian, R. A.; Awel, S.; Eckerskorn, N.
  • Structural Dynamics, Vol. 2, Issue 4
  • DOI: 10.1063/1.4922648

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses
journal, April 2017


Single Particle X-ray Diffractive Imaging
journal, January 2008

  • Bogan, Michael J.; Benner, W. Henry; Boutet, Sébastien
  • Nano Letters, Vol. 8, Issue 1, p. 310-316
  • DOI: 10.1021/nl072728k

A new cascade impactor for aerosol sampling with subsequent PIXE analysis
journal, April 1996

  • Maenhaut, W.; Hillamo, R.; Mäkelä, T.
  • Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms, Vol. 109-110
  • DOI: 10.1016/0168-583X(95)00955-8

Complex Colloidal Microclusters from Aerosol Droplets
journal, November 2007

  • Cho, Young-Sang; Yi, Gi-Ra; Chung, Yun Seup
  • Langmuir, Vol. 23, Issue 24
  • DOI: 10.1021/la7018346

Aerosol Imaging with a Soft X-Ray Free Electron Laser
journal, February 2010

  • Bogan, Michael J.; Boutet, Sébastien; Chapman, Henry N.
  • Aerosol Science and Technology, Vol. 44, Issue 3
  • DOI: 10.1080/02786820903485800

Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography
journal, February 2014

  • Weierstall, Uwe; James, Daniel; Wang, Chong
  • Nature Communications, Vol. 5, Issue 1
  • DOI: 10.1038/ncomms4309

Ceramic micro-injection molded nozzles for serial femtosecond crystallography sample delivery
journal, December 2015

  • Beyerlein, K. R.; Adriano, L.; Heymann, M.
  • Review of Scientific Instruments, Vol. 86, Issue 12
  • DOI: 10.1063/1.4936843

High-speed fixed-target serial virus crystallography
journal, June 2017

  • Roedig, Philip; Ginn, Helen M.; Pakendorf, Tim
  • Nature Methods, Vol. 14, Issue 8
  • DOI: 10.1038/nmeth.4335

Visualizing aerosol-particle injection for diffractive-imaging experiments
journal, January 2016

  • Awel, Salah; Kirian, Richard A.; Eckerskorn, Niko
  • Optics Express, Vol. 24, Issue 6
  • DOI: 10.1364/OE.24.006507

High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography
journal, May 2012


Electrospraying of conducting liquids for monodisperse aerosol generation in the 4 nm to 1.8 μm diameter range
journal, September 1995

  • Chen, Da-Ren; Pui, David Y. H.; Kaufman, Stanley L.
  • Journal of Aerosol Science, Vol. 26, Issue 6, p. 963-977
  • DOI: 10.1016/0021-8502(95)00027-A

Phasing of coherent femtosecond X-ray diffraction from size-varying nanocrystals
journal, January 2011

  • Spence, John C. H.; Kirian, Richard A.; Wang, Xiaoyu
  • Optics Express, Vol. 19, Issue 4
  • DOI: 10.1364/OE.19.002866

Femtosecond X-ray protein nanocrystallography
journal, February 2011

  • Chapman, Henry N.; Fromme, Petra; Barty, Anton
  • Nature, Vol. 470, Issue 7332, p. 73-77
  • DOI: 10.1038/nature09750

Linac Coherent Light Source data analysis using psana
journal, March 2016

  • Damiani, D.; Dubrovin, M.; Gaponenko, I.
  • Journal of Applied Crystallography, Vol. 49, Issue 2
  • DOI: 10.1107/S1600576716004349

X-Ray Diffraction from Isolated and Strongly Aligned Gas-Phase Molecules with a Free-Electron Laser
journal, February 2014


Continuous diffraction of molecules and disordered molecular crystals
journal, July 2017

  • Chapman, Henry N.; Yefanov, Oleksandr M.; Ayyer, Kartik
  • Journal of Applied Crystallography, Vol. 50, Issue 4
  • DOI: 10.1107/S160057671700749X

Injector for scattering measurements on fully solvated biospecies
journal, March 2012

  • Weierstall, U.; Spence, J. C. H.; Doak, R. B.
  • Review of Scientific Instruments, Vol. 83, Issue 3
  • DOI: 10.1063/1.3693040

Characterizing gas flow from aerosol particle injectors
journal, March 2017

  • Horke, Daniel A.; Roth, Nils; Worbs, Lena
  • Journal of Applied Physics, Vol. 121, Issue 12
  • DOI: 10.1063/1.4978914

Serial femtosecond crystallography: the first five years
journal, February 2015


Femtosecond X-ray diffraction from two-dimensional protein crystals
journal, February 2014


A Bright Future for Serial Femtosecond Crystallography with XFELs
journal, September 2017

  • Johansson, Linda C.; Stauch, Benjamin; Ishchenko, Andrii
  • Trends in Biochemical Sciences, Vol. 42, Issue 9
  • DOI: 10.1016/j.tibs.2017.06.007

Double-flow focused liquid injector for efficient serial femtosecond crystallography
journal, March 2017

  • Oberthuer, Dominik; Knoška, Juraj; Wiedorn, Max O.
  • Scientific Reports, Vol. 7, Issue 1
  • DOI: 10.1038/srep44628

The Coherent X-ray Imaging instrument at the Linac Coherent Light Source
journal, April 2015

  • Liang, Mengning; Williams, Garth J.; Messerschmidt, Marc
  • Journal of Synchrotron Radiation, Vol. 22, Issue 3
  • DOI: 10.1107/S160057751500449X

Crystallography using an X-ray free-electron laser
journal, July 2014


A micro-patterned silicon chip as sample holder for macromolecular crystallography experiments with minimal background scattering
journal, May 2015

  • Roedig, P.; Vartiainen, I.; Duman, R.
  • Scientific Reports, Vol. 5, Issue 1
  • DOI: 10.1038/srep10451

Potential for biomolecular imaging with femtosecond X-ray pulses
journal, August 2000

  • Neutze, Richard; Wouts, Remco; van der Spoel, David
  • Nature, Vol. 406, Issue 6797
  • DOI: 10.1038/35021099

Diffractive Imaging of Coherent Nuclear Motion in Isolated Molecules
journal, October 2016


The linac coherent light source single particle imaging road map
journal, July 2015

  • Aquila, A.; Barty, A.; Bostedt, C.
  • Structural Dynamics, Vol. 2, Issue 4
  • DOI: 10.1063/1.4918726

X-ray lasers for structural and dynamic biology
journal, September 2012


Liquid sample delivery techniques for serial femtosecond crystallography
journal, July 2014

  • Weierstall, Uwe
  • Philosophical Transactions of the Royal Society B: Biological Sciences, Vol. 369, Issue 1647
  • DOI: 10.1098/rstb.2013.0337

Macromolecular diffractive imaging using imperfect crystals
journal, February 2016

  • Ayyer, Kartik; Yefanov, Oleksandr M.; Oberthür, Dominik
  • Nature, Vol. 530, Issue 7589, p. 202-206
  • DOI: 10.1038/nature16949

Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser
journal, February 2017

  • Gati, Cornelius; Oberthuer, Dominik; Yefanov, Oleksandr
  • Proceedings of the National Academy of Sciences, Vol. 114, Issue 9
  • DOI: 10.1073/pnas.1609243114

Gas dynamic virtual nozzle for generation of microscopic droplet streams
journal, September 2008

  • DePonte, D. P.; Weierstall, U.; Schmidt, K.
  • Journal of Physics D: Applied Physics, Vol. 41, Issue 19, Article No. 195505
  • DOI: 10.1088/0022-3727/41/19/195505

Recent developments in CrystFEL
journal, March 2016

  • White, Thomas A.; Mariani, Valerio; Brehm, Wolfgang
  • Journal of Applied Crystallography, Vol. 49, Issue 2
  • DOI: 10.1107/S1600576716004751

Figures/Tables have been extracted from DOE-funded journal article accepted manuscripts.