Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin

Yoon, Chun Hong; DeMirci, Hasan; Sierra, Raymond G.; Dao, E. Han; Ahmadi, Radman; Aksit, Fulya; Aquila, Andrew L.; Batyuk, Alexander; Ciftci, Halilibrahim; Guillet, Serge; Hayes, Matt J.; Hayes, Brandon; Lane, Thomas J.; Liang, Meng; Lundström, Ulf; Koglin, Jason E.; Mgbam, Paul; Rao, Yashas; Rendahl, Theodore; Rodriguez, Evan; Zhang, Lindsey; Wakatsuki, Soichi; Boutet, Sébastien; Holton, James M.; Hunter, Mark S.

doi:10.1038/sdata.2017.55

Title: Se-SAD serial femtosecond crystallography datasets from selenobiotinyl-streptavidin

Journal Article · 25 April 2017 · Scientific Data

DOI: https://doi.org/10.1038/sdata.2017.55 · OSTI ID:1361134

Yoon, Chun Hong ^[1];

^[2]; Sierra, Raymond G. ^[1]; Dao, E. Han ^[3]; Ahmadi, Radman ^[1]; Aksit, Fulya ^[4]; Aquila, Andrew L. ^[1];

^[1]; Ciftci, Halilibrahim ^[1]; Guillet, Serge ^[1]; Hayes, Matt J. ^[1]; Hayes, Brandon ^[1]; Lane, Thomas J. ^[5]; Liang, Meng ^[1]; Lundström, Ulf ^[6]; Koglin, Jason E. ^[1]; Mgbam, Paul ^[1]; Rao, Yashas ^[1]; Rendahl, Theodore ^[1]; Rodriguez, Evan ^[1] more »

SLAC National Accelerator Lab., Menlo Park, CA (United States). Linac Coherent Light Source
SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Inst. Biosciences Division. Stanford Synchrotron Radiation Lightsource
SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Inst. Biosciences Division
SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford PULSE Inst.
SLAC National Accelerator Lab., Menlo Park, CA (United States). Linac Coherent Light Source. Biosciences Division
SLAC National Accelerator Lab., Menlo Park, CA (United States). Biosciences Division
SLAC National Accelerator Lab., Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource; Univ. of California, San Francisco, CA (United States). Dept. of Biochemistry and Biophysics

We provide a detailed description of selenobiotinyl-streptavidin (Se-B SA) co-crystal datasets recorded using the Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS) for selenium single-wavelength anomalous diffraction (Se-SAD) structure determination. Se-B SA was chosen as the model system for its high affinity between biotin and streptavidin where the sulfur atom in the biotin molecule (C₁₀H₁₆N₂O₃S) is substituted with selenium. The dataset was collected at three different transmissions (100, 50, and 10%) using a serial sample chamber setup which allows for two sample chambers, a front chamber and a back chamber, to operate simultaneously. Diffraction patterns from Se-B SA were recorded to a resolution of 1.9 Å. The dataset is publicly available through the Coherent X-ray Imaging Data Bank (CXIDB) and also on LCLS compute nodes as a resource for research and algorithm development.

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Research Organization:: SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)

Sponsoring Organization:: USDOE Office of Science (SC), Basic Energy Sciences (BES); USDOE Laboratory Directed Research and Development (LDRD) Program; National Inst. of Health (NIH) (United States)

Contributing Organization:: Univ. of California, San Francisco, CA (United States)

Grant/Contract Number:: AC02-76SF00515; P41GM103393; P41RR001209

OSTI ID:: 1361134

Journal Information:: Scientific Data, Vol. 4; ISSN 2052-4463

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Cited By (4)

Climbing the Data Mountain: Processing of SFX Data Yoon, Chun Hong; White, Thomas A. X-ray Free Electron Lasers https://doi.org/10.1007/978-3-030-00551-1_7	book	January 2018
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Use cases of lossy compression for floating-point data in scientific data sets Cappello, Franck; Di, Sheng; Li, Sihuan The International Journal of High Performance Computing Applications, Vol. 33, Issue 6 https://doi.org/10.1177/1094342019853336	journal	May 2019
Climbing the Data Mountain: Processing of SFX Data Yoon, Chun Hong; White, Thomas A. Deutsches Elektronen-Synchrotron, DESY, Hamburg https://doi.org/10.3204/pubdb-2019-00970	text	January 2018

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